目的：利用Bioinformatics Analysis Tool for Molecular mech ANism of Traditional Chinese Medicine（BATMAN-TCM）在线分析工具预测玄胡索散治疗骨关节炎（osteoarthritis,OA）作用并进行初步试验验证。方法：在数据库中检索玄胡索...目的：利用Bioinformatics Analysis Tool for Molecular mech ANism of Traditional Chinese Medicine（BATMAN-TCM）在线分析工具预测玄胡索散治疗骨关节炎（osteoarthritis,OA）作用并进行初步试验验证。方法：在数据库中检索玄胡索散中单味药化学成分信息,利用BATMAN-TCM预测其潜在作用靶点、通路与疾病,构建化学成分-靶点-疾病网络,预测其治疗OA的作用。采用前交叉韧带横断联合半月板切除术造OA大鼠模型,经玄胡索散治疗后观察其对OA大鼠膝关节组织病理学与总胶原的影响,初步验证预测结果。结果：经BATMANTCM预测发现玄胡索散能作用于多条与OA相关通路,并具有治疗多种骨相关疾病的功效,动物试验表明玄胡索散能明显抑制OA大鼠膝关节软骨损伤（P〈0.05）与胶原降解（P〈0.05）。结论：BATMAN-TCM预测结果较为可靠,玄胡索散具有治疗OA的潜在作用。展开更多
基于中药分子机理的生物信息学分析工具(bioinformatics analysis tool for molecular mechanism of traditional Chinese medicine,BATMAN-TCM)挖掘浙贝母-瓜蒌治疗慢性阻塞性肺病的分子作用机制。应用BATMAN-TCM预测浙贝母-瓜蒌的潜...基于中药分子机理的生物信息学分析工具(bioinformatics analysis tool for molecular mechanism of traditional Chinese medicine,BATMAN-TCM)挖掘浙贝母-瓜蒌治疗慢性阻塞性肺病的分子作用机制。应用BATMAN-TCM预测浙贝母-瓜蒌的潜在靶点,GeneCards数据库检索慢性阻塞性肺病的靶点;应用Cytoscape 3.7.1软件构建化合物-疾病-靶点相互作用网络、蛋白质-蛋白质相互作用(protein-protein interaction,PPI)网络,进行基因本体(gene ontology,GO)功能富集分析和京都基因与基因组百科全书(Kyoto encyclopedia of genes and genomes,KEGG)的生物通路富集分析。结果筛选得到浙贝母-瓜蒌中21种活性成分,基于STRING构建的浙贝母-瓜蒌靶点PPI网络包含131个节点和236条相互作用关系,关键节点包括ANXA1、EDN1、HDAC1、RXRA、ADRA2A、OXT、RXRB等。GO富集分析途径主要涉及离子门控通道活性、底物特异性通道活性、被动跨膜转运活性、细胞外配体门控离子通道活性、神经递质受体活性、配体门控离子通道活性等。KEGG通道分析主要涉及神经活动配体-受体相互作用、cAMP信号通路、钙离子信使通路、类胆碱能突触、逆行内源性大麻素信号传导、5-羟色胺能突触、多巴胺能突触等途径。研究结果提示浙贝母-瓜蒌关键的作用靶点包括ANXA1、HDAC1等,信号通路方面涉及类胆碱能、5-羟色胺、多巴胺等神经受体相关通路,体现了中药复方的整体性特点,为进一步研究浙贝母-瓜蒌的分子作用机制提供了新思路。展开更多
目的:通过网络药理学方法探析小活络丹治疗冻结肩的作用机制。方法:运用中药分子机制的生物信息学分析工具(a Bioinformatics Analysis Tool for Molecular mechANism of Traditional Chinese Medicine,BATMAN-TCM)提取小活络丹的药物...目的:通过网络药理学方法探析小活络丹治疗冻结肩的作用机制。方法:运用中药分子机制的生物信息学分析工具(a Bioinformatics Analysis Tool for Molecular mechANism of Traditional Chinese Medicine,BATMAN-TCM)提取小活络丹的药物有效成分以及潜在基因靶点,利用GeneCards平台检索冻结肩的作用靶点,对二者的检测结果提取交集靶点,构架蛋白互作(protein-protein interaction,PPI)网络分析、基因本体功能富集分析(gene ontology,GO)以及京都基因和基因组百科全书(Kyoto encyclopedia of genes and gnomes,KEGG)生物通路富集分析,构建“药物-成分-靶点-通路-疾病”网络。结果:筛选出小活络丹有效活性成分43个,涉及基因靶点346个,冻结肩疾病靶点1382个,药物与疾病交集靶点83个;PPI网络分析共获得83个节点,386条边,平均节点度值9.3,磷酸肌醇3激酶调控亚基(PIK3R1)、整联蛋白β2(ITGβ2)、组蛋白脱乙酰基酶2(HDAC2)等13个关联性最强的靶点可能是治疗冻结肩的核心靶点;GO功能分析中涉及生物过程(biological process,BP)的有238条,细胞组成(cellular component,CC)60条,分子功能(molecular function,MF)54条;KEGG通路富集分析出79条信号通路,主要包括神经活性配体-受体相互作用、c AMP信号通路等;复杂网络分析共有417个节点,935条边,平均度值4.48,度值最高的成分是没药中的肉桂醛和丁香酚,可能是小活络丹治疗冻结肩发挥关键作用的活性成分。结论:小活络丹治疗冻结肩具有多成分、多途径、多靶点的作用特点,为临床治疗冻结肩进一步提供理论依据。展开更多
[Objectives]To explore the molecular mechanism of Zhizi Ganjiang Decoction(ZZGJD)regulating sleep disorders based on the network pharmacology.[Methods]The BATMAN-TCM server was used to predict the potential targets of...[Objectives]To explore the molecular mechanism of Zhizi Ganjiang Decoction(ZZGJD)regulating sleep disorders based on the network pharmacology.[Methods]The BATMAN-TCM server was used to predict the potential targets of ZZGJD and constructed a compound-disease-target network map,and the GeneCards database was used to search for insomnia-related targets;with the aid of Cytoscape 3.5.1 software,the compound-insomnia target interaction network and protein-protein interaction(PPI)network were constructed,and gene ontology(GO)enrichment,Reactome pathway enrichment,and biological pathway enrichment analysis based on KEGG(Kyoto Encyclopedia of Genes and Enomes)was performed.[Results]The constructed PPI network of ZZGJD involves 204 nodes and 645 interaction relationships.Key nodes involve G protein-coupled receptors,rhodopsin-like adrenaline receptor families,zinc finger proteins,nuclear hormone receptor superfamilies,ligand-binding domains of hormone receptors,voltage-gated calcium(Ca^(2+))channel IQ domains,and neuropituitary hormones.The related entries of GO enrichment analysis pathway mainly involve G protein-coupled receptor activity,neurotransmitter receptor activity,adrenergic receptor activity,ammonium ion binding,catecholamine binding,G protein-coupled serotonin receptor activity,serotonin receptor activity,and steroid hormone receptors(SHRs)activity.Reactome pathway mainly involves amine ligand binding receptors,rhodopsin-like receptors,G protein-coupled receptor ligand binding,adrenergic receptors,neuronal systems and signal transduction,etc.KEGG channel analysis mainly involves neural activity ligand-receptor interaction,calcium ion messenger pathway,cAMP signaling pathway,serotonergic synapse,dopaminergic synapse,cGMP-PKG signaling pathway,and cholinergic synapse pathway,etc.[Conclusions]The potential targets of ZZGJD in the treatment of insomnia mainly involve G protein-coupled receptors,and regulate various neural receptor pathways such as calcium ion channels,serotonin,dopamine,and adrenergic receptors.INS,IGF-1,CTNNB1,ESR1,HIF-1A,etc.may be the key targets of ZZGJD in regulating sleep disorders,reflecting the multi-target and overall function characteristics of Chinese herbal compounds.ZZGJD is of great significance in the treatment of sleep disorders caused by blood sugar abnormality in patients with diabetes and perimenopausal hormones in women.This article is expected to It provide new ideas for in-depth study of the molecular mechanism of ZZGJD.展开更多
Diabetic nephropathy is one of the most serious complications of diabetes mellitus. In the early stage, edema and proteinuria are the main clinical manifestations. In the later stage, glomerulosclerosis and interstiti...Diabetic nephropathy is one of the most serious complications of diabetes mellitus. In the early stage, edema and proteinuria are the main clinical manifestations. In the later stage, glomerulosclerosis and interstitial fibrosis will occur. And the prognosis is poor. Nowadays, traditional Chinese medicine has a remarkable curative effect in the treatment of diabetic nephropathy. There are more and more studies on the treatment of diabetic nephropathy with traditional Chinese medicine, but most of them focus on the syndromes of diabetic nephropathy, which are short of in-depth research and summary on the mechanism of Chinese herbal prescriptions. In this paper, the traditional Chinese medicine inheritance support system and network pharmacology BATMAN-TCM software were used to collect and analyze the relevant literature. It was found that the core compatibility of Shanzhuyu, Fuling and Shuyu in the treatment of diabetic nephropathy is closely related to the signal transduction pathway and target of diabetic nephropathy, and has a positive effect on the improvement of clinical symptoms such as proteinuria, glycometabolism disorder, edema, etc. This paper explores the core compatibility of Shanzhuyu, Fuling and Shuyu on diabetic nephropathy, in order to provide reference for clinical treatment.展开更多
文摘目的：利用Bioinformatics Analysis Tool for Molecular mech ANism of Traditional Chinese Medicine（BATMAN-TCM）在线分析工具预测玄胡索散治疗骨关节炎（osteoarthritis,OA）作用并进行初步试验验证。方法：在数据库中检索玄胡索散中单味药化学成分信息,利用BATMAN-TCM预测其潜在作用靶点、通路与疾病,构建化学成分-靶点-疾病网络,预测其治疗OA的作用。采用前交叉韧带横断联合半月板切除术造OA大鼠模型,经玄胡索散治疗后观察其对OA大鼠膝关节组织病理学与总胶原的影响,初步验证预测结果。结果：经BATMANTCM预测发现玄胡索散能作用于多条与OA相关通路,并具有治疗多种骨相关疾病的功效,动物试验表明玄胡索散能明显抑制OA大鼠膝关节软骨损伤（P〈0.05）与胶原降解（P〈0.05）。结论：BATMAN-TCM预测结果较为可靠,玄胡索散具有治疗OA的潜在作用。
文摘基于中药分子机理的生物信息学分析工具(bioinformatics analysis tool for molecular mechanism of traditional Chinese medicine,BATMAN-TCM)挖掘浙贝母-瓜蒌治疗慢性阻塞性肺病的分子作用机制。应用BATMAN-TCM预测浙贝母-瓜蒌的潜在靶点,GeneCards数据库检索慢性阻塞性肺病的靶点;应用Cytoscape 3.7.1软件构建化合物-疾病-靶点相互作用网络、蛋白质-蛋白质相互作用(protein-protein interaction,PPI)网络,进行基因本体(gene ontology,GO)功能富集分析和京都基因与基因组百科全书(Kyoto encyclopedia of genes and genomes,KEGG)的生物通路富集分析。结果筛选得到浙贝母-瓜蒌中21种活性成分,基于STRING构建的浙贝母-瓜蒌靶点PPI网络包含131个节点和236条相互作用关系,关键节点包括ANXA1、EDN1、HDAC1、RXRA、ADRA2A、OXT、RXRB等。GO富集分析途径主要涉及离子门控通道活性、底物特异性通道活性、被动跨膜转运活性、细胞外配体门控离子通道活性、神经递质受体活性、配体门控离子通道活性等。KEGG通道分析主要涉及神经活动配体-受体相互作用、cAMP信号通路、钙离子信使通路、类胆碱能突触、逆行内源性大麻素信号传导、5-羟色胺能突触、多巴胺能突触等途径。研究结果提示浙贝母-瓜蒌关键的作用靶点包括ANXA1、HDAC1等,信号通路方面涉及类胆碱能、5-羟色胺、多巴胺等神经受体相关通路,体现了中药复方的整体性特点,为进一步研究浙贝母-瓜蒌的分子作用机制提供了新思路。
文摘目的:通过网络药理学方法探析小活络丹治疗冻结肩的作用机制。方法:运用中药分子机制的生物信息学分析工具(a Bioinformatics Analysis Tool for Molecular mechANism of Traditional Chinese Medicine,BATMAN-TCM)提取小活络丹的药物有效成分以及潜在基因靶点,利用GeneCards平台检索冻结肩的作用靶点,对二者的检测结果提取交集靶点,构架蛋白互作(protein-protein interaction,PPI)网络分析、基因本体功能富集分析(gene ontology,GO)以及京都基因和基因组百科全书(Kyoto encyclopedia of genes and gnomes,KEGG)生物通路富集分析,构建“药物-成分-靶点-通路-疾病”网络。结果:筛选出小活络丹有效活性成分43个,涉及基因靶点346个,冻结肩疾病靶点1382个,药物与疾病交集靶点83个;PPI网络分析共获得83个节点,386条边,平均节点度值9.3,磷酸肌醇3激酶调控亚基(PIK3R1)、整联蛋白β2(ITGβ2)、组蛋白脱乙酰基酶2(HDAC2)等13个关联性最强的靶点可能是治疗冻结肩的核心靶点;GO功能分析中涉及生物过程(biological process,BP)的有238条,细胞组成(cellular component,CC)60条,分子功能(molecular function,MF)54条;KEGG通路富集分析出79条信号通路,主要包括神经活性配体-受体相互作用、c AMP信号通路等;复杂网络分析共有417个节点,935条边,平均度值4.48,度值最高的成分是没药中的肉桂醛和丁香酚,可能是小活络丹治疗冻结肩发挥关键作用的活性成分。结论:小活络丹治疗冻结肩具有多成分、多途径、多靶点的作用特点,为临床治疗冻结肩进一步提供理论依据。
文摘[Objectives]To explore the molecular mechanism of Zhizi Ganjiang Decoction(ZZGJD)regulating sleep disorders based on the network pharmacology.[Methods]The BATMAN-TCM server was used to predict the potential targets of ZZGJD and constructed a compound-disease-target network map,and the GeneCards database was used to search for insomnia-related targets;with the aid of Cytoscape 3.5.1 software,the compound-insomnia target interaction network and protein-protein interaction(PPI)network were constructed,and gene ontology(GO)enrichment,Reactome pathway enrichment,and biological pathway enrichment analysis based on KEGG(Kyoto Encyclopedia of Genes and Enomes)was performed.[Results]The constructed PPI network of ZZGJD involves 204 nodes and 645 interaction relationships.Key nodes involve G protein-coupled receptors,rhodopsin-like adrenaline receptor families,zinc finger proteins,nuclear hormone receptor superfamilies,ligand-binding domains of hormone receptors,voltage-gated calcium(Ca^(2+))channel IQ domains,and neuropituitary hormones.The related entries of GO enrichment analysis pathway mainly involve G protein-coupled receptor activity,neurotransmitter receptor activity,adrenergic receptor activity,ammonium ion binding,catecholamine binding,G protein-coupled serotonin receptor activity,serotonin receptor activity,and steroid hormone receptors(SHRs)activity.Reactome pathway mainly involves amine ligand binding receptors,rhodopsin-like receptors,G protein-coupled receptor ligand binding,adrenergic receptors,neuronal systems and signal transduction,etc.KEGG channel analysis mainly involves neural activity ligand-receptor interaction,calcium ion messenger pathway,cAMP signaling pathway,serotonergic synapse,dopaminergic synapse,cGMP-PKG signaling pathway,and cholinergic synapse pathway,etc.[Conclusions]The potential targets of ZZGJD in the treatment of insomnia mainly involve G protein-coupled receptors,and regulate various neural receptor pathways such as calcium ion channels,serotonin,dopamine,and adrenergic receptors.INS,IGF-1,CTNNB1,ESR1,HIF-1A,etc.may be the key targets of ZZGJD in regulating sleep disorders,reflecting the multi-target and overall function characteristics of Chinese herbal compounds.ZZGJD is of great significance in the treatment of sleep disorders caused by blood sugar abnormality in patients with diabetes and perimenopausal hormones in women.This article is expected to It provide new ideas for in-depth study of the molecular mechanism of ZZGJD.
文摘Diabetic nephropathy is one of the most serious complications of diabetes mellitus. In the early stage, edema and proteinuria are the main clinical manifestations. In the later stage, glomerulosclerosis and interstitial fibrosis will occur. And the prognosis is poor. Nowadays, traditional Chinese medicine has a remarkable curative effect in the treatment of diabetic nephropathy. There are more and more studies on the treatment of diabetic nephropathy with traditional Chinese medicine, but most of them focus on the syndromes of diabetic nephropathy, which are short of in-depth research and summary on the mechanism of Chinese herbal prescriptions. In this paper, the traditional Chinese medicine inheritance support system and network pharmacology BATMAN-TCM software were used to collect and analyze the relevant literature. It was found that the core compatibility of Shanzhuyu, Fuling and Shuyu in the treatment of diabetic nephropathy is closely related to the signal transduction pathway and target of diabetic nephropathy, and has a positive effect on the improvement of clinical symptoms such as proteinuria, glycometabolism disorder, edema, etc. This paper explores the core compatibility of Shanzhuyu, Fuling and Shuyu on diabetic nephropathy, in order to provide reference for clinical treatment.
