The conversion of saline-alkali soils into paddy fields for long-term rice cultivation involves multiple disturbances,and as a result,soil microbial communities are altered to adapt to changing environmental condition...The conversion of saline-alkali soils into paddy fields for long-term rice cultivation involves multiple disturbances,and as a result,soil microbial communities are altered to adapt to changing environmental conditions.However,a comprehensive understanding of the succession of soil bacterial communities that occurs during this process is still lacking.In the present study,we utilized data obtained from paddy fields of different rice cultivation years(0-23 years)to investigate the compositional and functional succession of soil bacterial communities.We focused on core bacterial taxa that were specifically enriched at different successional stages.Generalized joint attribute modeling(GJAM)was used to identify core bacterial taxa.Results indicated that the bare saline-alkali soil(0 year,prior to any rice cultivation)shared few core amplicon sequence variants(ASVs)with paddy fields.In the bare saline-alkali soil,Longimicrobiaceae from the phylum Gemmatimonadetes was dominant,while the dominance was subsequently replaced by Burkholderiaceae and Pedosphaeraceae--phyla affiliated with Proteobacteria and Verrucomicrobia--after 5 and 23 years of rice cultivation,respectively.The relative abundances of nitrogen metabolism functions in the core bacterial communities of the bare saline-alkali soil were higher than those at other successional stages,while sulfur metabolism functions exhibited the opposite trend.These indicated that the role of the core bacterial taxa in mediating nutrient cycling also evolved and adapted to changing soil conditions as rice cultivation was established.Redundancy analysis(RDA)indicated that the composition of the core bacterial community in paddy fields with rice cultivation for 0,2 and 4,6,8,10,and 12,and 20 and 23 years were driven by soil nitrate nitrogen content,pH,available phosphorus content,and the ratio of total carbon to total nitrogen,respectively.In summary,the present study provides insights into the succession of soil bacterial communities and core bacterial taxa that occurs during long-term rice cultivation.展开更多
The presence of the blood–brain barrier limits the drug concentration in the brain,while low concentrations of antibiotics make it difficult to kill infecting bacteria and tends to induce drug resistance,making the c...The presence of the blood–brain barrier limits the drug concentration in the brain,while low concentrations of antibiotics make it difficult to kill infecting bacteria and tends to induce drug resistance,making the clinical treatment of bacterial meningitis challenging.Herein,a nose-to-brain delivery strategy of small-sized nanozyme has been fabricated for combating bacterial meningitis,to overcome the low drug concentration and drug resistance.This strategy was achieved by a proteinsupported Au nanozyme(ANZ).With a particle size of less than 10 nm,it possesses both glucose oxidase-like and peroxidase-like activities and can generate large amounts of reactive oxygen species through a cascade effect without the addition of external H_(2)O_(2).Benefiting from the cascade catalytic amplification effect generated by its dual enzymelike activities,ANZ shows significant broad-spectrum antibacterial activity without inducing bacterial resistance in vitro.Notably,small-sized ANZ exhibits higher brain entry efficiency and greater accumulation after intranasal administration compared to oral or intravenous administration.In a mouse model of bacterial meningitis,the mice treated with ANZ had lower bacterial loads in the brain and higher survival and clinical behavior scores compared to the classical antibiotic ceftriaxone.Additionally,the meningitis mice exhibited undamaged cognitive and behavioral abilities,indicating the excellent biocompatibility of ANZ.The above results demonstrate that nose-to-brain delivery of ANZ exhibits high intracerebral accumulation,strong antibacterial efficacy and does not lead to bacterial resistance.It holds broad prospects for the treatment of bacterial meningitis.展开更多
This study evaluated the antibacterial effects of 2%lidocaine and its combination with 0.9%saline solution on Escherichia coli infection in superficial surgical wounds in Wistar rats.The goal was to determine if these...This study evaluated the antibacterial effects of 2%lidocaine and its combination with 0.9%saline solution on Escherichia coli infection in superficial surgical wounds in Wistar rats.The goal was to determine if these treatments could effectively reduce E.coli Colony Forming Units(CFUs)below the critical threshold of 1×105.Seventy male Wistar rats were divided into seven groups,each undergoing different interventions to assess the antibacterial efficacy of lidocaine,with outcomes measured through bacterial cultures and CFU quantification.Results demonstrated a Log10reduction of approximately 0.44 in E.coli CFUs following infiltration with 2%lidocaine.The combined use of 2%lidocaine infiltration and 0.9%saline irrigation resulted in nearly complete suppression of bacterial growth.These findings suggest that these simple interventions could be valuable in emergency surgical settings to mitigate the risk of surgical site infections and serve as effective prophylactic measures.increase in hospital stay,which represents an additional cost in terms of expenses and directly impacts the patient's outcome.11Several lines of evidence point to 104colony forming units per gram of tissue(CFUs/g)as the threshold at which healing generally begins to slow.12Knowledge of the antibacterial activity of lidocaine has been used to prevent bacterial contamination of other lipid-based anesthetics,such as propofol,with a significant decrease in bacterial development13-15and its antifungal effect.15,16Other effects attributed to lidocaine concerning systemic inflammatory response are the inhibition of granulocyte adhesion at sites of inflammation,decreased leukocyte adhesion during endotoxemia,and decreased macromolecular filtration;it is suggested that it may play a therapeutic role in endothelial damage during sepsis.17-19On the other hand,different measures have been taken to reduce the surgical wound infection rate,such as prophylactic antibiotics and local wound care,including pressure irrigation with 0.9% saline solution,with good results.20The antibacterial effect of lidocaine has been demonstrated in an animal model21;however,no model resembles surgical wound infection and the use of lidocaine to prevent infection.This study aimed to demonstrate that using 2% lidocaine(2 mL/g of tissue)will reduce the E.coli CFUs below 1×105in an infected superficial surgical wound in an experimental model.展开更多
Honey, an apicultural product with a complex chemical composition, contains numerous bioactive compounds with potential antimicrobial effects. This study investigated the effect of Apis mellifera honey from Brazil’s ...Honey, an apicultural product with a complex chemical composition, contains numerous bioactive compounds with potential antimicrobial effects. This study investigated the effect of Apis mellifera honey from Brazil’s Central-West Region, combined with antibiotics, on bacterial membrane permeability, exploring the contributions of bioactive compounds and the botanical origin of honey. Six fresh Apis mellifera honey samples and their fractions (hexane and ethyl acetate) were analyzed, for a total of 18 samples. The bacteria Staphylococcus epidermidis, Helicobacter pylori and Enterococcus faecalis were used for antibacterial activity tests, which included minimum inhibitory concentration (MIC) determination and synergistic effect (checkerboard) assays. The total polyphenol and flavonoid contents were quantified, and the botanical origin was determined based on pollen analysis. The tested honey samples significantly affected bacterial membrane permeability when combined with rifampicin and clarithromycin. Although many honey-derived bioactive compounds, when isolated, did not exhibit significant activity against these bacteria, the additive or synergistic effect of multiple compounds acting on different targets appears to potentiate the antibacterial action. Descriptive statistical analysis, including means and 95% confidence intervals, confirmed the relevance of the findings. This study has provided an important discovery: Honey has an effect on bacterial membrane permeability, although the specific mechanisms involved in this process require further investigation.展开更多
Wild peanut(Arachis)species are promising sources of disease resistance for improving peanut cultivars.The objective of this study was to assess cross-compatibility among cultivated and wild peanuts in crosses between...Wild peanut(Arachis)species are promising sources of disease resistance for improving peanut cultivars.The objective of this study was to assess cross-compatibility among cultivated and wild peanuts in crosses between eight peanut cultivars and 27 wild species carrying the A,B,E,Ex,F,K,P,and H genomes.Embryo culture and chromosome doubling led to polyploids representing hybrids between cultivated peanut and A.stenosperma,A.macedoi,A.duranensis,A.villosa,and A.diogoi.The first two showed greater resistance to bacterial wilt than their cultivated parents.DNA markers were developed for verifying the hybrids and for identifying translocation or introgression lines with alien chromosome fragments.展开更多
Bacterial blight(BB),caused by Xanthomonas oryzae pathovar oryzae(Xoo),poses a significant threat to rice production,particularly in Asia and West Africa.Breeding resistance against BB in elite rice varieties is cruci...Bacterial blight(BB),caused by Xanthomonas oryzae pathovar oryzae(Xoo),poses a significant threat to rice production,particularly in Asia and West Africa.Breeding resistance against BB in elite rice varieties is crucial to advancing rice breeding program and supporting smallholder farmers.Transcription Activator-Like effectors(TALes)are key virulence factors in Xoo,with some targeting the susceptibility(S)genes such as the sugar transporter SWEET genes in rice.Among these,SWEET14 is an important S gene,with its promoter bound by the TALe TalC which exists across all sequenced African Xoo isolates.In the present study,we utilized CRISPR/Cas9-based cytidine and adenine base editors to alter the effector binding element(EBE)of TalC in the promoter of SWEET14 in rice cultivars Kitaake,IR24,and Zhonghua 11.Mutations with C to T changes in EBE led to reduced SWEET14 induction by TalC-containing Xoo strains,resulting in resistance to African Xoo isolates reliant on TalC for virulence.Conversely,A to G changes retained SWEET14 inducibility and susceptibility to Xoo in edited lines.Importantly,no off-target mutations were detected at predicted sites,and the edited lines exhibited no obvious defects in major agronomic traits in Kitaake.These results underscore the effectiveness of base editing systems for both molecular biology research and crop improvement endeavors.展开更多
Adenosine triphosphate(ATP)-binding cassette(ABC)transporter systems are divided into importers and exporters that facilitate the movement of diverse substrate molecules across the lipid bilayer,against the concentrat...Adenosine triphosphate(ATP)-binding cassette(ABC)transporter systems are divided into importers and exporters that facilitate the movement of diverse substrate molecules across the lipid bilayer,against the concentration gradient.These transporters comprise two highly conserved nucleotide-binding domains(NBDs)and two transmembrane domains(TMDs).Unlike ABC exporters,prokaryotic ABC importers require an additional substrate-binding protein(SBP)as a recognition site for specific substrate translocation.The discovery of a large number of ABC systems in bacterial pathogens revealed that these transporters are crucial for the establishment of bacterial infections.The existing literature has highlighted the roles of ABC transporters in bacterial growth,pathogenesis,and virulence.These roles include importing essential nutrients required for a variety of cellular processes and exporting outer membrane-associated virulence factors and antimicrobial substances.This review outlines the general structures and classification of ABC systems to provide a comprehensive view of the activities and roles of ABC transporters associated with bacterial virulence and pathogenesis during infection.展开更多
BACKGROUND Antibiotic resistance is a growing global health threat,and understanding local trends in bacterial isolates and their susceptibility patterns is crucial for effective infection control and antimicrobial st...BACKGROUND Antibiotic resistance is a growing global health threat,and understanding local trends in bacterial isolates and their susceptibility patterns is crucial for effective infection control and antimicrobial stewardship.The coronavirus disease 2019(COVID-19)pandemic has introduced additional complexities,potentially influencing these patterns.AIM To analyze trends in bacterial isolates and their antibiotic susceptibility patterns at Salmaniya Medical Complex from 2018 to 2023,with a specific focus on the impact of the COVID-19 pandemic on these trends.METHODS A retrospective analysis of microbiological data was conducted,covering the period from 2018 to 2023.The study included key bacterial pathogens such as Escherichia coli(E.coli),Klebsiella pneumoniae,Acinetobacter baumannii,Pseudomonas aeruginosa,and Staphylococcus aureus,among others.The antibiotic susceptibility profiles of these isolates were assessed using standard laboratory methods.To contextualize the findings,the findings were compared with similar studies from other regions,including China,India,Romania,Saudi Arabia,the United Arab Emirates,Malaysia,and United States.RESULTS The study revealed fluctuating trends in the prevalence of bacterial isolates,with notable changes during the COVID-19 pandemic.For example,a significant increase in the prevalence of Staphylococcus aureus was observed during the pandemic years,while the prevalence of E.coli showed a more variable pattern.Antibiotic resistance rates varied among the different pathogens,with a concerning rise in resistance to commonly used antibiotics,particularly among Klebsiella pneumoniae and E.coli.Additionally,the study identified an alarming increase in the prevalence of multidrug-resistant(MDR)strains,especially within Klebsiella pneumoniae and E.coli isolates.The impact of the COVID-19 pandemic on these trends was evident,with shifts in the frequency,resistance patterns,and the emergence of MDR bacteria among several key pathogens.CONCLUSION This study highlights the dynamic nature of bacterial isolates and their antibiotic susceptibility patterns at Salmaniya Medical Complex,particularly in the context of the COVID-19 pandemic.The findings underscore the need for continuous monitoring and effective anti-microbial stewardship programs to combat the evolving threat of antibiotic resistance.Further research and policy initiatives are required to address the identified challenges and improve patient outcomes in the face of these ongoing challenges.展开更多
Spontaneous bacterial peritonitis(SBP)is a common complication of liver failure.It is an acute bacterial infection of the ascitic fluid in patients with liver cirrhosis.SBP presents a significant challenge for hepatol...Spontaneous bacterial peritonitis(SBP)is a common complication of liver failure.It is an acute bacterial infection of the ascitic fluid in patients with liver cirrhosis.SBP presents a significant challenge for hepatologists owing to its associated complications.While diagnostic paracentesis with polymorphonuclear count is highly accurate,it can be troublesome for some patients as it is an invasive procedure with associated risks.Several studies have proposed new diagnostic methods to improve current practices,many of which remain invasive.Although some serum tests show promise in the diagnosis of SBP,the results are still preliminary.Recent advancements in artificial intelligence and machine learning have introduced predictive models and scoring systems for diagnosis.However,these models still lack sufficient sensitivity,specificity,and the ability to effe-ctively assess treatment response.展开更多
Peanut(Arachis hypogaea L.)bacterial wilt(BW)is a devastating soil-borne disease caused by Ralstonia solanacearum(RS)that poses a significant threat to peanut yield and quality.Nucleotide-binding leucine-rich repeat(N...Peanut(Arachis hypogaea L.)bacterial wilt(BW)is a devastating soil-borne disease caused by Ralstonia solanacearum(RS)that poses a significant threat to peanut yield and quality.Nucleotide-binding leucine-rich repeat(NBS-LRR)proteins are a class of plant-specific immune receptors that recognize pathogen-secreted effector molecules and activate immune responses to resist pathogen infections.However,the precise functions of AhCN genes(where CN is a class of nucleotide-binding site,leucine-rich repeat receptor(NLR)genes that lack LRR structural domains)in peanut plants are not fully understood.In this study,a total of 150 AhCN genes were identified and classified into nine subfamilies based on a systematic phylogenetic analysis.The AhCN genes showed highly conserved structural features,and the promoter cis-elements indicated involvement in plant hormone signaling and defense responses.After inoculation with RS,the highly resistant peanut variety‘H108’significantly outperformed the susceptible variety‘H107’based on physiological indicators such as plant height,main stem diameter,and fresh weight,likely due to the inhibition of bacterial proliferation and diffusion in the stem vascular bundle.AhCN34 was found to be significantly upregulated in‘H108’compared to‘H107’during plant infection and in response to treatments with each of three plant hormones.Importantly,AhCN34 overexpression in peanut leaves enhanced their resistance to BW.These findings demonstrate the great potential of AhCN34 for applications in peanut resistance breeding.Our identification and characterization of the AhCN genes provide insights into the mechanisms underlying BW resistance in peanut and can inform future research into genetic methods of improving BW resistance in peanut.展开更多
Increasing attention has been paid to radioactive wastewater to direct discharge in Japan or accidental leaks.Strontium-90(90Sr)and Cobalt-60(^(60)Co)are the most hazardous nuclides in waste discharged form nuclear re...Increasing attention has been paid to radioactive wastewater to direct discharge in Japan or accidental leaks.Strontium-90(90Sr)and Cobalt-60(^(60)Co)are the most hazardous nuclides in waste discharged form nuclear reactors.Because of their high solubility and long half-lives,these radioisotopes can persist for hundreds of years before decaying to negligible levels.Herein,a green and biodegradable material nanoscale zero-valent iron(nZVI)supported by bacterial cellulose particles(BCP-nZVI)is constructed for the first time to adsorb Co^(2+)and Sr^(2+)in single and binary systems.BCP-nZVI shows superior adsorption capacities of Co^(2+)and Sr^(2+)in a single system within a wide range of pH values from 5 to 7,while the coexistence of Co^(2+)adsorption inhibits the Sr^(2+)in binary system.Pseudo-second-order dynamics model and Langmuir isothermal model can be indicated the BCP-nZVI adsorption progress with 107.10 mg/g(Co^(2+))and 64.96 mg/g(Sr^(2+))maximum adsorption capacity.BCP-nZVI has outstanding stability,allowing it to be stored for more than one month with compromising its performance.More importantly,BCP-nZVI exhibits exceptional removal efficiency of Co^(2+)(92.53%)and Sr^(2+)(58.62%)removal in natural seawater systems.The mechanism investigation illustrates the high adsorption capacity of BCP-nZVI for Co^(2+)is controlled by redox and hydroxyl complexation.While Sr^(2+)is controlled by hydroxyl complexed adsorption,thus it has weak against interference by cations like Na^(+),Ca^(2+),etc.BCP-nZVI exhibits the advantages of high adsorption capacity,wide pH range,strong stability,and good applicability in natural seawater,which has excellent potential for application in radioactive ions removal.展开更多
Background:Bacterial pneumonia continues to be a significant global health concern,particularly among high-risk groups,necessitating the development of precise and early diagnostic biomarkers.While the efficacy of pro...Background:Bacterial pneumonia continues to be a significant global health concern,particularly among high-risk groups,necessitating the development of precise and early diagnostic biomarkers.While the efficacy of procalcitonin(PCT)and C-reactive protein(CRP)as inflammatory markers is widely recognized,their relative diagnostic performance across different age groups remains debate.This meta-analysis was designed to assess the diagnostic accuracy of PCT and CRP in bacterial pneumonia.Methods:In this meta-analysis adhering to PRISMA guidelines,we searched PubMed,Web of Science,and the Cochrane Library for relevant diagnostic accuracy studies.From 19 included studies(n=2,603),data were extracted to construct tables.Study quality was assessed with the QUADAS-2 tool.The bivariate random-effects model was employed to derive pooled sensitivity,specificity,positive and negative likelihood ratios,and summary AUCs.To explore the substantial heterogeneity(I^(2)>80%),we performed pre-specified subgroup analyses based on age demographics.Results:Our findings indicate superior diagnostic performance for PCT,evidenced by a pooled sensitivity of 0.8841 and specificity of 0.8499,relative to CRP’s sensitivity of 0.8371 and specificity of 0.7185.The area under the ROC curve(AUC)for PCT was 0.992,a value significantly higher than that of CRP(0.987).Intriguingly,subgroup analyses revealed age-dependent variations:CRP demonstrated enhanced diagnostic utility in minors,while PCT proved substantially more effective in non-elderly adults.Conclusion:These results reinforce the clinical relevance of PCT as a more dependable biomarker for bacterial pneumonia,particularly in informing antibiotic treatment and mitigating misuse.This study uniquely includes age-stratified analyses based on predefined groups(minors and non-elderly adults),providing refined insights for individualized diagnostic approaches.We propose further multicenter research endeavors to confirm threshold optimization and explore combined biomarker strategies.展开更多
Elucidating the mechanisms underlying community assembly remains a central question in community ecology,especially in aquatic ecosystems disrupted by human activities.Understanding the causes and consequences of comm...Elucidating the mechanisms underlying community assembly remains a central question in community ecology,especially in aquatic ecosystems disrupted by human activities.Understanding the causes and consequences of community responses to changing environment is essential for revealing the ecological effects of anthropogenic disturbances and proposing practical strategies for ecological restoration.While stochastic dispersal and species sorting are known to influence local biological communities,most studies have focused on horizontal dispersal,often neglecting the vertical exchange of organisms between planktonic and sedimentary communities when studying stochastic dispersal.We used a highly disturbed urban river in Beijing as a model system to investigate the relative roles of stochastic dispersal versus species sorting driven by local pollution,as well as two components of stochastic dispersal,vertical exchange and horizontal dispersal,in structuring local bacterial communities.Our integrated analyses of planktonic and sedimentary bacterial communities revealed that,despite different spatial patterns along the river,both types of bacterial communities were primarily shaped by stochastic dispersal processes rather than species sorting influenced by the environmental gradient.Notably,in addition to the effect of horizontal dispersal along the river,the vertical exchange between planktonic and sedimentary bacterial communities significantly contributed to the formation of local communities.These findings suggest that both vertical exchange and horizontal dispersal should be considered when assessing the role of stochastic dispersal in shaping local community structure in microbial communities.展开更多
The rhizosphere bacteria play crucial roles in plant health and growth as they are involved in assimilating nutrients and resisting adverse conditions such as nutrient stress,drought,and wind erosion.Agriophyllum squa...The rhizosphere bacteria play crucial roles in plant health and growth as they are involved in assimilating nutrients and resisting adverse conditions such as nutrient stress,drought,and wind erosion.Agriophyllum squarrosum(L.)Moq.is a pioneer plant used in sand fixation due to its strong resistance to drought and wind erosion.However,the bacterial community characteristics and ecological function in the rhizosphere of A.squarrosum are poorly understood.In this study,soil samples were collected from different developmental stages(seedling stage,vegetative stage,reproductive stage,and withering stage)of A.squarrosum.Illumina Miseq sequencing was used to detect differences in soil bacterial abundance.The Phylogenetic Investigation of Communities by Reconstruction of Unobserved States(PICRUSt)program was used to predict bacterial functions,and the relationships among bacteria,functional populations,and soil nutrients were examined using a heatmap analysis.The results showed that the Shannon and Sobs indices of rhizosphere bacteria were significantly higher during the reproductive stage than during the other stages.Pantoea sp.(7.03%)was the dominant genus during the seedling stage;Arthrobacter sp.was the dominant genus during the vegetative(13.94%),reproductive(7.57%),and withering(12.30%)stages.The relative abundances of Chloroflexi,Acidobacteria,and Gemmatimonadetes were significantly high during the reproductive stage.According to the PICRUSt analysis,membrane transport,signal transduction,and environmental adaptation of the bacterial functional population occurred during the seedling stage.Carbohydrate metabolism increased during the vegetative stage,while energy metabolism,lipid metabolism,and biosynthesis of other secondary metabolites of the bacterial functional population significantly increased during the reproductive stage.The abundances of bacterial communities,functional genes,and soil nutrients were synergistically altered during various developmental stages.Our findings suggest that the developmental stages of A.squarrosum play a significant role in defining the composition and structure of bacterial communities in the rhizosphere.The results will provide a basis for better prediction and understanding of soil bacterial metabolic potential and functions of A.squarrosum rhizosphere in sandy areas.展开更多
Bacterial communities play a crucial role in permafrost biogeochemical cycling and ecosystem function maintenance.Bacterial interaction is one of the main factors in shaping soil bacterial communities.However,how woul...Bacterial communities play a crucial role in permafrost biogeochemical cycling and ecosystem function maintenance.Bacterial interaction is one of the main factors in shaping soil bacterial communities.However,how would bacterial interaction influence the bacterial communities in permafrost of the Qinghai-Tibet Plateau(QTP)remains largely unknown.Here we collected paired soil samples from both the active and permafrost layers of two typical QTP permafrost regions in October 2020 for Tuotuohe River(TTH)and May 2022 for Aerjin(ARJ),and investigated the bacterial communities and the role of interactions in structuring the bacterial community and its assembly process through amplicon sequencing of the 16S rRNA gene.Our study revealed distinct bacterial communities,with significant differences in the relative abundances of Proteobacteria(P<0.05),Acidobacteriota(P<0.001),Bacteroidota(P<0.05),and Planctomycetota(P<0.001)between the active layer and the permafrost layer.More importantly,we found that interspecies interactions,including both positive and negative associations,were strongly correlated with bacterial alpha-diversity and played a significant role in community variation and assembly process.Our findings also showed that the community assembly in both the active and permafrost layers was primarily driven by homogeneous selection of deterministic processes,with interspecies interactions accounting for more than 58%and 63%of all assembly mechanisms,respectively.This is the first study to quantify the contribution of bacterial interactions in shaping the bacterial community and its assembly process in permafrost of QTP,highlighting the importance of considering interspecies interactions in future modeling efforts.Our work also emphasizes the necessity of including interspecies interactions in microbial process projections to reduce uncertainty.展开更多
Ambient temperature affects the occurrence and prevalence of plant disease.Most bacterial diseases are damaging at high temperatures.However,kiwifruit bacterial canker caused by Pseudomonas syringae pv.actinidiae(Psa)...Ambient temperature affects the occurrence and prevalence of plant disease.Most bacterial diseases are damaging at high temperatures.However,kiwifruit bacterial canker caused by Pseudomonas syringae pv.actinidiae(Psa)has been found to be prevalent at relatively cool temperatures,and it is unclear how ambient temperature affects the development of kiwifruit bacterial canker.In this study,basal resistance to Psa was suppressed in kiwifruit at cool growth temperature(16℃)compared with at normal temperature(24℃).In addition,RNA sequence analysis and ethylene content assessment indicated that ethylene modulated kiwifruit resistance to Psa at normal growth temperature and that cool temperature inhibited ethylene accumulation and Psa-induced activation of the ethylene signaling pathway in kiwifruit.Virusmediated silencing of the kiwifruit ethylene signaling gene AcEIN2 suppressed kiwifruit resistance to Psa at normal growth temperature.Exogenous application of ethylene inhibitor 1-methylcyclopropene eliminated the difference in kiwifruit resistance to Psa at 16 and 24℃.Exogenous application of ethylene analogues ethephon induced resistance to Psa in kiwifruit.In conclusion,cool temperatures impair basal resistance to Psa by reducing the activation of ethylene biosynthesis and signaling in kiwifruit.The results provide clues for new strategies to control plant diseases in a context of global environmental change.展开更多
Bacterial wilt(BW)caused by Ralstonia solanacearum is a wide-spread and serious disease in peanut.To date,this soilborne disease could only be effectively controlled by planting resistant peanut cultivars.However,the ...Bacterial wilt(BW)caused by Ralstonia solanacearum is a wide-spread and serious disease in peanut.To date,this soilborne disease could only be effectively controlled by planting resistant peanut cultivars.However,the relatively lower yield potential of the available BW-resistant peanut cultivars is a key reason restricting productivity in most epidemic regions naturally infested with the pathogen.Even small pods or seeds and low number per plant has been regarded as the key factor for the low yield potential both in BW-resistant peanut germplasm lines and available released cultivars,whether the resistance is closely linked with key yield components remains unclear.In this study,the relationship between pod weight and BW resistance was analyzed by using a recombinant inbred lines(RIL)population derived from a crossing combination between a high yielding cultivar Xuhua 13 and a BW-resistant cultivar Zhonghua 6.From the experiments,it was found that the BW resistance was not significantly correlated with pod number per plant(PNP),hundred pod weight(HPW)and pod weight per plant(PWP)in the RIL population.Based on linkage analysis,the quantitative trait locus(QTL)s related to PNP were identified on A06,A07,A08 and B03.The QTLs for HPW were detected on A05 and A07,and the QTLs for PWP were on A06,A07 and B03.However,the QTL for BW resistance identified on B02.These results indicated that the BW resistance and the pod number per plant as well as pod weight were inherited independently.Two recombined lines(QT0944 and QT1028)with high level BW resistance and large pods(hundred pod weight over 185g)were identified from the RILs,and they possessed the favored alleles of identified QTLs from both parents,which could be used in peanut breeding for high yield and high level disease resistance.展开更多
Magnaporthe oryzae,the causal agent of rice blast,induces significant upregulation of OsPR10b,a pathogenesis-related(PR)pollen allergen(BetV-1)family gene.To investigate its role in immunity,we generated OsPR10b knock...Magnaporthe oryzae,the causal agent of rice blast,induces significant upregulation of OsPR10b,a pathogenesis-related(PR)pollen allergen(BetV-1)family gene.To investigate its role in immunity,we generated OsPR10b knockout mutants in the Zhonghua 11(ZH11)background.OsPR10b was predominantly expressed in rice calli and strongly induced by M.oryzae infection.Knockout mutants(ospr10b-1 and ospr10b-2)exhibited heightened susceptibility to both M.oryzae and Xanthomonas oryzae pv.oryzae(Xoo),demonstrating that OsPR10b positively regulates resistance to blast and bacterial blight.Our findings elucidate OsPR10b’s role in rice immunity and provide genetic resources for disease-resistant breeding.展开更多
Coral gardening has become a promising technique for restoring reefs worldwide in the Anthropocene era.The microbiome plays an important role in enhancing adaptive resilience in situ nursery propagation of corals.Howe...Coral gardening has become a promising technique for restoring reefs worldwide in the Anthropocene era.The microbiome plays an important role in enhancing adaptive resilience in situ nursery propagation of corals.However,little is known about the response patterns of bacterial community dynamics,co-occurrence networks and assembly processes of different species in coral restoration nurseries over time.Here,we collected two Acropora coral samples from transplanted fragments and source colonies at 1-month and 3-month post-transplantation(May and July 2022)in an upwelling-affected fragmented reef.Full-length 16S rRNA gene sequencing revealed that bacterial communities of coral fragments in nurseries exhibited consistent temporal shifts compared to those of the source colonies.High host specificity was observed in the bacterial community and network structure associated with source colonies.In contrast,for the two coral species within nurseries,there were no differences in bacterial diversity,composition and core microbiome.Stochastic assembly processes were identified as the primary drivers of bacterial communities in all May samples,whereas deterministic processes played a more prominent role in July.Seawater properties(e.g.,temperature and ammonium concentration)partially explained the compositional changes in the bacterial communities of these coral samples.Our findings suggested that coral nurseries contributed to the homogenization of bacterial communities in different Acropora corals,despite the apparent temporal dynamics of bacteria.These results enhance our understanding of the coral microbiome,ecological interactions and assembly principles in different host within in situ nurseries.展开更多
The application of modified biochar has been proven to be a novel and promising strategy to improve saline-alkali soil.However,the effect of iron-modified biochar(FB)on the chemical properties of saline-alkali soil at...The application of modified biochar has been proven to be a novel and promising strategy to improve saline-alkali soil.However,the effect of iron-modified biochar(FB)on the chemical properties of saline-alkali soil at different depths remains unclear.Therefore,we designed a soil column and divided it into three consecutive parts(i.e.,topsoil,middle soil,and subsoil)to explore the amelioration effects of biochar on saline-alkali soil chemical properties and bacterial communities along a depth gradient in the treatments amended with 0.5%(weight/weight)pristine biochar(PB),1%(weight:weight)PB,0.5%(weight:weight)FB,and 1%(weight:weight)FB and without biochar(control,CK).The results showed that soil chemical properties were significantly improved with 1%FB application,while the amelioration effect of FB was different between the topsoil and subsoil.The activities of extracellular enzymes significantly increased in the topsoil and base cations decreased in the subsoil in the FB treatment compared with CK.Moreover,the abundances of halophilic taxa were higher in the subsoil than in the topsoil,especially for Bacteroidetes and Deinococcota.Furthermore,the abundances of beneficial bacteria(e.g.,c_Alphaproteobacteria,Sphingomonas,and Pontibacter)in saline-alkali soil increased in the FB treatment compared with CK.Our results suggest the ameliorative effect of FB on soil properties and bacterial communities along a soil depth gradient,providing a novel strategy for improving saline-alkali soil with biochar.展开更多
基金supported by the National Natural Science Foundation of China(Nos.32371734,42007034,41920104008,and U22A20593)the Strategic Priority Research Program of Chinese Academy of Sciences(No.XDA28020400)+2 种基金the Youth Innovation Promotion Association of Chinese Academy of Sciences(No.2023205)the Young Scientist Group Project of Northeast Institute of Geography and Agroecology of China(No.2022QNXZ04)the Science and Technology Development Project of Jilin Province of China(No.YDZJ202101ZYTS006).
文摘The conversion of saline-alkali soils into paddy fields for long-term rice cultivation involves multiple disturbances,and as a result,soil microbial communities are altered to adapt to changing environmental conditions.However,a comprehensive understanding of the succession of soil bacterial communities that occurs during this process is still lacking.In the present study,we utilized data obtained from paddy fields of different rice cultivation years(0-23 years)to investigate the compositional and functional succession of soil bacterial communities.We focused on core bacterial taxa that were specifically enriched at different successional stages.Generalized joint attribute modeling(GJAM)was used to identify core bacterial taxa.Results indicated that the bare saline-alkali soil(0 year,prior to any rice cultivation)shared few core amplicon sequence variants(ASVs)with paddy fields.In the bare saline-alkali soil,Longimicrobiaceae from the phylum Gemmatimonadetes was dominant,while the dominance was subsequently replaced by Burkholderiaceae and Pedosphaeraceae--phyla affiliated with Proteobacteria and Verrucomicrobia--after 5 and 23 years of rice cultivation,respectively.The relative abundances of nitrogen metabolism functions in the core bacterial communities of the bare saline-alkali soil were higher than those at other successional stages,while sulfur metabolism functions exhibited the opposite trend.These indicated that the role of the core bacterial taxa in mediating nutrient cycling also evolved and adapted to changing soil conditions as rice cultivation was established.Redundancy analysis(RDA)indicated that the composition of the core bacterial community in paddy fields with rice cultivation for 0,2 and 4,6,8,10,and 12,and 20 and 23 years were driven by soil nitrate nitrogen content,pH,available phosphorus content,and the ratio of total carbon to total nitrogen,respectively.In summary,the present study provides insights into the succession of soil bacterial communities and core bacterial taxa that occurs during long-term rice cultivation.
基金financially supported by the National Natural Science Foundation of China(No.32172855)Fundamental Research Funds for the Central Universities(Nos.2632024ZD07,2632024TD02)the Open Project of Jiangsu Provincial Science and Technology Resources(Clinical Resources)Coordination Service Platform(No.TC2023B001)。
文摘The presence of the blood–brain barrier limits the drug concentration in the brain,while low concentrations of antibiotics make it difficult to kill infecting bacteria and tends to induce drug resistance,making the clinical treatment of bacterial meningitis challenging.Herein,a nose-to-brain delivery strategy of small-sized nanozyme has been fabricated for combating bacterial meningitis,to overcome the low drug concentration and drug resistance.This strategy was achieved by a proteinsupported Au nanozyme(ANZ).With a particle size of less than 10 nm,it possesses both glucose oxidase-like and peroxidase-like activities and can generate large amounts of reactive oxygen species through a cascade effect without the addition of external H_(2)O_(2).Benefiting from the cascade catalytic amplification effect generated by its dual enzymelike activities,ANZ shows significant broad-spectrum antibacterial activity without inducing bacterial resistance in vitro.Notably,small-sized ANZ exhibits higher brain entry efficiency and greater accumulation after intranasal administration compared to oral or intravenous administration.In a mouse model of bacterial meningitis,the mice treated with ANZ had lower bacterial loads in the brain and higher survival and clinical behavior scores compared to the classical antibiotic ceftriaxone.Additionally,the meningitis mice exhibited undamaged cognitive and behavioral abilities,indicating the excellent biocompatibility of ANZ.The above results demonstrate that nose-to-brain delivery of ANZ exhibits high intracerebral accumulation,strong antibacterial efficacy and does not lead to bacterial resistance.It holds broad prospects for the treatment of bacterial meningitis.
文摘This study evaluated the antibacterial effects of 2%lidocaine and its combination with 0.9%saline solution on Escherichia coli infection in superficial surgical wounds in Wistar rats.The goal was to determine if these treatments could effectively reduce E.coli Colony Forming Units(CFUs)below the critical threshold of 1×105.Seventy male Wistar rats were divided into seven groups,each undergoing different interventions to assess the antibacterial efficacy of lidocaine,with outcomes measured through bacterial cultures and CFU quantification.Results demonstrated a Log10reduction of approximately 0.44 in E.coli CFUs following infiltration with 2%lidocaine.The combined use of 2%lidocaine infiltration and 0.9%saline irrigation resulted in nearly complete suppression of bacterial growth.These findings suggest that these simple interventions could be valuable in emergency surgical settings to mitigate the risk of surgical site infections and serve as effective prophylactic measures.increase in hospital stay,which represents an additional cost in terms of expenses and directly impacts the patient's outcome.11Several lines of evidence point to 104colony forming units per gram of tissue(CFUs/g)as the threshold at which healing generally begins to slow.12Knowledge of the antibacterial activity of lidocaine has been used to prevent bacterial contamination of other lipid-based anesthetics,such as propofol,with a significant decrease in bacterial development13-15and its antifungal effect.15,16Other effects attributed to lidocaine concerning systemic inflammatory response are the inhibition of granulocyte adhesion at sites of inflammation,decreased leukocyte adhesion during endotoxemia,and decreased macromolecular filtration;it is suggested that it may play a therapeutic role in endothelial damage during sepsis.17-19On the other hand,different measures have been taken to reduce the surgical wound infection rate,such as prophylactic antibiotics and local wound care,including pressure irrigation with 0.9% saline solution,with good results.20The antibacterial effect of lidocaine has been demonstrated in an animal model21;however,no model resembles surgical wound infection and the use of lidocaine to prevent infection.This study aimed to demonstrate that using 2% lidocaine(2 mL/g of tissue)will reduce the E.coli CFUs below 1×105in an infected superficial surgical wound in an experimental model.
文摘Honey, an apicultural product with a complex chemical composition, contains numerous bioactive compounds with potential antimicrobial effects. This study investigated the effect of Apis mellifera honey from Brazil’s Central-West Region, combined with antibiotics, on bacterial membrane permeability, exploring the contributions of bioactive compounds and the botanical origin of honey. Six fresh Apis mellifera honey samples and their fractions (hexane and ethyl acetate) were analyzed, for a total of 18 samples. The bacteria Staphylococcus epidermidis, Helicobacter pylori and Enterococcus faecalis were used for antibacterial activity tests, which included minimum inhibitory concentration (MIC) determination and synergistic effect (checkerboard) assays. The total polyphenol and flavonoid contents were quantified, and the botanical origin was determined based on pollen analysis. The tested honey samples significantly affected bacterial membrane permeability when combined with rifampicin and clarithromycin. Although many honey-derived bioactive compounds, when isolated, did not exhibit significant activity against these bacteria, the additive or synergistic effect of multiple compounds acting on different targets appears to potentiate the antibacterial action. Descriptive statistical analysis, including means and 95% confidence intervals, confirmed the relevance of the findings. This study has provided an important discovery: Honey has an effect on bacterial membrane permeability, although the specific mechanisms involved in this process require further investigation.
基金supported by National Natural Science Foundation of China(32272153)Henan Province Science and Technology R&D Joint Fund(232301420025)+4 种基金National Key Research and Development Program of China(2023YFD1200200)the Key Research Project of the Shennong Laboratory(SN01-2022-03)Independent Innovation Foundation of Henan Academy of Agricultural Sciences(2024ZC024)China Agriculture Research System(CARS-13)Henan Provincial Agriculture Research System(S2012-5).
文摘Wild peanut(Arachis)species are promising sources of disease resistance for improving peanut cultivars.The objective of this study was to assess cross-compatibility among cultivated and wild peanuts in crosses between eight peanut cultivars and 27 wild species carrying the A,B,E,Ex,F,K,P,and H genomes.Embryo culture and chromosome doubling led to polyploids representing hybrids between cultivated peanut and A.stenosperma,A.macedoi,A.duranensis,A.villosa,and A.diogoi.The first two showed greater resistance to bacterial wilt than their cultivated parents.DNA markers were developed for verifying the hybrids and for identifying translocation or introgression lines with alien chromosome fragments.
基金supported by a sub-award to the University of Missouri from the Heinrich Heine University of Dusseldorf funded by the Bill&Melinda Gates Foundation(OPP1155704)(Bing Yang)and the China Scholar Council(Chenhao Li,as a joint Ph.D.student).
文摘Bacterial blight(BB),caused by Xanthomonas oryzae pathovar oryzae(Xoo),poses a significant threat to rice production,particularly in Asia and West Africa.Breeding resistance against BB in elite rice varieties is crucial to advancing rice breeding program and supporting smallholder farmers.Transcription Activator-Like effectors(TALes)are key virulence factors in Xoo,with some targeting the susceptibility(S)genes such as the sugar transporter SWEET genes in rice.Among these,SWEET14 is an important S gene,with its promoter bound by the TALe TalC which exists across all sequenced African Xoo isolates.In the present study,we utilized CRISPR/Cas9-based cytidine and adenine base editors to alter the effector binding element(EBE)of TalC in the promoter of SWEET14 in rice cultivars Kitaake,IR24,and Zhonghua 11.Mutations with C to T changes in EBE led to reduced SWEET14 induction by TalC-containing Xoo strains,resulting in resistance to African Xoo isolates reliant on TalC for virulence.Conversely,A to G changes retained SWEET14 inducibility and susceptibility to Xoo in edited lines.Importantly,no off-target mutations were detected at predicted sites,and the edited lines exhibited no obvious defects in major agronomic traits in Kitaake.These results underscore the effectiveness of base editing systems for both molecular biology research and crop improvement endeavors.
基金supported by the Universiti Kebangsaan Malaysia under the Research University Grant(No.GUP-2020-030)awarded to Sylvia CHIENG.
文摘Adenosine triphosphate(ATP)-binding cassette(ABC)transporter systems are divided into importers and exporters that facilitate the movement of diverse substrate molecules across the lipid bilayer,against the concentration gradient.These transporters comprise two highly conserved nucleotide-binding domains(NBDs)and two transmembrane domains(TMDs).Unlike ABC exporters,prokaryotic ABC importers require an additional substrate-binding protein(SBP)as a recognition site for specific substrate translocation.The discovery of a large number of ABC systems in bacterial pathogens revealed that these transporters are crucial for the establishment of bacterial infections.The existing literature has highlighted the roles of ABC transporters in bacterial growth,pathogenesis,and virulence.These roles include importing essential nutrients required for a variety of cellular processes and exporting outer membrane-associated virulence factors and antimicrobial substances.This review outlines the general structures and classification of ABC systems to provide a comprehensive view of the activities and roles of ABC transporters associated with bacterial virulence and pathogenesis during infection.
文摘BACKGROUND Antibiotic resistance is a growing global health threat,and understanding local trends in bacterial isolates and their susceptibility patterns is crucial for effective infection control and antimicrobial stewardship.The coronavirus disease 2019(COVID-19)pandemic has introduced additional complexities,potentially influencing these patterns.AIM To analyze trends in bacterial isolates and their antibiotic susceptibility patterns at Salmaniya Medical Complex from 2018 to 2023,with a specific focus on the impact of the COVID-19 pandemic on these trends.METHODS A retrospective analysis of microbiological data was conducted,covering the period from 2018 to 2023.The study included key bacterial pathogens such as Escherichia coli(E.coli),Klebsiella pneumoniae,Acinetobacter baumannii,Pseudomonas aeruginosa,and Staphylococcus aureus,among others.The antibiotic susceptibility profiles of these isolates were assessed using standard laboratory methods.To contextualize the findings,the findings were compared with similar studies from other regions,including China,India,Romania,Saudi Arabia,the United Arab Emirates,Malaysia,and United States.RESULTS The study revealed fluctuating trends in the prevalence of bacterial isolates,with notable changes during the COVID-19 pandemic.For example,a significant increase in the prevalence of Staphylococcus aureus was observed during the pandemic years,while the prevalence of E.coli showed a more variable pattern.Antibiotic resistance rates varied among the different pathogens,with a concerning rise in resistance to commonly used antibiotics,particularly among Klebsiella pneumoniae and E.coli.Additionally,the study identified an alarming increase in the prevalence of multidrug-resistant(MDR)strains,especially within Klebsiella pneumoniae and E.coli isolates.The impact of the COVID-19 pandemic on these trends was evident,with shifts in the frequency,resistance patterns,and the emergence of MDR bacteria among several key pathogens.CONCLUSION This study highlights the dynamic nature of bacterial isolates and their antibiotic susceptibility patterns at Salmaniya Medical Complex,particularly in the context of the COVID-19 pandemic.The findings underscore the need for continuous monitoring and effective anti-microbial stewardship programs to combat the evolving threat of antibiotic resistance.Further research and policy initiatives are required to address the identified challenges and improve patient outcomes in the face of these ongoing challenges.
文摘Spontaneous bacterial peritonitis(SBP)is a common complication of liver failure.It is an acute bacterial infection of the ascitic fluid in patients with liver cirrhosis.SBP presents a significant challenge for hepatologists owing to its associated complications.While diagnostic paracentesis with polymorphonuclear count is highly accurate,it can be troublesome for some patients as it is an invasive procedure with associated risks.Several studies have proposed new diagnostic methods to improve current practices,many of which remain invasive.Although some serum tests show promise in the diagnosis of SBP,the results are still preliminary.Recent advancements in artificial intelligence and machine learning have introduced predictive models and scoring systems for diagnosis.However,these models still lack sufficient sensitivity,specificity,and the ability to effe-ctively assess treatment response.
基金supported by the grants from the National Natural Science Foundation of China(NSFC)-Henan United Fund(U22A20475 and U1704232)the Key Scientific and Technological Project of Henan Province,China(221111110500,161100111000,and HARS-22-05-G1)+2 种基金the Innovation Scientists and Technicians Troop Construction Projects of Henan Province,China(2018JR0001)the Henan Agricultural University High Level Talent Special Support Fund,China(30501418)the Key Scientific Research Project in Colleges and Universities of Henan Province,China(21A210018).
文摘Peanut(Arachis hypogaea L.)bacterial wilt(BW)is a devastating soil-borne disease caused by Ralstonia solanacearum(RS)that poses a significant threat to peanut yield and quality.Nucleotide-binding leucine-rich repeat(NBS-LRR)proteins are a class of plant-specific immune receptors that recognize pathogen-secreted effector molecules and activate immune responses to resist pathogen infections.However,the precise functions of AhCN genes(where CN is a class of nucleotide-binding site,leucine-rich repeat receptor(NLR)genes that lack LRR structural domains)in peanut plants are not fully understood.In this study,a total of 150 AhCN genes were identified and classified into nine subfamilies based on a systematic phylogenetic analysis.The AhCN genes showed highly conserved structural features,and the promoter cis-elements indicated involvement in plant hormone signaling and defense responses.After inoculation with RS,the highly resistant peanut variety‘H108’significantly outperformed the susceptible variety‘H107’based on physiological indicators such as plant height,main stem diameter,and fresh weight,likely due to the inhibition of bacterial proliferation and diffusion in the stem vascular bundle.AhCN34 was found to be significantly upregulated in‘H108’compared to‘H107’during plant infection and in response to treatments with each of three plant hormones.Importantly,AhCN34 overexpression in peanut leaves enhanced their resistance to BW.These findings demonstrate the great potential of AhCN34 for applications in peanut resistance breeding.Our identification and characterization of the AhCN genes provide insights into the mechanisms underlying BW resistance in peanut and can inform future research into genetic methods of improving BW resistance in peanut.
基金supported by the National Natural Science Foundation of China(Nos.51778618 and 52070192)the State Key Laboratory of Materials-Oriented Chemical Engineering(No.SKL-MCE-23B09)the open fund of Information Materials and Intelligent Sensing Laboratory of Anhui Province(No.IMIS202213).
文摘Increasing attention has been paid to radioactive wastewater to direct discharge in Japan or accidental leaks.Strontium-90(90Sr)and Cobalt-60(^(60)Co)are the most hazardous nuclides in waste discharged form nuclear reactors.Because of their high solubility and long half-lives,these radioisotopes can persist for hundreds of years before decaying to negligible levels.Herein,a green and biodegradable material nanoscale zero-valent iron(nZVI)supported by bacterial cellulose particles(BCP-nZVI)is constructed for the first time to adsorb Co^(2+)and Sr^(2+)in single and binary systems.BCP-nZVI shows superior adsorption capacities of Co^(2+)and Sr^(2+)in a single system within a wide range of pH values from 5 to 7,while the coexistence of Co^(2+)adsorption inhibits the Sr^(2+)in binary system.Pseudo-second-order dynamics model and Langmuir isothermal model can be indicated the BCP-nZVI adsorption progress with 107.10 mg/g(Co^(2+))and 64.96 mg/g(Sr^(2+))maximum adsorption capacity.BCP-nZVI has outstanding stability,allowing it to be stored for more than one month with compromising its performance.More importantly,BCP-nZVI exhibits exceptional removal efficiency of Co^(2+)(92.53%)and Sr^(2+)(58.62%)removal in natural seawater systems.The mechanism investigation illustrates the high adsorption capacity of BCP-nZVI for Co^(2+)is controlled by redox and hydroxyl complexation.While Sr^(2+)is controlled by hydroxyl complexed adsorption,thus it has weak against interference by cations like Na^(+),Ca^(2+),etc.BCP-nZVI exhibits the advantages of high adsorption capacity,wide pH range,strong stability,and good applicability in natural seawater,which has excellent potential for application in radioactive ions removal.
基金supported by the National Natural Science Foundation of China(82360801,82460822)Natural Science Foundation of Inner Mongolia Autonomous Region(2022LHQN08001,2023QN08050,2025LHMS08061)+4 种基金the Scientific Research Project of Higher Education Institutions in Inner Mongolia Autonomous Region(NJZY23135)the Laboratory Open Fund of Inner Mongolia Medical University(2024ZN23)and the General Project of Inner Mongolia Medical University(YKD2025MS047Inner Mongolia Medical University Undergraduate Science and Technology Innovation"Talent Cultivation"Project(YCPY2025028,YCPY2025024)Inner Mongolia Medical University Undergraduate Innovation and Entrepreneurship Training Program Project(101322025034).
文摘Background:Bacterial pneumonia continues to be a significant global health concern,particularly among high-risk groups,necessitating the development of precise and early diagnostic biomarkers.While the efficacy of procalcitonin(PCT)and C-reactive protein(CRP)as inflammatory markers is widely recognized,their relative diagnostic performance across different age groups remains debate.This meta-analysis was designed to assess the diagnostic accuracy of PCT and CRP in bacterial pneumonia.Methods:In this meta-analysis adhering to PRISMA guidelines,we searched PubMed,Web of Science,and the Cochrane Library for relevant diagnostic accuracy studies.From 19 included studies(n=2,603),data were extracted to construct tables.Study quality was assessed with the QUADAS-2 tool.The bivariate random-effects model was employed to derive pooled sensitivity,specificity,positive and negative likelihood ratios,and summary AUCs.To explore the substantial heterogeneity(I^(2)>80%),we performed pre-specified subgroup analyses based on age demographics.Results:Our findings indicate superior diagnostic performance for PCT,evidenced by a pooled sensitivity of 0.8841 and specificity of 0.8499,relative to CRP’s sensitivity of 0.8371 and specificity of 0.7185.The area under the ROC curve(AUC)for PCT was 0.992,a value significantly higher than that of CRP(0.987).Intriguingly,subgroup analyses revealed age-dependent variations:CRP demonstrated enhanced diagnostic utility in minors,while PCT proved substantially more effective in non-elderly adults.Conclusion:These results reinforce the clinical relevance of PCT as a more dependable biomarker for bacterial pneumonia,particularly in informing antibiotic treatment and mitigating misuse.This study uniquely includes age-stratified analyses based on predefined groups(minors and non-elderly adults),providing refined insights for individualized diagnostic approaches.We propose further multicenter research endeavors to confirm threshold optimization and explore combined biomarker strategies.
基金supported by the National Natural Science Foundation of China(No.32471608)the Open Project of Key Laboratory of Environmental Biotechnology,CAS(No.kf2020002)Yunnan Collaborative Innovation Center for Plateau Lake Ecology and Environmental Health.
文摘Elucidating the mechanisms underlying community assembly remains a central question in community ecology,especially in aquatic ecosystems disrupted by human activities.Understanding the causes and consequences of community responses to changing environment is essential for revealing the ecological effects of anthropogenic disturbances and proposing practical strategies for ecological restoration.While stochastic dispersal and species sorting are known to influence local biological communities,most studies have focused on horizontal dispersal,often neglecting the vertical exchange of organisms between planktonic and sedimentary communities when studying stochastic dispersal.We used a highly disturbed urban river in Beijing as a model system to investigate the relative roles of stochastic dispersal versus species sorting driven by local pollution,as well as two components of stochastic dispersal,vertical exchange and horizontal dispersal,in structuring local bacterial communities.Our integrated analyses of planktonic and sedimentary bacterial communities revealed that,despite different spatial patterns along the river,both types of bacterial communities were primarily shaped by stochastic dispersal processes rather than species sorting influenced by the environmental gradient.Notably,in addition to the effect of horizontal dispersal along the river,the vertical exchange between planktonic and sedimentary bacterial communities significantly contributed to the formation of local communities.These findings suggest that both vertical exchange and horizontal dispersal should be considered when assessing the role of stochastic dispersal in shaping local community structure in microbial communities.
基金supported by the Natural Science Foundation Project of Inner Mongolia Autonomous Region(2024LHMS03017)Research Capacity Enhancement“Unveiling and Leading”Project of Inner Mongolia Forestry Science Research Institute(2024NLTS03).
文摘The rhizosphere bacteria play crucial roles in plant health and growth as they are involved in assimilating nutrients and resisting adverse conditions such as nutrient stress,drought,and wind erosion.Agriophyllum squarrosum(L.)Moq.is a pioneer plant used in sand fixation due to its strong resistance to drought and wind erosion.However,the bacterial community characteristics and ecological function in the rhizosphere of A.squarrosum are poorly understood.In this study,soil samples were collected from different developmental stages(seedling stage,vegetative stage,reproductive stage,and withering stage)of A.squarrosum.Illumina Miseq sequencing was used to detect differences in soil bacterial abundance.The Phylogenetic Investigation of Communities by Reconstruction of Unobserved States(PICRUSt)program was used to predict bacterial functions,and the relationships among bacteria,functional populations,and soil nutrients were examined using a heatmap analysis.The results showed that the Shannon and Sobs indices of rhizosphere bacteria were significantly higher during the reproductive stage than during the other stages.Pantoea sp.(7.03%)was the dominant genus during the seedling stage;Arthrobacter sp.was the dominant genus during the vegetative(13.94%),reproductive(7.57%),and withering(12.30%)stages.The relative abundances of Chloroflexi,Acidobacteria,and Gemmatimonadetes were significantly high during the reproductive stage.According to the PICRUSt analysis,membrane transport,signal transduction,and environmental adaptation of the bacterial functional population occurred during the seedling stage.Carbohydrate metabolism increased during the vegetative stage,while energy metabolism,lipid metabolism,and biosynthesis of other secondary metabolites of the bacterial functional population significantly increased during the reproductive stage.The abundances of bacterial communities,functional genes,and soil nutrients were synergistically altered during various developmental stages.Our findings suggest that the developmental stages of A.squarrosum play a significant role in defining the composition and structure of bacterial communities in the rhizosphere.The results will provide a basis for better prediction and understanding of soil bacterial metabolic potential and functions of A.squarrosum rhizosphere in sandy areas.
基金supported by grants from the National Natural Science Foundation of China for Excellent Young Scientists Fund Program(No.42222105)the National Natural Science Foundation of China General Program(No.42171144)+1 种基金the Assessment of Ecosystem Carbon Stock and Turnover Patterns in Qinghai Province(No.2021-SFA7-1-1)the Second Tibetan Plateau Scientific Expedition and Research Program(STEP)(No.2021QZKK0100)。
文摘Bacterial communities play a crucial role in permafrost biogeochemical cycling and ecosystem function maintenance.Bacterial interaction is one of the main factors in shaping soil bacterial communities.However,how would bacterial interaction influence the bacterial communities in permafrost of the Qinghai-Tibet Plateau(QTP)remains largely unknown.Here we collected paired soil samples from both the active and permafrost layers of two typical QTP permafrost regions in October 2020 for Tuotuohe River(TTH)and May 2022 for Aerjin(ARJ),and investigated the bacterial communities and the role of interactions in structuring the bacterial community and its assembly process through amplicon sequencing of the 16S rRNA gene.Our study revealed distinct bacterial communities,with significant differences in the relative abundances of Proteobacteria(P<0.05),Acidobacteriota(P<0.001),Bacteroidota(P<0.05),and Planctomycetota(P<0.001)between the active layer and the permafrost layer.More importantly,we found that interspecies interactions,including both positive and negative associations,were strongly correlated with bacterial alpha-diversity and played a significant role in community variation and assembly process.Our findings also showed that the community assembly in both the active and permafrost layers was primarily driven by homogeneous selection of deterministic processes,with interspecies interactions accounting for more than 58%and 63%of all assembly mechanisms,respectively.This is the first study to quantify the contribution of bacterial interactions in shaping the bacterial community and its assembly process in permafrost of QTP,highlighting the importance of considering interspecies interactions in future modeling efforts.Our work also emphasizes the necessity of including interspecies interactions in microbial process projections to reduce uncertainty.
基金supported by grants from the National Key Research and Development Program of China(Grant No.2022YFD1400200)the Special Support Plan for High-Level Talent of Shaanxi Province。
文摘Ambient temperature affects the occurrence and prevalence of plant disease.Most bacterial diseases are damaging at high temperatures.However,kiwifruit bacterial canker caused by Pseudomonas syringae pv.actinidiae(Psa)has been found to be prevalent at relatively cool temperatures,and it is unclear how ambient temperature affects the development of kiwifruit bacterial canker.In this study,basal resistance to Psa was suppressed in kiwifruit at cool growth temperature(16℃)compared with at normal temperature(24℃).In addition,RNA sequence analysis and ethylene content assessment indicated that ethylene modulated kiwifruit resistance to Psa at normal growth temperature and that cool temperature inhibited ethylene accumulation and Psa-induced activation of the ethylene signaling pathway in kiwifruit.Virusmediated silencing of the kiwifruit ethylene signaling gene AcEIN2 suppressed kiwifruit resistance to Psa at normal growth temperature.Exogenous application of ethylene inhibitor 1-methylcyclopropene eliminated the difference in kiwifruit resistance to Psa at 16 and 24℃.Exogenous application of ethylene analogues ethephon induced resistance to Psa in kiwifruit.In conclusion,cool temperatures impair basal resistance to Psa by reducing the activation of ethylene biosynthesis and signaling in kiwifruit.The results provide clues for new strategies to control plant diseases in a context of global environmental change.
基金supported by the National Natural Science Foundation of China(32161143006,32171997)the Earmarked Fund for CARS-13,and the Agricultural Science and Technology Innovation Program of Chinese Academy of Agricultural Sciences(No.CAAS-ASTIP-2021-OCRI).
文摘Bacterial wilt(BW)caused by Ralstonia solanacearum is a wide-spread and serious disease in peanut.To date,this soilborne disease could only be effectively controlled by planting resistant peanut cultivars.However,the relatively lower yield potential of the available BW-resistant peanut cultivars is a key reason restricting productivity in most epidemic regions naturally infested with the pathogen.Even small pods or seeds and low number per plant has been regarded as the key factor for the low yield potential both in BW-resistant peanut germplasm lines and available released cultivars,whether the resistance is closely linked with key yield components remains unclear.In this study,the relationship between pod weight and BW resistance was analyzed by using a recombinant inbred lines(RIL)population derived from a crossing combination between a high yielding cultivar Xuhua 13 and a BW-resistant cultivar Zhonghua 6.From the experiments,it was found that the BW resistance was not significantly correlated with pod number per plant(PNP),hundred pod weight(HPW)and pod weight per plant(PWP)in the RIL population.Based on linkage analysis,the quantitative trait locus(QTL)s related to PNP were identified on A06,A07,A08 and B03.The QTLs for HPW were detected on A05 and A07,and the QTLs for PWP were on A06,A07 and B03.However,the QTL for BW resistance identified on B02.These results indicated that the BW resistance and the pod number per plant as well as pod weight were inherited independently.Two recombined lines(QT0944 and QT1028)with high level BW resistance and large pods(hundred pod weight over 185g)were identified from the RILs,and they possessed the favored alleles of identified QTLs from both parents,which could be used in peanut breeding for high yield and high level disease resistance.
基金supported by the Special Fund for Agro-scientific Research in the Public Interest of Fujian Province,China(Grant No.2023R1021006)the National Natural Science Foundation of China(Grant No.32402387)+1 种基金the extended research project of the National Natural Science Foundation of China(Grant No.GJYS202511)the 5511 Collaborative Engineering Project,China(Grant No.XTCXGC2021001).
文摘Magnaporthe oryzae,the causal agent of rice blast,induces significant upregulation of OsPR10b,a pathogenesis-related(PR)pollen allergen(BetV-1)family gene.To investigate its role in immunity,we generated OsPR10b knockout mutants in the Zhonghua 11(ZH11)background.OsPR10b was predominantly expressed in rice calli and strongly induced by M.oryzae infection.Knockout mutants(ospr10b-1 and ospr10b-2)exhibited heightened susceptibility to both M.oryzae and Xanthomonas oryzae pv.oryzae(Xoo),demonstrating that OsPR10b positively regulates resistance to blast and bacterial blight.Our findings elucidate OsPR10b’s role in rice immunity and provide genetic resources for disease-resistant breeding.
基金The Innovative Talent Foundation of Hainan Province under contract No.KJRC2023C39the National Natural Science Foundation of China under contract Nos 42161144006 and 42076108.
文摘Coral gardening has become a promising technique for restoring reefs worldwide in the Anthropocene era.The microbiome plays an important role in enhancing adaptive resilience in situ nursery propagation of corals.However,little is known about the response patterns of bacterial community dynamics,co-occurrence networks and assembly processes of different species in coral restoration nurseries over time.Here,we collected two Acropora coral samples from transplanted fragments and source colonies at 1-month and 3-month post-transplantation(May and July 2022)in an upwelling-affected fragmented reef.Full-length 16S rRNA gene sequencing revealed that bacterial communities of coral fragments in nurseries exhibited consistent temporal shifts compared to those of the source colonies.High host specificity was observed in the bacterial community and network structure associated with source colonies.In contrast,for the two coral species within nurseries,there were no differences in bacterial diversity,composition and core microbiome.Stochastic assembly processes were identified as the primary drivers of bacterial communities in all May samples,whereas deterministic processes played a more prominent role in July.Seawater properties(e.g.,temperature and ammonium concentration)partially explained the compositional changes in the bacterial communities of these coral samples.Our findings suggested that coral nurseries contributed to the homogenization of bacterial communities in different Acropora corals,despite the apparent temporal dynamics of bacteria.These results enhance our understanding of the coral microbiome,ecological interactions and assembly principles in different host within in situ nurseries.
基金supported by the National Natural Science Foundation of China(No.42577377).
文摘The application of modified biochar has been proven to be a novel and promising strategy to improve saline-alkali soil.However,the effect of iron-modified biochar(FB)on the chemical properties of saline-alkali soil at different depths remains unclear.Therefore,we designed a soil column and divided it into three consecutive parts(i.e.,topsoil,middle soil,and subsoil)to explore the amelioration effects of biochar on saline-alkali soil chemical properties and bacterial communities along a depth gradient in the treatments amended with 0.5%(weight/weight)pristine biochar(PB),1%(weight:weight)PB,0.5%(weight:weight)FB,and 1%(weight:weight)FB and without biochar(control,CK).The results showed that soil chemical properties were significantly improved with 1%FB application,while the amelioration effect of FB was different between the topsoil and subsoil.The activities of extracellular enzymes significantly increased in the topsoil and base cations decreased in the subsoil in the FB treatment compared with CK.Moreover,the abundances of halophilic taxa were higher in the subsoil than in the topsoil,especially for Bacteroidetes and Deinococcota.Furthermore,the abundances of beneficial bacteria(e.g.,c_Alphaproteobacteria,Sphingomonas,and Pontibacter)in saline-alkali soil increased in the FB treatment compared with CK.Our results suggest the ameliorative effect of FB on soil properties and bacterial communities along a soil depth gradient,providing a novel strategy for improving saline-alkali soil with biochar.
