库态按蚊是1个由5种亲缘种型组成的按蚊复合体,这些种型分别被命名为A、B、C、D 和 E 型。在使用PCR 检测还没有条件的地区,鉴定库态按蚊亲缘种型的一个重要方法是作染色体组型分析。使用库态按蚊幼虫作染色体涂片,对云南地区的库态按...库态按蚊是1个由5种亲缘种型组成的按蚊复合体,这些种型分别被命名为A、B、C、D 和 E 型。在使用PCR 检测还没有条件的地区,鉴定库态按蚊亲缘种型的一个重要方法是作染色体组型分析。使用库态按蚊幼虫作染色体涂片,对云南地区的库态按蚊种型作了初步研究,并首次报道了该地区存在的亲缘种型成员,认为在云南省库态按蚊 A型和 B 型在同一个地区并存。同时,还展示了库态按蚊复合体的染色体组型、核型模式图及种型在中国毗邻国家的分布地图。展开更多
Copy number variants (CNVs) are pieces of genomic DNA of 1000 base pairs or longer which occur in a given genome at a different frequency than in a reference genome. Their importance as a source for phenotypic variabi...Copy number variants (CNVs) are pieces of genomic DNA of 1000 base pairs or longer which occur in a given genome at a different frequency than in a reference genome. Their importance as a source for phenotypic variability has been recognized only in the last couple of years. Chromosomal deletions can be seen as a special case of CNVs where stretches of DNA are missing in certain lines when compared to the reference genome of the mouse line C57BL/6, for example. Based upon more than 8 million single nucleotide polymorphisms (SNPs) in the fifteen inbred mouse lines which were determined in a whole genome chip based resequencing project by Perlegen Sciences, we detected 20166 such long chromosomal deletions. They cover altogether between 4.4 million and 8.8 million base pairs, depending on the mouse line. Thus, their extent is comparable to that of SNPs. The chromosomal deletions were found by searching for clusters of missing values in the genotyping data by applying bioinformatics and biostatistical methods. In contrast to isolated missing values, clusters are likely the consequence of missing DNA probe rather than of a failed hybridization or deficient oligos. We analyzed these deletion sites in various ways. Twenty-two percent of these deletion sites overlap with exons; they could therefore affect a gene's functioning. The corresponding genes seem to exist in alternative forms, a phenomenon that reminds of the alternative forms of mRNA generated during gene splicing. We furthermore detected statistically significant association between hundreds of deletion sites and fat weight at the age of eight weeks.展开更多
文摘库态按蚊是1个由5种亲缘种型组成的按蚊复合体,这些种型分别被命名为A、B、C、D 和 E 型。在使用PCR 检测还没有条件的地区,鉴定库态按蚊亲缘种型的一个重要方法是作染色体组型分析。使用库态按蚊幼虫作染色体涂片,对云南地区的库态按蚊种型作了初步研究,并首次报道了该地区存在的亲缘种型成员,认为在云南省库态按蚊 A型和 B 型在同一个地区并存。同时,还展示了库态按蚊复合体的染色体组型、核型模式图及种型在中国毗邻国家的分布地图。
基金Project supported by the German Ministry of Education and Research (BMBF) through the National Genome Research Network(NGFN) (Nos. 01GS0486 and 01GR0460)the DeutscheForschungsgemeinschaft (DFG) for a Travel Grant to Armin O.Schmitt
文摘Copy number variants (CNVs) are pieces of genomic DNA of 1000 base pairs or longer which occur in a given genome at a different frequency than in a reference genome. Their importance as a source for phenotypic variability has been recognized only in the last couple of years. Chromosomal deletions can be seen as a special case of CNVs where stretches of DNA are missing in certain lines when compared to the reference genome of the mouse line C57BL/6, for example. Based upon more than 8 million single nucleotide polymorphisms (SNPs) in the fifteen inbred mouse lines which were determined in a whole genome chip based resequencing project by Perlegen Sciences, we detected 20166 such long chromosomal deletions. They cover altogether between 4.4 million and 8.8 million base pairs, depending on the mouse line. Thus, their extent is comparable to that of SNPs. The chromosomal deletions were found by searching for clusters of missing values in the genotyping data by applying bioinformatics and biostatistical methods. In contrast to isolated missing values, clusters are likely the consequence of missing DNA probe rather than of a failed hybridization or deficient oligos. We analyzed these deletion sites in various ways. Twenty-two percent of these deletion sites overlap with exons; they could therefore affect a gene's functioning. The corresponding genes seem to exist in alternative forms, a phenomenon that reminds of the alternative forms of mRNA generated during gene splicing. We furthermore detected statistically significant association between hundreds of deletion sites and fat weight at the age of eight weeks.
