To dynamically update the shape of orebody according to the knowledge of a structural geologist’s insight,an approach of orebody implicit modeling from raw drillhole data using the generalized radial basis function i...To dynamically update the shape of orebody according to the knowledge of a structural geologist’s insight,an approach of orebody implicit modeling from raw drillhole data using the generalized radial basis function interpolant was presented.A variety of constraint rules,including geology trend line,geology constraint line,geology trend surface,geology constraint surface and anisotropy,which can be converted into interpolation constraints,were developed to dynamically control the geology trends.Combined with the interactive tools of constraint rules,this method can avoid the shortcomings of the explicit modeling method based on the contour stitching,such as poor model quality,and is difficult to update dynamically,and simplify the modeling process of orebody.The results of numerical experiments show that the 3D ore body model can be reconstructed quickly,accurately and dynamically by the implicit modeling method.展开更多
To enhance the stability of helicopter maneuvers during task execution,a composite trajectory tracking controller design based on the implicit model(IM)and linear active disturbance rejection control(LADRC)is proposed...To enhance the stability of helicopter maneuvers during task execution,a composite trajectory tracking controller design based on the implicit model(IM)and linear active disturbance rejection control(LADRC)is proposed.Initially,aerodynamic models of the main and tail rotor are created using the blade element theory and the uniform inflow assumption.Subsequently,a comprehensive flight dynamic model of the helicopter is established through fitting aerodynamic force fitting.Subsequently,for precise helicopter maneuvering,including the spiral,spiral up,and Ranversman maneuver,a regular trim is undertaken,followed by minor perturbation linearization at the trim point.Utilizing the linearized model,controllers are created for the IM attitude inner loop and LADRC position outer loop of the helicopter.Ultimately,a comparison is made between the maneuver trajectory tracking results of the IM‑LADRC and the conventional proportional-integral-derivative(PID)control method is performed.Experimental results demonstrate that utilizing the post-trim minor perturbation linearized model in combination with the IM‑LADRC method can achieve higher precision in tracking results,thus enhancing the accuracy of helicopter maneuver execution.展开更多
Surface-based geometric modeling has many advantages in terms of visualization and traditional subtractive manufacturing using computer-numerical-control cutting-machine tools.However,it is not an ideal solution for a...Surface-based geometric modeling has many advantages in terms of visualization and traditional subtractive manufacturing using computer-numerical-control cutting-machine tools.However,it is not an ideal solution for additive manufacturing because to digitally print a surface-represented geometric object using a certain additive manufacturing technology,the object has to be converted into a solid representation.However,converting a known surface-based geometric representation into a printable representation is essentially a redesign process,and this is especially the case,when its interior material structure needs to be considered.To specify a 3D geometric object that is ready to be digitally manufactured,its representation has to be in a certain volumetric form.In this research,we show how some of the difficulties experienced in additive manufacturing can be easily solved by using implicitly represented geometric objects.Like surface-based geometric representation is subtractive manufacturing-friendly,implicitly described geometric objects are additive manufacturing-friendly:implicit shapes are 3D printing ready.The implicit geometric representation allows to combine a geometric shape,material colors,an interior material structure,and other required attributes in one single description as a set of implicit functions,and no conversion is needed.In addition,as implicit objects are typically specified procedurally,very little data is used in their specifications,which makes them particularly useful for design and visualization with modern cloud-based mobile devices,which usually do not have very big storage spaces.Finally,implicit modeling is a design procedure that is parallel computing-friendly,as the design of a complex geometric object can be divided into a set of simple shape-designing tasks,owing to the availability of shape-preserving implicit blending operations.展开更多
We report the results of protein folding （219M, C34, N36, 2KES, 2KHK） by the method of accelerated molecular dynamics （aMD） at room temperature with the implicit solvent model. Starting from the linear structures,...We report the results of protein folding （219M, C34, N36, 2KES, 2KHK） by the method of accelerated molecular dynamics （aMD） at room temperature with the implicit solvent model. Starting from the linear structures, these proteins successfully fold to the native structure in a lO0-ns aMD simulation. In contrast, they are failed under the traditional MD simulation in the same simulation time. Then we find that the lowest root mean square deviations of helix structures from the native structures are 0.36 A, 0.63 A, 0.52 A, 1.1 A and 0.78 A. What is more, native contacts, cluster and free energy analyses show that the results of the aMD method are in accordance with the experiment very well. All analyses show that the aMD can accelerate the simulation process, thus we may apply it to the field of computer aided drug designs.展开更多
We herein review our studies on simulating the thermal unfolding Fourier transform infrared and two-dimensional infrared spectra of peptides. The peptide-water configuration ensembles, required forspectrum modeling, a...We herein review our studies on simulating the thermal unfolding Fourier transform infrared and two-dimensional infrared spectra of peptides. The peptide-water configuration ensembles, required forspectrum modeling, aregenerated at a series of temperatures using the GBOBC implicit solvent model and the integrated tempering sampling technique. The fluctuating vibrational Hamiltonians of the amide I vibrational band are constructed using the Frenkel exciton model. The signals are calculated using nonlinear exciton propagation. The simulated spectral features such as the intensity and ellipticity are consistent with the experimental observations. Comparing the signals for two beta-hairpin polypeptides with similar structures suggests that this technique is sensitive to peptide foldinz landscapes.展开更多
A new three-dimensional semi-implicit finite-volume ocean model has been developed for simulating the coastal ocean circulation, which is based on the staggered C-unstructured non-orthogonal grid in the hor- izontal d...A new three-dimensional semi-implicit finite-volume ocean model has been developed for simulating the coastal ocean circulation, which is based on the staggered C-unstructured non-orthogonal grid in the hor- izontal direction and z-level grid in the vertical direction. The three-dimensional model is discretized by the semi-implicit finite-volume method, in that the free-surface and the vertical diffusion are semi-implicit, thereby removing stability limitations associated with the surface gravity wave and vertical diffusion terms. The remaining terms in the momentum equations are discretized explicitly by an integral method. The partial cell method is used for resolving topography, which enables the model to better represent irregular topography. The model has been tested against analytical cases for wind and tidal oscillation circulation, and is applied to simulating the tidal flow in the Bohal Sea. The results are in good agreement both with the analytical solutions and measurement results.展开更多
Fast high-precision patient-specific vascular tissue and geometric structure reconstruction is an essential task for vascular tissue engineering and computer-aided minimally invasive vascular disease diagnosis and sur...Fast high-precision patient-specific vascular tissue and geometric structure reconstruction is an essential task for vascular tissue engineering and computer-aided minimally invasive vascular disease diagnosis and surgery.In this paper,we present an effective vascular geometry reconstruction technique by representing a highly complicated geometric structure of a vascular system as an implicit function.By implicit geometric modelling,we are able to reduce the complexity and level of difficulty of this geometric reconstruction task and turn it into a parallel process of reconstructing a set of simple short tubular-like vascular sections,thanks to the easy-blending nature of implicit geometries on combining implicitly modelled geometric forms.The basic idea behind our technique is to consider this extremely difficult task as a process of team exploration of an unknown environment like a cave.Based on this idea,we developed a parallel vascular modelling technique,called Skeleton Marching,for fast vascular geometric reconstruction.With the proposed technique,we first extract the vascular skeleton system from a given volumetric medical image.A set of sub-regions of a volumetric image containing a vascular segment is then identified by marching along the extracted skeleton tree.A localised segmentation method is then applied to each of these sub-image blocks to extract a point cloud from the surface of the short simple blood vessel segment contained in the image block.These small point clouds are then fitted with a set of implicit surfaces in a parallel manner.A high-precision geometric vascular tree is then reconstructed by blending together these simple tubular-shaped implicit surfaces using the shape-preserving blending operations.Experimental results show the time required for reconstructing a vascular system can be greatly reduced by the proposed parallel technique.展开更多
Accurate three-dimensional （3D） target positioning is of great importance in many industrial applications. Although various methods for reconstructing 3D information from a set of images have been available in the l...Accurate three-dimensional （3D） target positioning is of great importance in many industrial applications. Although various methods for reconstructing 3D information from a set of images have been available in the literature, few of them pay enough attention to the indispensable procedures, such as target extraction from images and image correction having strong influences upon the 3D positioning accuracy. This article puts forward a high-precision ellipse center （target point） extraction method and a new image correction approach which has been integrated into the 3D reconstruction pipeline with a concise implicit model to accurately compensates for the image distortion. The methods are applied to a copyright-reserved close range photogrammetric system. Real measuring experiments and industrial applications have evidenced the proposed methods, which can significantly improve the 3D positioning accuracy.展开更多
In this work, an enhanced treatment of the solid boundaries is proposed for smoothed particle hydrodynamics with implicit time integration scheme （Implicit SPH）. Three types of virtual particles, i.e., boundary part...In this work, an enhanced treatment of the solid boundaries is proposed for smoothed particle hydrodynamics with implicit time integration scheme （Implicit SPH）. Three types of virtual particles, i.e., boundary particles, image particles and mirror particles, are used to impose boundary conditions. Boundary particles are fixed on the solid boundary, and each boundary particle is associated with two fixed image particles inside the fluid domain and two fixed mirror particles outside the fluid domain. The image particles take the flow properties through fluid particles with moving least squares （MLS） interpolation and the properties of mirror particles can be obtained by the corresponding image particles. A repulsive force is also applied for boundary particles to prevent fluid particles from unphysical penetra- tion through solid boundaries. The new boundary treatment method has been validated with five numerical examples. All the numerical results show that Implicit SPH with this new boundary-treatment method can obtain accurate results for non-Newtonian fluids as well as Newtonian fluids, and this method is suitable for complex solid boundaries and can be easily extended to 3D problems.展开更多
In this numerical model for simulating the Kuroshio intrusion into the East and South China Seas,vertically averaged marine hydrodynamic equations governing ocean currents and long-period waves areapproximated by a se...In this numerical model for simulating the Kuroshio intrusion into the East and South China Seas,vertically averaged marine hydrodynamic equations governing ocean currents and long-period waves areapproximated by a set of two-time-level semi-implicit finite difference equations. The major terms in-cluding the local acceleration, sea-surface slope, Coriolis force and the bottom friction are approxi-mated with the Crank-Nicholson scheme, which is of second order accuracy. The advection terms are app-roximated with the Leith scheme. The difference equations are split into two sets of alternating directionimplicit quations, each of which has a tridiagonal matrix and can be easily solved. The model reproduces a major Kuroshio intrusion north of Luzon Island, one north of Taiwan Island, andone west of the Tokara Strait. The model shows a current system running from the Luzon Strait to the coastof Vietnam and Hainan Island, through the Taiwan Strait and then into the Tsushima Strait. The summerand winter展开更多
A layered three-dimensional noalinear numerical model was constructed to simulate the generation and propagation of interanal tides over the continental slope. The simulation was split into external mode computation (...A layered three-dimensional noalinear numerical model was constructed to simulate the generation and propagation of interanal tides over the continental slope. The simulation was split into external mode computation (EMC) and internal mode computation (IMC) to minimize the computational load.IMC was carried out once afte EMC was implemented N time. As to EMC, a semi-implicit numerical scheme was applied in such a way that the pressure gradient terms and the velocity divergence terms were discretized semi-implicitly, but the other terms were discretized explicitly. Eulerian-Lagrangian explicit discretization are applied to the convective terms simultaneously. As a result, the stability of EMC did not depend on the wave celerity and time step was not limited by the CFL condition. More than that, use of the conjugate gradient accelerated Jacobi method further improved the computational efficiency of the model.展开更多
文摘To dynamically update the shape of orebody according to the knowledge of a structural geologist’s insight,an approach of orebody implicit modeling from raw drillhole data using the generalized radial basis function interpolant was presented.A variety of constraint rules,including geology trend line,geology constraint line,geology trend surface,geology constraint surface and anisotropy,which can be converted into interpolation constraints,were developed to dynamically control the geology trends.Combined with the interactive tools of constraint rules,this method can avoid the shortcomings of the explicit modeling method based on the contour stitching,such as poor model quality,and is difficult to update dynamically,and simplify the modeling process of orebody.The results of numerical experiments show that the 3D ore body model can be reconstructed quickly,accurately and dynamically by the implicit modeling method.
基金supported in part by the National Natural Science Foundation of China(No.12032012)the Key Discipline Construction Project of Colleges and Universities in Jiangsu Province.
文摘To enhance the stability of helicopter maneuvers during task execution,a composite trajectory tracking controller design based on the implicit model(IM)and linear active disturbance rejection control(LADRC)is proposed.Initially,aerodynamic models of the main and tail rotor are created using the blade element theory and the uniform inflow assumption.Subsequently,a comprehensive flight dynamic model of the helicopter is established through fitting aerodynamic force fitting.Subsequently,for precise helicopter maneuvering,including the spiral,spiral up,and Ranversman maneuver,a regular trim is undertaken,followed by minor perturbation linearization at the trim point.Utilizing the linearized model,controllers are created for the IM attitude inner loop and LADRC position outer loop of the helicopter.Ultimately,a comparison is made between the maneuver trajectory tracking results of the IM‑LADRC and the conventional proportional-integral-derivative(PID)control method is performed.Experimental results demonstrate that utilizing the post-trim minor perturbation linearized model in combination with the IM‑LADRC method can achieve higher precision in tracking results,thus enhancing the accuracy of helicopter maneuver execution.
基金supported by the National Natural Science Foundation of China(Grant No.61502402 and 61379080)the Natural Science Foundation of Fujian Province of China(Grant No.2015J05129).
文摘Surface-based geometric modeling has many advantages in terms of visualization and traditional subtractive manufacturing using computer-numerical-control cutting-machine tools.However,it is not an ideal solution for additive manufacturing because to digitally print a surface-represented geometric object using a certain additive manufacturing technology,the object has to be converted into a solid representation.However,converting a known surface-based geometric representation into a printable representation is essentially a redesign process,and this is especially the case,when its interior material structure needs to be considered.To specify a 3D geometric object that is ready to be digitally manufactured,its representation has to be in a certain volumetric form.In this research,we show how some of the difficulties experienced in additive manufacturing can be easily solved by using implicitly represented geometric objects.Like surface-based geometric representation is subtractive manufacturing-friendly,implicitly described geometric objects are additive manufacturing-friendly:implicit shapes are 3D printing ready.The implicit geometric representation allows to combine a geometric shape,material colors,an interior material structure,and other required attributes in one single description as a set of implicit functions,and no conversion is needed.In addition,as implicit objects are typically specified procedurally,very little data is used in their specifications,which makes them particularly useful for design and visualization with modern cloud-based mobile devices,which usually do not have very big storage spaces.Finally,implicit modeling is a design procedure that is parallel computing-friendly,as the design of a complex geometric object can be divided into a set of simple shape-designing tasks,owing to the availability of shape-preserving implicit blending operations.
基金Supported by the National Natural Science Foundation of China under Grant Nos 31200545,11274206 and 11574184
文摘We report the results of protein folding （219M, C34, N36, 2KES, 2KHK） by the method of accelerated molecular dynamics （aMD） at room temperature with the implicit solvent model. Starting from the linear structures, these proteins successfully fold to the native structure in a lO0-ns aMD simulation. In contrast, they are failed under the traditional MD simulation in the same simulation time. Then we find that the lowest root mean square deviations of helix structures from the native structures are 0.36 A, 0.63 A, 0.52 A, 1.1 A and 0.78 A. What is more, native contacts, cluster and free energy analyses show that the results of the aMD method are in accordance with the experiment very well. All analyses show that the aMD can accelerate the simulation process, thus we may apply it to the field of computer aided drug designs.
基金supported by the National Natural Science Foundation of China(Grant No.21203178)the National Natural Science Foundation of China(Grant No.21373201)+2 种基金the National Natural Science Foundation of China(Grant No.21433014)the Science and Technological Ministry of China(Grant No.2011YQ09000505)“Strategic Priority Research Program”of the Chinese Academy of Sciences(Grant Nos.XDB10040304 and XDB100202002)
文摘We herein review our studies on simulating the thermal unfolding Fourier transform infrared and two-dimensional infrared spectra of peptides. The peptide-water configuration ensembles, required forspectrum modeling, aregenerated at a series of temperatures using the GBOBC implicit solvent model and the integrated tempering sampling technique. The fluctuating vibrational Hamiltonians of the amide I vibrational band are constructed using the Frenkel exciton model. The signals are calculated using nonlinear exciton propagation. The simulated spectral features such as the intensity and ellipticity are consistent with the experimental observations. Comparing the signals for two beta-hairpin polypeptides with similar structures suggests that this technique is sensitive to peptide foldinz landscapes.
基金The Major State Basic Research Program of China under contract No. 2012CB417002the National Natural Science Foundation of China under contract Nos 50909065 and 51109039
文摘A new three-dimensional semi-implicit finite-volume ocean model has been developed for simulating the coastal ocean circulation, which is based on the staggered C-unstructured non-orthogonal grid in the hor- izontal direction and z-level grid in the vertical direction. The three-dimensional model is discretized by the semi-implicit finite-volume method, in that the free-surface and the vertical diffusion are semi-implicit, thereby removing stability limitations associated with the surface gravity wave and vertical diffusion terms. The remaining terms in the momentum equations are discretized explicitly by an integral method. The partial cell method is used for resolving topography, which enables the model to better represent irregular topography. The model has been tested against analytical cases for wind and tidal oscillation circulation, and is applied to simulating the tidal flow in the Bohal Sea. The results are in good agreement both with the analytical solutions and measurement results.
基金partly supported by National Natural Science Foundation of China (No. 61502402)the Fundamental Research Funds for the Central Universities (No. 20720180073)
文摘Fast high-precision patient-specific vascular tissue and geometric structure reconstruction is an essential task for vascular tissue engineering and computer-aided minimally invasive vascular disease diagnosis and surgery.In this paper,we present an effective vascular geometry reconstruction technique by representing a highly complicated geometric structure of a vascular system as an implicit function.By implicit geometric modelling,we are able to reduce the complexity and level of difficulty of this geometric reconstruction task and turn it into a parallel process of reconstructing a set of simple short tubular-like vascular sections,thanks to the easy-blending nature of implicit geometries on combining implicitly modelled geometric forms.The basic idea behind our technique is to consider this extremely difficult task as a process of team exploration of an unknown environment like a cave.Based on this idea,we developed a parallel vascular modelling technique,called Skeleton Marching,for fast vascular geometric reconstruction.With the proposed technique,we first extract the vascular skeleton system from a given volumetric medical image.A set of sub-regions of a volumetric image containing a vascular segment is then identified by marching along the extracted skeleton tree.A localised segmentation method is then applied to each of these sub-image blocks to extract a point cloud from the surface of the short simple blood vessel segment contained in the image block.These small point clouds are then fitted with a set of implicit surfaces in a parallel manner.A high-precision geometric vascular tree is then reconstructed by blending together these simple tubular-shaped implicit surfaces using the shape-preserving blending operations.Experimental results show the time required for reconstructing a vascular system can be greatly reduced by the proposed parallel technique.
基金National Natural Science Foundation of China （50875 130） Doctoral Discipline Foundation of China （200802870016） Science Foundation of Jiangsu, China （BE2008136）
文摘Accurate three-dimensional （3D） target positioning is of great importance in many industrial applications. Although various methods for reconstructing 3D information from a set of images have been available in the literature, few of them pay enough attention to the indispensable procedures, such as target extraction from images and image correction having strong influences upon the 3D positioning accuracy. This article puts forward a high-precision ellipse center （target point） extraction method and a new image correction approach which has been integrated into the 3D reconstruction pipeline with a concise implicit model to accurately compensates for the image distortion. The methods are applied to a copyright-reserved close range photogrammetric system. Real measuring experiments and industrial applications have evidenced the proposed methods, which can significantly improve the 3D positioning accuracy.
基金supported by the National Natural Science Foundation of China(51276192)
文摘In this work, an enhanced treatment of the solid boundaries is proposed for smoothed particle hydrodynamics with implicit time integration scheme （Implicit SPH）. Three types of virtual particles, i.e., boundary particles, image particles and mirror particles, are used to impose boundary conditions. Boundary particles are fixed on the solid boundary, and each boundary particle is associated with two fixed image particles inside the fluid domain and two fixed mirror particles outside the fluid domain. The image particles take the flow properties through fluid particles with moving least squares （MLS） interpolation and the properties of mirror particles can be obtained by the corresponding image particles. A repulsive force is also applied for boundary particles to prevent fluid particles from unphysical penetra- tion through solid boundaries. The new boundary treatment method has been validated with five numerical examples. All the numerical results show that Implicit SPH with this new boundary-treatment method can obtain accurate results for non-Newtonian fluids as well as Newtonian fluids, and this method is suitable for complex solid boundaries and can be easily extended to 3D problems.
基金Project supported by the National Natural Science Foundation of China.
文摘In this numerical model for simulating the Kuroshio intrusion into the East and South China Seas,vertically averaged marine hydrodynamic equations governing ocean currents and long-period waves areapproximated by a set of two-time-level semi-implicit finite difference equations. The major terms in-cluding the local acceleration, sea-surface slope, Coriolis force and the bottom friction are approxi-mated with the Crank-Nicholson scheme, which is of second order accuracy. The advection terms are app-roximated with the Leith scheme. The difference equations are split into two sets of alternating directionimplicit quations, each of which has a tridiagonal matrix and can be easily solved. The model reproduces a major Kuroshio intrusion north of Luzon Island, one north of Taiwan Island, andone west of the Tokara Strait. The model shows a current system running from the Luzon Strait to the coastof Vietnam and Hainan Island, through the Taiwan Strait and then into the Tsushima Strait. The summerand winter
文摘A layered three-dimensional noalinear numerical model was constructed to simulate the generation and propagation of interanal tides over the continental slope. The simulation was split into external mode computation (EMC) and internal mode computation (IMC) to minimize the computational load.IMC was carried out once afte EMC was implemented N time. As to EMC, a semi-implicit numerical scheme was applied in such a way that the pressure gradient terms and the velocity divergence terms were discretized semi-implicitly, but the other terms were discretized explicitly. Eulerian-Lagrangian explicit discretization are applied to the convective terms simultaneously. As a result, the stability of EMC did not depend on the wave celerity and time step was not limited by the CFL condition. More than that, use of the conjugate gradient accelerated Jacobi method further improved the computational efficiency of the model.
