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Genetic Evolution Analysis of Rabies Virus in Jiangsu Province,China
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作者 Minghui Zhang Yuanfang Qin +8 位作者 Na zhang Yuqiao Liu Jun Yang Xiaonuo Xu Pengcheng Yu Shuqing Liu Qian Liu Xiaoyan Tao Wuyang Zhu 《Biomedical and Environmental Sciences》 2026年第2期245-250,共6页
Rabies is a zoonotic disease with an estimated global mortality of 59,000 people annually and a burden of more than 3.7 million disability-adjusted life years(DALYs)that is caused by a neurotropic lyssavirus[1].Dogs a... Rabies is a zoonotic disease with an estimated global mortality of 59,000 people annually and a burden of more than 3.7 million disability-adjusted life years(DALYs)that is caused by a neurotropic lyssavirus[1].Dogs are the primary source of human rabies,as more than 95%of human cases can be traced to dogs[2,3].China faces a substantial burden of rabies,having endured three major human rabies epidemics,which occurred in the 1950s,1981,and 2007[4].Implementation of various prevention and control measures has decreased the number of human rabies cases from 3,300 in 2007 to 167 in 2024.In China. 展开更多
关键词 rabies virus Jiangsu province neurotropic lyssavirus dogs neurotropic lyssavirus prevention control measures China genetic evolution zoonotic disease
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Structural Reliability Analysis Based on Differential Evolution Algorithm and Hypersphere Integration
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作者 CHEN Zhenzhong HAN Zhuo +4 位作者 WANG Peiyu PAN Qianghua LI Xiaoke GAN Xuehui CHEN Ge 《Journal of Donghua University(English Edition)》 2026年第1期118-130,共13页
In reliability analyses,the absence of a priori information on the most probable point of failure(MPP)may result in overlooking critical points,thereby leading to biased assessment outcomes.Moreover,second-order relia... In reliability analyses,the absence of a priori information on the most probable point of failure(MPP)may result in overlooking critical points,thereby leading to biased assessment outcomes.Moreover,second-order reliability methods exhibit limited accuracy in highly nonlinear scenarios.To overcome these challenges,a novel reliability analysis strategy based on a multimodal differential evolution algorithm and a hypersphere integration method is proposed.Initially,the penalty function method is employed to reformulate the MPP search problem as a conditionally constrained optimization task.Subsequently,a differential evolution algorithm incorporating a population delineation strategy is utilized to identify all MPPs.Finally,a paraboloid equation is constructed based on the curvature of the limit-state function at the MPPs,and the failure probability of the structure is calculated by using the hypersphere integration method.The localization effectiveness of the MPPs is compared through multiple numerical cases and two engineering examples,with accuracy comparisons of failure probabilities against the first-order reliability method(FORM)and the secondorder reliability method(SORM).The results indicate that the method effectively identifies existing MPPs and achieves higher solution precision. 展开更多
关键词 reliability analysis design point positioning differential evolution algorithm hypersphere integration
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Interdisciplinary integration and development trends of intelligent diagnosis in traditional Chinese medicine:a topic evolution analysis
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作者 Chenggong Xie Keying Huang +2 位作者 Zhengquan Du Xinyi Huang Bin Wang 《Digital Chinese Medicine》 2026年第1期43-56,共14页
Objective To systematically characterize the developmental trajectory and interdisciplinary integration of intelligent diagnosis in traditional Chinese medicine(TCM)through quantitative topic evolution analysis,we add... Objective To systematically characterize the developmental trajectory and interdisciplinary integration of intelligent diagnosis in traditional Chinese medicine(TCM)through quantitative topic evolution analysis,we addressed the fragmentation of existing research and clarified the long-term research structure and evolutionary patterns of the field.Methods A topic evolution analysis was performed on Chinese-language literature pertaining to intelligent diagnosis in TCM.Publications were retrieved from the China National Knowledge Infrastructure(CNKI),Wanfang Data,and China Science and Technology Journal Database(VIP),covering the period from database inception to July 3,2025.A hybrid segmentation approach,based on cumulative publication growth trends and inflection point detection,was applied to divide the research timeline into distinct stages.Subsequently,the latent Dirichlet allocation(LDA)model was used to extract research topics,followed by alignment and evolutionary analysis of topics across different stages.Results A total of 3919 publications published between 2003 and 2025 were included,and the research trajectory was divided into five stages based on data-driven breakpoint detection.The field exhibited a clear evolutionary shift from early rule-based systems and tonguepulse image and signal analysis(2006–2010),to machine-learning-based syndrome and prescription modeling(2011–2015),followed by deep-learning-driven pattern recognition and formula association(2016–2020).Since 2021,research has increasingly emphasized knowledge-graph construction,multimodal integration,and intelligent clinical decision-support systems,with recent studies(2024–2025)showing the emergence of large language models and agent-based diagnostic frameworks.Topic evolution analysis further revealed sustained cross-stage continuity in syndrome modeling and prescription association analysis,alongside the progressive consolidation of integrated intelligent diagnostic platforms.Conclusion By identifying key technological transitions and persistent core research themes,our findings offer a structured reference framework for the design of intelligent diagnostic systems,the construction of knowledge-driven clinical decision-support tools,and the alignment of AI models with TCM diagnostic logic.Importantly,the stage-based evolutionary insights derived from this analysis can inform future methodological choices,improve model interpretability and clinical applicability,and support the translation of intelligent TCM diagnosis from experimental research to real-world clinical practice. 展开更多
关键词 Traditional Chinese medicine diagnosis Artificial intelligence Interdisciplinary integration Research stage identification Topic evolution analysis Latent Dirichlet allocation model
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Mapping editorial identity and thematic evolution in the Journal of Psychology in Africa(2008-2024):A meta-editorial framework analysis
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作者 Joon-ho Kim 《Journal of Psychology in Africa》 2026年第1期117-130,共14页
This study presents a reflective bibliometric review of 1457 peer-reviewed articles published in the Journal of Psychology in Africa(2008-2024,17 years),using a Meta-Editorial Mapping Framework(MEMF)analysis.The MEMF ... This study presents a reflective bibliometric review of 1457 peer-reviewed articles published in the Journal of Psychology in Africa(2008-2024,17 years),using a Meta-Editorial Mapping Framework(MEMF)analysis.The MEMF integrates citation metrics,keyword novelty ratios,TF-IDF weighting,and cluster-based topic modeling to trace long-term thematic trends and editorial evolution.Findings reveal sustained attention to foundational domains such as mental health,education,and identity,alongside a gradual integration of emergent themes including digital well-being,organizational behavior,and post-pandemic adaptation.Articles with moderate topical novelty(40%-60% new keywords)achieved the highest citation and usage metrics,suggesting that integrative innovation enhances scholarly impact.Clustering analyses indicate that the journal’s content forms overlapping conceptual domains rather than isolated silos.These insights contribute to editorial strategy,authorial positioning,and the future design of regional academic platforms.Moreover,the findings provide evidence supporting the use of the MEMF as a replicable tool for meta-editorial analysis across disciplinary and geographic boundaries. 展开更多
关键词 meta-editorial mapping framework(MEMF) topic evolution keyword novelty bibliometric analysis editorial strategy scholarly engagement Journal of Psychology in Africa
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Prenatal ultrasonography and genetic analysis of fetal cleidocranial dysplasia:A case report
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作者 Feng Wang Pei-Feng Dai Wen-Juan Gao 《World Journal of Clinical Cases》 SCIE 2025年第10期28-34,共7页
BACKGROUND Cleidocranial dysplasia(CCD)is an infrequent clinical condition with an autosomal dominant inheritance pattern.It is characterized by abnormal clavicles,patent sutures and fontanelles,supernumerary teeth,an... BACKGROUND Cleidocranial dysplasia(CCD)is an infrequent clinical condition with an autosomal dominant inheritance pattern.It is characterized by abnormal clavicles,patent sutures and fontanelles,supernumerary teeth,and short stature.Approximately 60%-70%of patients with CCD have mutations in the RUNX family transcription factor 2 gene.However,prenatal diagnosis of CCD is difficult when the family history is unknown.CASE SUMMARY We report a rare case of fetal CCD with an unknown family history,confirmed by prenatal ultrasonography and genetic testing at a gestational age of 16 weeks.The genetic reports indicated that the fetus carried pathogenic mutations in the RUNX family transcription factor 2 gene(c.674G>A).After careful consideration,the pregnant woman and her family decided to continue the pregnancy.CONCLUSION Definitive prenatal diagnosis of CCD should include family history,ultrasound diagnosis,and genetic analysis,especially if family history is unknown. 展开更多
关键词 Cleidocranial dysplasia genetic analysis Ultrasonic diagnosis PRENATAL Case report
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Microscopic analysis of mechanical anisotropy and damage evolution of 3D printed rock-like samples under uniaxial compressive tests 被引量:1
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作者 Yulong Shao Jingwei Yang +3 位作者 Jineon Kim Jae-Joon Song Juhyuk Moon Jianyong Han 《Journal of Rock Mechanics and Geotechnical Engineering》 2025年第2期688-704,共17页
Three-dimensional printing(3DP)offers valuable insight into the characterization of natural rocks and the verification of theoretical models due to its high reproducibility and accurate replication of complex defects ... Three-dimensional printing(3DP)offers valuable insight into the characterization of natural rocks and the verification of theoretical models due to its high reproducibility and accurate replication of complex defects such as cracks and pores.In this study,3DP gypsum samples with different printing directions were subjected to a series of uniaxial compression tests with in situ micro-computed tomography(micro-CT)scanning to quantitatively investigate their mechanical anisotropic properties and damage evolution characteristics.Based on the two-dimensional(2D)CT images obtained at different scanning steps,a novel void ratio variable was derived using the mean value and variance of CT intensity.Additionally,a constitutive model was formulated incorporating the proposed damage variable,utilizing the void ratio variable.The crack evolution and crack morphology of 3DP gypsum samples were obtained and analyzed using the 3D models reconstructed from the CT images.The results indicate that 3DP gypsum samples exhibit mechanical anisotropic characteristics similar to those found in naturally sedimentary rocks.The mechanical anisotropy is attributed to the bedding planes formed between adjacent layers and pillar-like structures along the printing direction formed by CaSO_(4)·2H_(2)O crystals of needle-like morphology.The mean gray intensity of the voids has a positive linear relationship with the threshold value,while the CT variance and void ratio have concave and convex relationships,respectively.The constitutive model can effectively match the stress–strain curves obtained from uniaxial compression experiments.This study provides comprehensive explanations of the failure modes and anisotropic mechanisms of 3DP gypsum samples,which is important for characterizing and understanding the failure mechanism and microstructural evolution of 3DP rocks when modeling natural rock behavior. 展开更多
关键词 Quantitative analysis Three-dimensional printing(3DP) Gypsum samples In situ micro-computed tomography(micro-CT)scanning Mechanical anisotropy Bedding planes Damage evolution
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The Prevalence, Genetic Characterization, and Evolutionary Analysis of Porcine Pegivirus in Guangdong, China 被引量:1
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作者 Yongsheng Xie Xiaoru Wang +6 位作者 Junsen Feng Liuming Wei Gen Li Guangbin Si Yibo Chen He Yan Dongsheng He 《Virologica Sinica》 SCIE CAS CSCD 2021年第1期52-60,共9页
Porcine pegivirus(PPgV)is a member of the Pegivirus genus in the Flaviviridae family.PPg V is an emerging virus that has been discovered in swine herds in Germany,the United States,China,Poland,Italy,and the United Ki... Porcine pegivirus(PPgV)is a member of the Pegivirus genus in the Flaviviridae family.PPg V is an emerging virus that has been discovered in swine herds in Germany,the United States,China,Poland,Italy,and the United Kingdom,indicating a wide geographical distribution.In this retrospective study,339 pig serum samples were collected from 20 different commercial swine farms located in nine cities in Guangdong Province,China,from 2016 to 2018,to investigate the prevalence and genetic diversity of PPg V in this geographical region.PPg V was detected in 55%(11/20)of the farms using nested reverse transcription PCR,with 6.2%(21/339)of pigs testing positive for PPg V.The yearly PPg V-positive rate increased from 2.6%to 7.5%between 2016 and 2018.Sequencing of PPg V-positive samples identified two complete polyprotein genes and seven partial NS5 B genes from different farms.Comparative analysis of the polyprotein genes revealed that PPg V sequences obtained in this study showed 87.4%–97.2%similarity at the nucleotide level and 96.5%–99.4%similarity at the amino acid level with the reference sequences.Sequence alignment and phylogenetic analysis of the complete polyprotein gene and partial NS5 B and NS3 genes demonstrated a high genetic similarity with the samples from the USA.The finding of the wide distribution of PPg V in swine herds in Guangdong Province will contribute to the understanding of the epidemiological characteristics and genetic evolution of PPg V in China. 展开更多
关键词 Porcine pegivirus(PPgV) PREVALENCE genetic diversity Phylogenetic analysis Guangdong Province
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Epidemiology and Genetic Evolution of Influenza B Viruses Circulating in the Democratic Republic of Congo from 2015 to 2022: Implication of Vaccination
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作者 Edith Nkwembe Ngabana Youdhie Ituneme N’ka Flabo +5 位作者 Grace Mufwaya Makayi Leonie Manya Kitoto Saleh Muhemedi Kayumba Pélagie Babakazo Hugo Kavunga Membo Steve Ahuka Mundeke 《Open Journal of Respiratory Diseases》 2025年第1期1-18,共18页
Introduction: Influenza A (Flu A) and B (Flu B) viruses are responsible for severe acute respiratory infections (SARI) worldwide, with a morbidity of 5 million and mortality of 29,000 - 650,000 deaths per year. Influe... Introduction: Influenza A (Flu A) and B (Flu B) viruses are responsible for severe acute respiratory infections (SARI) worldwide, with a morbidity of 5 million and mortality of 29,000 - 650,000 deaths per year. Influenza B viruses are an important cause of respiratory infections in humans, but they tend to be underappreciated due to the predominance of Influenza A. No molecular study on Influenza B has been carried out in the DRC. This study was conducted to document the molecular evolution of the hemagglutinin (HA) gene in the circulating Influenza B strains over the eight consecutive epidemic seasons (from 2015 to 2022). Methods: Samples were collected from outpatient cases suspected of influenza-like illness (ILI) and in all hospitalized patients with SARI from January 2015 to December 2022. Molecular analysis was done to determine influenza type and subtype, and then segments encoding the HA gene of Influenza B viruses were performed. Results: Of 8497 samples collected and tested, 639 (7.5%) were positive for influenza viruses, including 389 (60.8%) for Influenza A viruses and 248 (38,8%) for Influenza B viruses. Of the positive Influenza B samples, 91 were sequenced, including 26 belonging to the B/Yamagata lineage and 65 to the B/Victoria lineage. The HA gene of Influenza B viruses circulating in the DRC showed deletions in the HA1 region. Molecular analysis of Influenza B viruses reflects the genetic diversity of Influenza B/Yam virus clades (Y2, Y3, Y3V1A) alternating with Influenza B/Victoria virus clades (V1A, V1A.3) depending on the year and influenza seasons. The phylogenetic analysis of these Influenza B strains shows compatibility with the corresponding vaccine strains that the WHO had validated for each influenza season. Conclusion: This study underscores the importance of continuous molecular surveillance of Influenza B viruses in the DRC to understand their epidemiology and evolutionary dynamics. Identifying mutations, such as HA deletions, is critical for assessing their impact on transmissibility vaccine efficacy and guiding effective vaccination and control strategies. 展开更多
关键词 EPIDEMIOLOGY genetic evolution Influenza B Viruses DRC
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Development of a single-nucleotide polymorphism panel genotyping system for genetic analysis of Chinese hamsters
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作者 Minghe Sun Yafang Guo +12 位作者 Zhengnan Ren Ang Song Jing Lu Changlong Li Jianyi Lv Meng Guo Xin Liu Xiaoyan Du Zhaoyang Chen Guohua Song Yan He Zhenwen Chen Xueyun Huo 《Animal Models and Experimental Medicine》 2025年第5期916-921,共6页
Chinese hamster with Chinese characteristics is used in experiments,and it is of great value in the field of medical biology research.However,at present,there is no high-efficiency method for evaluating the genetic qu... Chinese hamster with Chinese characteristics is used in experiments,and it is of great value in the field of medical biology research.However,at present,there is no high-efficiency method for evaluating the genetic quality of Chinese hamsters.Here,we developed a novel Chinese hamster genetic quality detection system using single-nucleotide polymorphism(SNP)markers.To find SNP loci,we conducted whole genome sequencing on 24 Chinese hamsters.Then,we employed an SNP locus screening criterion that we set up previously and initially screened 214 SNP loci with wide genome distribution and high polymorphism level.Subsequently,we developed the SNP detection system using a multitarget region capture technique based on second-generation sequencing,and a 55 SNP panel for genetic evaluation of Chinese hamster populations was developed.PopGen.32.analysis results showed that the average effective allele number,Shannon index,observed heterozygosity,expected heterozygosity,average heterozygosity,polymorphism information,and other genetic parameters of Chinese hamster population A were higher than those in population B.Using scientific screening and optimization,we successfully developed a novel Chinese hamster SNP genetic detection system that can efficiently and accurately analyze the genetic quality of the Chinese hamster population. 展开更多
关键词 Chinese hamster genetic analysis genetic detection single-nucleotide polymorphism
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Genetic engineering and adaptive evolution of Saccharomyces cerevisiae for robust xylose uptake and ethanol production
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作者 Omama Rehman Jingfang Chen +8 位作者 Quan Zhang Muzi Hu Cuihuan Sun Youduo Wu Huipeng Gao Muhammad Jawad Ayesha Shahid Chong Peng Chuang Xue 《Chinese Journal of Chemical Engineering》 2025年第12期124-132,共9页
Saccharomyces cerevisiae is not naturally capable of efficiently utilizing xylose as a carbon source.When cultured with lignocellulosic hydrolysates containing pretreatment-derived inhibitors,S.cerevisiae suffers from... Saccharomyces cerevisiae is not naturally capable of efficiently utilizing xylose as a carbon source.When cultured with lignocellulosic hydrolysates containing pretreatment-derived inhibitors,S.cerevisiae suffers from much lower sugar uptake,ethanol yield and fermentation efficiency.Thus,considering efficient xylose conversion into ethanol during non-detoxified hydrolysate culture,genetic engineering and adaptive evolution of S.cerevisiae might be a promising joint strategy for improving xylose uptake and ethanol production.In this study,an inhibitor-tolerant strain S.cerevisiae SPSC01-TAF94 was genetically engineered by overexpressing both xylose transport-and metabolism-related genes(N360F,Ru-xyl A,TAL1,TKL1,RKI1 and RPE1),yielding the xylose-utilizing strain TAF94-X,followed by three-stage adaptation in non-detoxified corn stover hydrolysate containing 5 g·L^(-1)acetic acid,0.32 g·L^(-1)furfural,0.17 g·L(-1)HMF and 0.19 g·L^(-1)vanillin as the major inhibitors as well as 20,40 and 60 g·L^(-1)xylose adjusted as the major carbon source,respectively.Finally,an active xylose-utilizing and ethanolproducing strain TAF94-X60 was obtained,which achieved 44.9 g·L^(-1)ethanol with yield of0.41 g·g^(-1),productivity of 0.62 g·L^(-1)·h^(-1)and xylose consumption rate of 0.42 g·L^(-1)·h^(-1)during hydrolysate culture,compared to those of 36.5 g·L^(-1),0.38 g·g^(-1),0.50 g·L^(-1)·h^(-1)and 0.20 g·L^(-1)·h^(-1)obtained with the control strain TAF94-X.The proposed joint strategy effectively utilizes hydrolyzed sugars while eliminating the need for conventional detoxification or water washing processes,thus enhancing the economic feasibility of large-scale lignocellulosic ethanol production. 展开更多
关键词 Saccharomyces cerevisiae ETHANOL genetic engineering Adaptive evolution Xylose uptake Lignocellulosic hydrolysate
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Topic Mining and Evolution Analysis of Domestic Smart Library Research Based on the BERTopic Model
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作者 Meile Li Yinuo Jiang 《Journal on Artificial Intelligence》 2025年第1期509-516,共8页
This paper conducts topic mining and analysis of research literature in the domestic smart library field based on the BERTopic model,aiming to reveal its topic development context and evolution trends.Journal literatu... This paper conducts topic mining and analysis of research literature in the domestic smart library field based on the BERTopic model,aiming to reveal its topic development context and evolution trends.Journal literature in the smart library field collected by CNKI(China National Knowledge Infrastructure)from 2015 to 2024 was analyzed using the BERTopic model and dynamic topic modeling for topic mining and evolution trend analysis.The study found that the domestic smart library field involves multiple core topics,identifying a diversified topic structure centered around“data”,“user”,“5g”,etc.The research results provide data support and practical reference for libraries to accurately identify key points of technology integration during smart transformation and to optimize smart service models. 展开更多
关键词 Domestic smart library BERTopic topic mining evolution analysis
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A novel Bocaparvovirus in goats:Genetic features,phylogenetic analysis,and epidemiological implications
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作者 Kegu Ji’e Falong Yang +6 位作者 Ai Ran Yang Su Taichun Gao Lanmuyi Gou Shenglin Li Zihan Xia Keha-mo Abi 《Journal of Integrative Agriculture》 2025年第8期3291-3296,共6页
Bocapavovirus,a member of the genus Bocaparvovirus within the subfamily Parvovirinae and the family Parvoviridae,is a small,non-enveloped,single-stranded DNA virus.This pathogen poses health risks to both humans and a... Bocapavovirus,a member of the genus Bocaparvovirus within the subfamily Parvovirinae and the family Parvoviridae,is a small,non-enveloped,single-stranded DNA virus.This pathogen poses health risks to both humans and animals.The Bocaparvovirus genome. 展开更多
关键词 SMALL PARVOVIRIDAE phylogenetic analysis epidemiological implications non enveloped novel bocaparvovirus parvovirinae genetic features
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Chloroplast Genome Sequence Characterization and Phylogenetic Analysis of Pyrola Atropurpurea Franch
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作者 Wentao Sheng 《Phyton-International Journal of Experimental Botany》 2025年第2期331-345,共15页
Pyrola atropurpurea Franch is an important annual herbaceous plant.Few genomic analyses have been conducted on this plant,and chloroplast genome research will enrich its genomics basis.This study is based on high-thro... Pyrola atropurpurea Franch is an important annual herbaceous plant.Few genomic analyses have been conducted on this plant,and chloroplast genome research will enrich its genomics basis.This study is based on high-throughput sequencing technology and Bioinformatics methods to obtain the sequence,structure,and other characteristics of the P.atropurpurea chloroplast genome.The result showed that the chloroplast genome of P.atropurpurea has a double-stranded circular structure with a total length of 172,535 bp and a typical four-segment structure.The genome has annotated a total of 132 functional genes,including 43 tRNAs,8 rRNAs,76 protein-coding genes,and 5 pseudo-genes.In total,358 SSR loci were checked out,mainly composed of mononucleotide and trinucleotide repeat.There are three types of scattered repetitive sequences,totaling 4223,including 2452 forward repeats,1763 palindrome repeats,and eight reverse repeats.The optimal codon usage frequency is relatively high with AT usage preference in this genome.Chloroplast genome comparative analysis in the family Ericaceae shows that the overall sequence is more complex,and there are more variations in the gene interval region.The collinearity analysis indicated that there is a complex rearrangement of species between different genera in Ericaceae.The selection pressure analysis showed that the protein-encoding genes rpl33 and rps16 were positively selected among the seven medicinal plants in Ericaceae.The maximum likelihood tree shows that the genetic relationship among P.atropurpurea,Pyrola rotundifolia,and Chimaphila japonica is relatively close.Therefore,an important data basis was provided for species identification,genetic diversity,and phylogenetic studies of P.atropurpurea and even this genus of plants. 展开更多
关键词 Pyrola atropurpurea chloroplast genome scattered repeat sequence collinearity analysis genetic relationship
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Genetic Evolution Analysis of Actinobacillus pleuropneumoniae
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作者 Yu LIANG Yanfei LIU Jiande YANG 《Agricultural Biotechnology》 CAS 2019年第2期113-115,118,共4页
In order to explore the genetic evolution of Actinobacillus pleuropneumoniae(App) in different countries and clarify the relationships among different App in each region, the 16 S rRNA gene of App in the NCBI nucleoti... In order to explore the genetic evolution of Actinobacillus pleuropneumoniae(App) in different countries and clarify the relationships among different App in each region, the 16 S rRNA gene of App in the NCBI nucleotide database was analyzed and compared by the bioinformatics method. The phylogenetic tree was constructed after tailoring alignment. The results showed that a stable genetic phenomenon was indicated in the evolutionary process of App. The isolates derived from China were clustered and showed a high degree of conservation. They had a certain genetic relationship with the British and American strains, but had far relationship with the strains from Japan which was a neighboring country of China. The isolates from different countries in the Eurasian continent shared high homology. The isolates of the two regions originated from common ancestors. 展开更多
关键词 ACTINOBACILLUS pleuropneumoniae genetic evolution PHYLOgenetic TREE HOMOLOGY comparison ORIGIN Relationship
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Analysis of Genetic Evolution of Escherichia fergusonii
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作者 Junhua LIU Yilian ZHOU +2 位作者 Yaoxin CUI Yanfei LIU Jiande YANG 《Agricultural Biotechnology》 CAS 2020年第5期54-57,共4页
[Objectives]This study was conducted to explore the genetic evolution of Escherichia fergusonii in different countries and regions,and to clarify the genetic relationship of E.fergusonii in different countries and reg... [Objectives]This study was conducted to explore the genetic evolution of Escherichia fergusonii in different countries and regions,and to clarify the genetic relationship of E.fergusonii in different countries and regions.[Methods]Bioinformatics method and bacterial 16 S rRNA sequencing technology were used to sort out and prune 16 S rRNA genes isolated in laboratory and searched in NCBI database to construct a molecular evolutionary tree for analysis and comparison.[Results]The direction of evolution of E.fergusonii has broken through regions,and there was cross evolution among continents.The origin of E.fergusonii was the Asian continent,and its adaptability to arid climate was not strong.[Conclusions]This study revealed the genetic evolution laws of E.fergusonii in the spread and mutation of livestock and poultry diseases,and provides a theoretical reference for the prevention and treatment of the disease. 展开更多
关键词 Escherichia fergusonii genetic evolution relationship evolutionary tree HOMOLOGY KINSHIP ORIGIN
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Whole-genome sequencing provides insights into the evolutionary adaptation and conservation of gibbons
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作者 Guiqiang Wang Yajiang Wu +8 位作者 Song Wang Ting Jia Peng Yang Zhongshi Xu Wenhui Niu Fen Shan Chen Wang Wu Chen Ting Sun 《Journal of Genetics and Genomics》 2026年第2期269-282,共14页
Gibbons are small,arboreal apes that play a critical role in tropical biodiversity and ecosystem ecology.However,nearly all species of gibbons are threatened by habitat loss,illegal trade,hunting,and other human activ... Gibbons are small,arboreal apes that play a critical role in tropical biodiversity and ecosystem ecology.However,nearly all species of gibbons are threatened by habitat loss,illegal trade,hunting,and other human activities.Long-term poor understanding of their genetics and evolution undermines effective conservation efforts.In this study,we analyse comparative population genomic data of four Nomascus species.Our results reveal strong genetic differentiation and gene flow among Nomascus species.Additionally,we identify genomic features that are potentially related to natural selection linked to vocalization,fructose metabolism,motor balance,and body size,consistent with the unique phenotype and adaptability of gibbons.Inbreeding,coupled with population declines due to climate change and historical human activities,leads to reduced genetic diversity and the accumulation of deleterious variations that likely affect cardiovascular disease and the reproductive potential of gibbons and further reduce their fitness,highlighting the urgent need for effective conservation strategies. 展开更多
关键词 GIBBONS genetic diversity Population history Adaptive evolution CONSERVATION
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Comprehensive clinical and genetic architecture of familial amyotrophic lateral sclerosis in China:A 15-year cohort study with 302 families
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作者 Wei Zheng Lu Xu +6 位作者 Jinling Cai Jinwen Hou Lu Chen Nan Zhang Siyan Zhan Dongsheng Fan Ji He 《Neural Regeneration Research》 2026年第6期2573-2579,共7页
The growing recognition of the role of genetics in the development of amyotrophic lateral sclerosis is evident.However,there has yet to be a comprehensive analysis of the clinical characteristics and genetics of famil... The growing recognition of the role of genetics in the development of amyotrophic lateral sclerosis is evident.However,there has yet to be a comprehensive analysis of the clinical characteristics and genetics of familial amyotrophic lateral sclerosis in an Asian population.This study aimed to provide an in-depth analysis of the clinical features and genetic spectrum of familial amyotrophic lateral sclerosis over 15 years in a clinic-based cohort of patients from the Chinese mainland.Enrollment of 302 amyotrophic lateral sclerosis families from 28 provinces was undertaken from January 2008 to September 2023.A group-based trajectory model for disease progression based on amyotrophic lateral sclerosis Functional Rating Scale-Revised(ALSFRS-R)scores was validated using bootstrap internal validation in patients with familial amyotrophic lateral sclerosis,as well as patients with sporadic amyotrophic lateral sclerosis(matched at a 1:4 ratio,with replacement).DNA samples from 244 index patients were screened for variants in the pathogenic genes SOD1,FUS,TDP43,and C9ORF72,of which 146 were also subjected to genome-wide next-generation sequencing.Gene-level burden analysis was used to evaluate the distribution of rare variants in the cohort.We found that rapid dynamic disease progression was associated with an older age at onset,shorter diagnostic delay,lower body mass index,bulbar onset,and≥1 affected first-degree relative.Certain attributes,such as age at onset and time from onset to diagnosis,had comparable impacts on the clinical progression trajectories of both familial amyotrophic lateral sclerosis and sporadic amyotrophic lateral sclerosis.Harboring pathogenic/likely pathogenic variants in amyotrophic lateral sclerosis-causative genes reduced the age of onset of familial amyotrophic lateral sclerosis.Among the patients with familial amyotrophic lateral sclerosis,17.8%possessed≥2 pathogenic/likely pathogenic variants.Sequencing kernel association test analysis showed that the SOD1 rare variant burden(P=1.3e-15)was associated with a significant risk of familial amyotrophic lateral sclerosis.Our findings conclusively confirmed the clinical features and genetic spectrum of familial amyotrophic lateral sclerosis over 15 years in a clinical cohort from China,contributing to a deeper understanding of genotype-phenotype relationships in familial amyotrophic lateral sclerosis.This comprehensive evaluation of specific clinical characteristics,clinical prognosis,and genetic variants of amyotrophic lateral sclerosis based on detailed clinical and genetic information may lead to the development of genotype-specific treatment approaches. 展开更多
关键词 China COHORT EPIDEMIOLOGICAL familial amyotrophic lateral sclerosis gene-level burden analysis genetic GENOTYPE group-based trajectory model PATHOGENIC PHENOTYPE
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Genetic Diversity in Main Cultivars of Safflower in Xinjiang Uighur Autonomous Region Based on RAPD Analysis 被引量:11
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作者 岳庆妮 葛娟 +3 位作者 王蕾 张霞 王绍明 王建明 《Agricultural Science & Technology》 CAS 2008年第4期34-38,共5页
[Objective] Study on the genetic diversity in main cultivars of safflower distributing in Xinjiang Uighur Autonomous Region by means of RAPD makers.[Method] Genomic DNAs of 29 safflower accessions from Xinjiang Uighur... [Objective] Study on the genetic diversity in main cultivars of safflower distributing in Xinjiang Uighur Autonomous Region by means of RAPD makers.[Method] Genomic DNAs of 29 safflower accessions from Xinjiang Uighur Autonomous Region were extracted for PCR amplification using 20 RAPD primers.[Result] Totally 156 bands were amplified,among which 144 bands were polymorphic(accounting for 92.31%),indicating that safflower is endowed with plentiful genetic diversity.Based on the DNA fingerprint,the 29 safflower accessions were grouped into four populations,the classification results may be not related with ecological regionality.[Conclusion] RAPD technique is an available tool to analyze the genetic diversity of safflower germplasm at molecular level. 展开更多
关键词 SAFFLOWER genetic diversity RAPD Cluster analysis
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RAPD analysis of genetic diversity of nine strains of Auricularia auricular cultivated in Heilongjiang Province 被引量:7
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作者 李玲 李杰 +3 位作者 邹丽 白素英 牛黎明 马玉堃 《Journal of Forestry Research》 SCIE CAS CSCD 2007年第2期136-138,共3页
Polymorphism of nine strains (CF05, CF09, 29, 916, AU9, Chang10, Chang7, 8808 and AU. Japanese) of A. auricular cultivated in Heilongjiang Province were analyzed by RAPD (Random Amplication polymorphic DNA). Thirt... Polymorphism of nine strains (CF05, CF09, 29, 916, AU9, Chang10, Chang7, 8808 and AU. Japanese) of A. auricular cultivated in Heilongjiang Province were analyzed by RAPD (Random Amplication polymorphic DNA). Thirteen primers were selected from forty PCR primers with 10bp long random primer. The results showed that nine strains of A. auricular have a high level of genetic diversity and the percentage of DNA polymorphic was 96.05. The genotypes of 9 strains of Auricularia auricular were identified by the fingerprints from primer 27 and primer 46 by RAPD analysis. The results are helpful for quickly identifying strains of A. auricular in its early breeding time, and also provides a powerful theoretic basis to differentiate strains (Auricularia auricular) whose morphology is very similar in breeding programs of edible fungus. 展开更多
关键词 Auricularia auricular RAPD analysis DNA fingerprint genetic diversity
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Genetic Analysis of a Biomass Mutant in Oryza sativa 被引量:12
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作者 廖子荣 黄东益 +2 位作者 牛杰 李俏 吴安迪 《Agricultural Science & Technology》 CAS 2008年第2期63-66,共4页
[ Objective ] The study aimed to reveal the genetic model of a biomass mutant in Oryza sativa. [ Method ] In the process of screening and identification of Bar-transgenic rice, a biomass mutant was found in 10 lines o... [ Objective ] The study aimed to reveal the genetic model of a biomass mutant in Oryza sativa. [ Method ] In the process of screening and identification of Bar-transgenic rice, a biomass mutant was found in 10 lines of T1 progenies. The mutant was investigated for genetic analysis and agronomic traits by herbicide spraying and PCR amplification. [ Result] The segregation ratio is consistent with mendelian law(3:1). The mutant assumed not only higher plant height, wider straw and earlier florescence, but also more tillers, bigger spikes and resultantly higher biomass. PCR detections indicated that no co-segregation was observed between mutant traits and target gene(Bar) in the T-DNA inserted, proving that the mutant is not caused by the insertion of T-DNA containing target gene (Bar). [ Conclusion] Our study may avail to understand the cloning of mutant gene and the mechanism of the mutant gene on biomass. 展开更多
关键词 Oryza sativa BIOMASS MUTANT genetic analysis
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