The genomic scale metabolic networks of the microorganisms can be constructed based on their genome se-quences,functional annotations,and biochemical reactions,reflecting almost all of the metabolic functions.Mathemat...The genomic scale metabolic networks of the microorganisms can be constructed based on their genome se-quences,functional annotations,and biochemical reactions,reflecting almost all of the metabolic functions.Mathematical simulations of metabolic fluxes could make these functions be visualized,thereby providing guidance for rational engineering design and experimental operations.This review summarized recently devel-oped flux simulation algorithms of microbial systems.For the single microbial systems,the optimal planning algorithm has low complexity because there is no interaction between microorganisms,and it can quickly simulate the stable metabolic states through the pseudo-steady hypothesis.Besides,the experimental conditions of single microbial systems are easier to reach or close to the optimal states of simulation,compared with pol-ymicrobial systems.The polymicrobial culture systems could outcompete the single microbial systems as they could relieve metabolic pressure through metabolic division,resource exchange,and complex substrate co-utilization.Besides,they provide varieties of intracellular production environments,which render them the po-tential to achieve efficient bioproduct synthesis.However,due to the quasi-steady hypothesis that restricts the simulation of the dynamic processes of microbial interactions and the algorithm complexity,there are few re-searches on simulation algorithms of polymicrobial metabolic fluxes.Therefore,this review also analyzed and combed the microbial interactions based on the commonly used hypothesis of maximizing growth rates,and studied the strategies of coupling interactions with optimal planning simulations for metabolism.Finally,this review provided new insights into the genomic scale metabolic flux simulations of polymicrobial systems.展开更多
An accurate critical heat flux（CHF） prediction method is the key factor for realizing the steady-state operation of a water-cooled divertor that works under one-sided high heating flux conditions.An improved CHF pre...An accurate critical heat flux（CHF） prediction method is the key factor for realizing the steady-state operation of a water-cooled divertor that works under one-sided high heating flux conditions.An improved CHF prediction method based on Euler＇s homogeneous model for flow boiling combined with realizable k-ε model for single-phase flow is adopted in this paper in which time relaxation coefficients are corrected by the Hertz-Knudsen formula in order to improve the calculation accuracy of vapor-liquid conversion efficiency under high heating flux conditions.Moreover,local large differences of liquid physical properties due to the extreme nonuniform heating flux on cooling wall along the circumference direction are revised by formula IAPWSIF97.Therefore,this method can improve the calculation accuracy of heat and mass transfer between liquid phase and vapor phase in a CHF prediction simulation of water-cooled divertors under the one-sided high heating condition.An experimental example is simulated based on the improved and the uncorrected methods.The simulation results,such as temperature,void fraction and heat transfer coefficient,are analyzed to achieve the CHF prediction.The results show that the maximum error of CHF based on the improved method is 23.7%,while that of CHF based on uncorrected method is up to 188%,as compared with the experiment results of Ref.[12].Finally,this method is verified by comparison with the experimental data obtained by International Thermonuclear Experimental Reactor（ITER）,with a maximum error of 6% only.This method provides an efficient tool for the CHF prediction of water-cooled divertors.展开更多
Sand/dust storms are some of the main hazards in arid and semi-arid zones. These storms also influence global environmental changes. By field observations, empirical statistics, and numerical simulations, pioneer rese...Sand/dust storms are some of the main hazards in arid and semi-arid zones. These storms also influence global environmental changes. By field observations, empirical statistics, and numerical simulations, pioneer researchers on these natural events have concluded the existence of a positive relationship between thermodynamic effects and sand/dust storms. Thermodynamic effects induce an unsteady stratified atmosphere to influence the process of these storms. However, studies on the relationship of thermodynamic effects with particles (i.e., sand and dust) are limited. In this article, wind tunnel with heating was used to simulate the quantitative relationship between thermodynamic effects and particle movement on different surfaces. Compared with the cold state, the threshold wind velocity of particles is found to be significantly decrease under the hot state. The largest decrease percentage exceedes 9% on fine and coarse sand surfaces. The wind velocity also has a three-power function in the sand transport rate under the hot state with increased sand transport. Thermodynamic effects are stronger on loose surfaces and fine particles, but weaker on compacted surfaces and coarse particles.展开更多
The behavior of nano-confined water is expected to be fundamentally different from the behavior of bulk water.At the nanoscale,it is still unclear whether water flows more easily along the convergent direction or the ...The behavior of nano-confined water is expected to be fundamentally different from the behavior of bulk water.At the nanoscale,it is still unclear whether water flows more easily along the convergent direction or the divergent one,and whether a hourglass shape is more convenient than a funnel shape for water molecules to pass through a nanotube.Here,we present an approach to explore these questions by changing the deformation position of a carbon nanotube.The results of our molecular dynamics simulation indicate that the water flux through the nanotube changes significantly when the deformation position moves away from the middle region of the tube.Different from the macroscopic level,we find water flux asymmetry（water flows more easily along the convergent direction than along the divergent one）,which plays a key role in a nano water pump driven by a ratchet-like mechanism.We explore the mechanism and calculate the water flux by means of the Fokker-Planck equation and find that our theoretical results are well consistent with the simulation results.Furthermore,the simulation results demonstrate that the effect of deformation location on the water flux will be reduced when the diameter of the nanochannel increases.These findings are helpful for devising water transporters or filters based on carbon nanotubes and understanding the molecular mechanism of biological channels.展开更多
基金support from the National Key R&D Program of China(2021YFC2100700)the National Natural Science Foundation of China(21838001,31961133018).
文摘The genomic scale metabolic networks of the microorganisms can be constructed based on their genome se-quences,functional annotations,and biochemical reactions,reflecting almost all of the metabolic functions.Mathematical simulations of metabolic fluxes could make these functions be visualized,thereby providing guidance for rational engineering design and experimental operations.This review summarized recently devel-oped flux simulation algorithms of microbial systems.For the single microbial systems,the optimal planning algorithm has low complexity because there is no interaction between microorganisms,and it can quickly simulate the stable metabolic states through the pseudo-steady hypothesis.Besides,the experimental conditions of single microbial systems are easier to reach or close to the optimal states of simulation,compared with pol-ymicrobial systems.The polymicrobial culture systems could outcompete the single microbial systems as they could relieve metabolic pressure through metabolic division,resource exchange,and complex substrate co-utilization.Besides,they provide varieties of intracellular production environments,which render them the po-tential to achieve efficient bioproduct synthesis.However,due to the quasi-steady hypothesis that restricts the simulation of the dynamic processes of microbial interactions and the algorithm complexity,there are few re-searches on simulation algorithms of polymicrobial metabolic fluxes.Therefore,this review also analyzed and combed the microbial interactions based on the commonly used hypothesis of maximizing growth rates,and studied the strategies of coupling interactions with optimal planning simulations for metabolism.Finally,this review provided new insights into the genomic scale metabolic flux simulations of polymicrobial systems.
基金supported by the National Magnetic Confinement Fusion Science Program of China(No.2010GB104005)National Natural Science Foundation of China(No.51406085)
文摘An accurate critical heat flux（CHF） prediction method is the key factor for realizing the steady-state operation of a water-cooled divertor that works under one-sided high heating flux conditions.An improved CHF prediction method based on Euler＇s homogeneous model for flow boiling combined with realizable k-ε model for single-phase flow is adopted in this paper in which time relaxation coefficients are corrected by the Hertz-Knudsen formula in order to improve the calculation accuracy of vapor-liquid conversion efficiency under high heating flux conditions.Moreover,local large differences of liquid physical properties due to the extreme nonuniform heating flux on cooling wall along the circumference direction are revised by formula IAPWSIF97.Therefore,this method can improve the calculation accuracy of heat and mass transfer between liquid phase and vapor phase in a CHF prediction simulation of water-cooled divertors under the one-sided high heating condition.An experimental example is simulated based on the improved and the uncorrected methods.The simulation results,such as temperature,void fraction and heat transfer coefficient,are analyzed to achieve the CHF prediction.The results show that the maximum error of CHF based on the improved method is 23.7%,while that of CHF based on uncorrected method is up to 188%,as compared with the experiment results of Ref.[12].Finally,this method is verified by comparison with the experimental data obtained by International Thermonuclear Experimental Reactor（ITER）,with a maximum error of 6% only.This method provides an efficient tool for the CHF prediction of water-cooled divertors.
基金Under the auspices of National Natural Science Foundation of China(No.40930741,41071009,41001005)Knowledge Innovation Programs of Chinese Academy of Sciences(No.KZCX2-YW-329)
文摘Sand/dust storms are some of the main hazards in arid and semi-arid zones. These storms also influence global environmental changes. By field observations, empirical statistics, and numerical simulations, pioneer researchers on these natural events have concluded the existence of a positive relationship between thermodynamic effects and sand/dust storms. Thermodynamic effects induce an unsteady stratified atmosphere to influence the process of these storms. However, studies on the relationship of thermodynamic effects with particles (i.e., sand and dust) are limited. In this article, wind tunnel with heating was used to simulate the quantitative relationship between thermodynamic effects and particle movement on different surfaces. Compared with the cold state, the threshold wind velocity of particles is found to be significantly decrease under the hot state. The largest decrease percentage exceedes 9% on fine and coarse sand surfaces. The wind velocity also has a three-power function in the sand transport rate under the hot state with increased sand transport. Thermodynamic effects are stronger on loose surfaces and fine particles, but weaker on compacted surfaces and coarse particles.
基金Project supported by the National Natural Science Foundation of China (Grant Nos. 11005093,10932010,and 10972199)the Zhejiang Provincial Natural Science,China (Grant Nos. Z6090556,Y6100384,and Y607425)+1 种基金the Zhejiang Provincial Education Department,China (Grant No. Y200805556)the Hong Kong Polytechnic University,China (Grant No. G-YG84)
文摘The behavior of nano-confined water is expected to be fundamentally different from the behavior of bulk water.At the nanoscale,it is still unclear whether water flows more easily along the convergent direction or the divergent one,and whether a hourglass shape is more convenient than a funnel shape for water molecules to pass through a nanotube.Here,we present an approach to explore these questions by changing the deformation position of a carbon nanotube.The results of our molecular dynamics simulation indicate that the water flux through the nanotube changes significantly when the deformation position moves away from the middle region of the tube.Different from the macroscopic level,we find water flux asymmetry（water flows more easily along the convergent direction than along the divergent one）,which plays a key role in a nano water pump driven by a ratchet-like mechanism.We explore the mechanism and calculate the water flux by means of the Fokker-Planck equation and find that our theoretical results are well consistent with the simulation results.Furthermore,the simulation results demonstrate that the effect of deformation location on the water flux will be reduced when the diameter of the nanochannel increases.These findings are helpful for devising water transporters or filters based on carbon nanotubes and understanding the molecular mechanism of biological channels.
