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Fast algorithm for constructing neighbor-joining phylogenetic trees 被引量:3
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作者 陈宁涛 王能超 施保昌 《Journal of Southeast University(English Edition)》 EI CAS 2006年第2期176-179,共4页
To improve the performance of Saitou and Nei's algorithm (SN) and Studier and Keppler's improved algorithm (SK) for constructing neighbor-joining phylogenetic trees and reduce the time complexity of the computat... To improve the performance of Saitou and Nei's algorithm (SN) and Studier and Keppler's improved algorithm (SK) for constructing neighbor-joining phylogenetic trees and reduce the time complexity of the computation, a fast algorithm is proposed. The proposed algorithm includes three techniques. First, a linear array A[N] is introduced to store the sum of every row of the distance matrix (the same as SK), which can eliminate many repeated computations. Secondly, the value of A [i] is computed only once at the beginning of the algorithm, and is updated by three elements in the iteration. Thirdly, a very compact formula for the sum of all the branch lengths of operational taxonomic units (OTUs) i and j is designed, and the correctness of the formula is proved. The experimental results show that the proposed algorithm is from tens to hundreds times faster than SN and roughly two times faster than SK when N increases, constructing a tree with 2 000 OTUs in 3 min on a current desktop computer. To earn the time with the cost of the space and reduce the computations in the innermost loop are the basic solutions for algorithms with many loops. 展开更多
关键词 phylogenetic tree neighbor-joining method fast algorithm progressive multiple alignment
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Improvement and performance of parallel multilevel fast multipole algorithm 被引量:16
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作者 Zhanhe Liu Peilin Huang +1 位作者 Zhe Wu Xu Gao 《Journal of Systems Engineering and Electronics》 SCIE EI CSCD 2011年第1期164-169,共6页
The method of establishing data structures plays an important role in the efficiency of parallel multilevel fast multipole algorithm(PMLFMA).Considering the main complements of multilevel fast multipole algorithm(M... The method of establishing data structures plays an important role in the efficiency of parallel multilevel fast multipole algorithm(PMLFMA).Considering the main complements of multilevel fast multipole algorithm(MLFMA) memory,a new parallelization strategy and a modified data octree construction scheme are proposed to further reduce communication in order to improve parallel efficiency.For far interaction,a new scheme called dynamic memory allocation is developed.To analyze the workload balancing performance of a parallel implementation,the original concept of workload balancing factor is introduced and verified by numerical examples.Numerical results show that the above measures improve the parallel efficiency and are suitable for the analysis of electrical large-scale scattering objects. 展开更多
关键词 multilevel fast multipole algorithm(MLFMA) electromagnetic scattering PARALLELIZATION radar cross section(RCS).
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基于自适应阈值的型钢精确角点FAST检测算法
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作者 包家汉 孙德尚 +1 位作者 黄建中 胡政 《上海交通大学学报》 北大核心 2025年第5期691-702,共12页
基于机器视觉的在线型钢平直度检测中,对型钢图像关键角点快速、准确地提取是实现精确检测的关键技术问题.针对加速分割检验特征提取(FAST)算法需要人工设定角点筛选阈值和角点提取存在大量伪角点的问题,提出一种自适应阈值生成及校正策... 基于机器视觉的在线型钢平直度检测中,对型钢图像关键角点快速、准确地提取是实现精确检测的关键技术问题.针对加速分割检验特征提取(FAST)算法需要人工设定角点筛选阈值和角点提取存在大量伪角点的问题,提出一种自适应阈值生成及校正策略,能够在自动获取初始阈值的基础上,根据角点数是否达到初始角点集要求对阈值实时校正直至达到适当值,以减少关键角点遗漏.在采用FAST提取角点的基础上,利用最小核心值相似区域(SUSAN)算法剔除伪角点,以保证关键角点提取的有效性.试验证明,这种基于自适应阈值的FAST角点检测算法(FAST-A),在检测环境和对象特性发生变化时,仍然可以准确、快速地检测到型钢关键角点,在为型钢平直度检测实时提供精确角点的基础上,提高角点提取的自适应性. 展开更多
关键词 型钢 角点检测 加速分割检验特征提取算法 最小核心值相似区域算法 自适应阈值
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Fast recursive algorithm for two-dimensional Tsallis entropy thresholding method 被引量:2
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作者 Tang Yinggan Di Qiuyan Guan Xinping 《Journal of Systems Engineering and Electronics》 SCIE EI CSCD 2009年第3期619-624,共6页
Recently, a two-dimensional (2-D) Tsallis entropy thresholding method has been proposed as a new method for image segmentation. But the computation complexity of 2-D Tsallis entropy is very large and becomes an obst... Recently, a two-dimensional (2-D) Tsallis entropy thresholding method has been proposed as a new method for image segmentation. But the computation complexity of 2-D Tsallis entropy is very large and becomes an obstacle to real time image processing systems. A fast recursive algorithm for 2-D Tsallis entropy thresholding is proposed. The key variables involved in calculating 2-D Tsallis entropy are written in recursive form. Thus, many repeating calculations are avoided and the computation complexity reduces to O(L2) from O(L4). The effectiveness of the proposed algorithm is illustrated by experimental results. 展开更多
关键词 image segmentation THRESHOLDING Tsallis entropy fast recursive algorithm
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An adaptive reanalysis method for genetic algorithm with application to fast truss optimization 被引量:3
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作者 Tao Xu Wenjie Zuo +2 位作者 Tianshuang Xu Guangcai Song Ruichuan Li 《Acta Mechanica Sinica》 SCIE EI CAS CSCD 2010年第2期225-234,共10页
Although the genetic algorithm (GA) for structural optimization is very robust, it is very computationally intensive and hence slower than optimality criteria and mathematical programming methods. To speed up the de... Although the genetic algorithm (GA) for structural optimization is very robust, it is very computationally intensive and hence slower than optimality criteria and mathematical programming methods. To speed up the design process, the authors present an adaptive reanalysis method for GA and its applications in the optimal design of trusses. This reanalysis technique is primarily derived from the Kirsch's combined approximations method. An iteration scheme is adopted to adaptively determine the number of basis vectors at every generation. In order to illustrate this method, three classical examples of optimal truss design are used to validate the proposed reanalysis-based design procedure. The presented numerical results demonstrate that the adaptive reanalysis technique affects very slightly the accuracy of the optimal solutions and does accelerate the design process, especially for large-scale structures. 展开更多
关键词 Truss structure Adaptive reanalysis ·Genetic algorithm ·fast optimization
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General and efficient parallel approach of finite element-boundary integral-multilevel fast multipole algorithm 被引量:3
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作者 Pan Xiaomin Sheng Xinqing 《Journal of Systems Engineering and Electronics》 SCIE EI CSCD 2008年第2期207-212,共6页
A general and efficient parallel approach is proposed for the first time to parallelize the hybrid finiteelement-boundary-integral-multi-level fast multipole algorithm (FE-BI-MLFMA). Among many algorithms of FE-BI-M... A general and efficient parallel approach is proposed for the first time to parallelize the hybrid finiteelement-boundary-integral-multi-level fast multipole algorithm (FE-BI-MLFMA). Among many algorithms of FE-BI-MLFMA, the decomposition algorithm (DA) is chosen as a basis for the parallelization of FE-BI-MLFMA because of its distinct numerical characteristics suitable for parallelization. On the basis of the DA, the parallelization of FE-BI-MLFMA is carried out by employing the parallelized multi-frontal method for the matrix from the finiteelement method and the parallelized MLFMA for the matrix from the boundary integral method respectively. The programming and numerical experiments of the proposed parallel approach are carried out in the high perfor- mance computing platform CEMS-Liuhui. Numerical experiments demonstrate that FE-BI-MLFMA is efficiently parallelized and its computational capacity is greatly improved without losing accuracy, efficiency, and generality. 展开更多
关键词 finite element-boundary integral-multilevel fast multipole algorithm parallelization.
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Fast algorithm for simulation of normal and oblique penetration into limestone targets 被引量:2
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作者 Xuguang CHEN Duo ZHANG +1 位作者 Shujian YAO Fangyun LU 《Applied Mathematics and Mechanics(English Edition)》 SCIE EI CSCD 2017年第5期671-688,共18页
A fast algorithm is proposed to predict penetration trajectory in simulation of normal and oblique penetration of a rigid steel projectile into a limestone target. The algorithm is designed based on the idea of isolat... A fast algorithm is proposed to predict penetration trajectory in simulation of normal and oblique penetration of a rigid steel projectile into a limestone target. The algorithm is designed based on the idea of isolation between the projectile and the target. Corresponding factors of influence are considered, including analytical load model, cratering effect, free surface effect, and separation-reattachment phenomenon. Besides, a method of cavity ring is used to study the process of cavity expansion. Further, description of the projectile's three-dimensional gesture is coded for fast calculation, named PENE3D. A presented. As a result, the algorithm is series of cases with selected normal and oblique penetrations are simulated by the algorithm. The predictions agree with the results of tests, showing that the proposed algorithm is fast and effective in simulation of the penetration process and prediction of the penetration trajectory. 展开更多
关键词 fast algorithm isolation between projectile and target analytical loading model ogive-nosed projectile limestone target
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A novel fast classification filtering algorithm for LiDAR point clouds based on small grid density clustering 被引量:5
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作者 Xingsheng Deng Guo Tang Qingyang Wang 《Geodesy and Geodynamics》 CSCD 2022年第1期38-49,共12页
Clustering filtering is usually a practical method for light detection and ranging(LiDAR)point clouds filtering according to their characteristic attributes.However,the amount of point cloud data is extremely large in... Clustering filtering is usually a practical method for light detection and ranging(LiDAR)point clouds filtering according to their characteristic attributes.However,the amount of point cloud data is extremely large in practice,making it impossible to cluster point clouds data directly,and the filtering error is also too large.Moreover,many existing filtering algorithms have poor classification results in discontinuous terrain.This article proposes a new fast classification filtering algorithm based on density clustering,which can solve the problem of point clouds classification in discontinuous terrain.Based on the spatial density of LiDAR point clouds,also the features of the ground object point clouds and the terrain point clouds,the point clouds are clustered firstly by their elevations,and then the plane point clouds are selected.Thus the number of samples and feature dimensions of data are reduced.Using the DBSCAN clustering filtering method,the original point clouds are finally divided into noise point clouds,ground object point clouds,and terrain point clouds.The experiment uses 15 sets of data samples provided by the International Society for Photogrammetry and Remote Sensing(ISPRS),and the results of the proposed algorithm are compared with the other eight classical filtering algorithms.Quantitative and qualitative analysis shows that the proposed algorithm has good applicability in urban areas and rural areas,and is significantly better than other classic filtering algorithms in discontinuous terrain,with a total error of about 10%.The results show that the proposed method is feasible and can be used in different terrains. 展开更多
关键词 Small grid density clustering DBSCAN fast classification filtering algorithm
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Fast interactive segmentation algorithm of image sequences based on relative fuzzy connectedness 被引量:1
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作者 Tian Chunna Gao Xinbo 《Journal of Systems Engineering and Electronics》 SCIE EI CSCD 2005年第4期750-755,共6页
A fast interactive segmentation algorithm of image-sequences based on relative fuzzy connectedness is presented. In comparison with the original algorithm, the proposed one, with the same accuracy, accelerates the seg... A fast interactive segmentation algorithm of image-sequences based on relative fuzzy connectedness is presented. In comparison with the original algorithm, the proposed one, with the same accuracy, accelerates the segmentation speed by three times for single image. Meanwhile, this fast segmentation algorithm is extended from single object to multiple objects and from single-image to image-sequences. Thus the segmentation of multiple objects from complex hackground and batch segmentation of image-sequences can be achieved. In addition, a post-processing scheme is incorporated in this algorithm, which extracts smooth edge with one-pixel-width for each segmented object. The experimental results illustrate that the proposed algorithm can obtain the object regions of interest from medical image or image-sequences as well as man-made images quickly and reliably with only a little interaction. 展开更多
关键词 fuzzy connectedness interactive image segmentation image-sequences segmentation multiple objects segmentation fast algorithm.
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A novel adjustable multiple cross-hexagonal search algorithm for fast block motion estimation 被引量:2
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作者 XIE Chun-lai CHEUNG Chun-ho LIU Wei-zhong 《Journal of Zhejiang University-Science A(Applied Physics & Engineering)》 SCIE EI CAS CSCD 2007年第8期1304-1310,共7页
In this paper,we propose a novel adjustable multiple cross-hexagonal search(AMCHS) algorithm for fast block motion estimation. It employs adjustable multiple cross search patterns(AMCSP) in the first step and then use... In this paper,we propose a novel adjustable multiple cross-hexagonal search(AMCHS) algorithm for fast block motion estimation. It employs adjustable multiple cross search patterns(AMCSP) in the first step and then uses half-way-skip and half-way-stop technique to determine whether to employ two hexagonal search patterns(HSPs) subsequently. The AMCSP can be used to find small motion vectors efficiently while the HSPs can be used to find large ones accurately to ensure prediction quality. Simulation results showed that our proposed AMCHS achieves faster search speed,and provides better distortion performance than other popular fast search algorithms,such as CDS and CDHS. 展开更多
关键词 Motion estimation fast search algorithm Adjustable search patterns Threshold strategy Hexagonal search pattern
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Fast direction of arrival algorithm based on vector-sensor arrays using wideband sources 被引量:1
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作者 孙国仓 惠俊英 陈阳 《Journal of Marine Science and Application》 2008年第3期195-199,共5页
An acoustic vector sensor(AVS)can capture more information than a conventional acoustic pressure sensor(APS).As a result,more output channels are required when multiple AVS are formed into arrays,making processing the... An acoustic vector sensor(AVS)can capture more information than a conventional acoustic pressure sensor(APS).As a result,more output channels are required when multiple AVS are formed into arrays,making processing the data stream computationally intense.This paper proposes a new algorithm based on the propagator method for wideband coherent sources that eliminates eigen-decomposition in order to reduce the computational burden.Data from simulations and lake trials showed that the new algorithm is valid:it resolves coherent sources,breaks left/right ambiguity,and allows inter element spacing to exceed a half-wavelength. 展开更多
关键词 acoustic vector sensor propagator method coherent processing fast algorithm
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Fast period estimation of X-ray pulsar signals using an improved fast folding algorithm 被引量:1
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作者 Minzhang SONG Yidi WANG +4 位作者 Wei ZHENG Liansheng LI Yusong WANG Xiaowei HU Yulong WU 《Chinese Journal of Aeronautics》 SCIE EI CAS CSCD 2023年第10期309-316,共8页
An accurate period is important to recover the pulse profile from a recorded photon event series of an X-ray pulsar and to estimate the pulse time of arrival,which is the measurement of X-ray pulsar navigation.Epoch f... An accurate period is important to recover the pulse profile from a recorded photon event series of an X-ray pulsar and to estimate the pulse time of arrival,which is the measurement of X-ray pulsar navigation.Epoch folding is a classical period estimation method in the time domain;however,its computational complexity grows as the number of trail periods increases.In order to reduce the computational complexity,this paper improves the fast folding algorithm through segment correlation and amplitude accumulation,which is based on the post-order traversal of a binary tree.Compared with epoch folding,the improved fast folding algorithm can achieve a similar accuracy at the cost of a lower computational burden.Compared with the original fast folding algorithm,the improved algorithm can be applied to detectors with a much smaller effective area.The performance of the method is investigated by simulation data and observation data from the Neutron star Interior Composition Explorer(NICER). 展开更多
关键词 Epoch folding fast folding algorithm Pulsar spin period Phase estimation X-ray pulsar
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Fast identification of mural pigments at Mogao Grottoes using a LIBS-based spectral matching algorithm 被引量:1
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作者 Yiming ZHANG Duixiong SUN +4 位作者 Yaopeng YIN Zongren YU Bomin SU Chenzhong DONG Maogen SU 《Plasma Science and Technology》 SCIE EI CAS CSCD 2022年第8期23-31,共9页
To quickly identify the mineral pigments in the Dunhuang murals,a spectral matching algorithm(SMA)based on four methods was combined with laser-induced breakdown spectroscopy(LIBS)for the first time.The optimal range ... To quickly identify the mineral pigments in the Dunhuang murals,a spectral matching algorithm(SMA)based on four methods was combined with laser-induced breakdown spectroscopy(LIBS)for the first time.The optimal range of LIBS spectrum for mineral pigments was determined using the similarity value between two different types of samples of the same pigment.A mineral pigment LIBS database was established by comparing the spectral similarities of tablets and simulated samples,and this database was successfully used to identify unknown pigments on tablet,simulated,and real mural debris samples.The results show that the SMA method coupled with the LIBS technique has great potential for identifying mineral pigments. 展开更多
关键词 mural pigments laser-induced breakdown spectroscopy fast identification and classification spectral matching algorithm spectral database
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Fast Affine Projection Algorithm for Adaptive Noise Canceling and Its Application on the Fetal Electrocardiogram Extraction 被引量:1
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作者 宫延伟 吉小军 +1 位作者 黄峰一 阮晓虹 《Journal of Shanghai Jiaotong university(Science)》 EI 2009年第6期690-694,共5页
Aimed at the problem of adaptive noise canceling(ANC),three implementary algorithms which are least mean square(LMS) algorithm,recursive least square(RLS) algorithm and fast affine projection(FAP) algorithm,have been ... Aimed at the problem of adaptive noise canceling(ANC),three implementary algorithms which are least mean square(LMS) algorithm,recursive least square(RLS) algorithm and fast affine projection(FAP) algorithm,have been researched.The simulations were made for the performance of these algorithms.The extraction of fetal electrocardiogram(FECG) is applied to compare the application effect of the above algorithms.The proposed FAP algorithm has obvious advantages in computational complexity,convergence speed and steadystate error. 展开更多
关键词 adaptive noise canceling (ANC) least mean square (LMS) algorithm recursive least square (RLS) algorithm fast affine projection (FAP) algorithm fetal electrocardiogram (FECG)
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Fast Algorithm for Nonsubsampled Contourlet Transform 被引量:5
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作者 Chun-Man YAN Bao-Long GUO Meng YI 《自动化学报》 EI CSCD 北大核心 2014年第4期757-762,共6页
多尺度的几何分析(MGA ) 为图象处理作为有效策略被认出了。作为 MGA 的分离工具之一, nonsubsampled contourlet 变换(NSCT ) 广泛地被使用了图象降噪,图象熔化,图象改进,特征抽取等等。然而,处理表演由于它的高冗余性被限制,并... 多尺度的几何分析(MGA ) 为图象处理作为有效策略被认出了。作为 MGA 的分离工具之一, nonsubsampled contourlet 变换(NSCT ) 广泛地被使用了图象降噪,图象熔化,图象改进,特征抽取等等。然而,处理表演由于它的高冗余性被限制,并且导致集中的计算效率。因此,它的快算法在实践被需要。在这份报纸,我们采用一个优化方向性的过滤器银行(DFB ) 并且把它嵌进 NSCT 当使重建的表演的损失细微时,显著地加速计算速度。试验性的结果证明重建的图象质量能满足人的视觉系统。而且,改进 NSCT 有速度关于若干次比传统的的。图象降噪上的试验性的结果也验证建议方法的可行性和效率。 展开更多
关键词 CONTOURLET变换 快速算法 抽样 多尺度几何分析 图像处理 图像去噪 运算速度 图像融合
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A RECURSIVE AND PARALLEL FAST JPDA ALGORITHM
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作者 Cheng Hongwei Zhou Yiyu Sun Zhongkang(institute of Electronic Engineering, National University of Defense Technology, Hunan Changsha 410073) 《Journal of Electronics(China)》 1999年第4期289-298,共10页
Joint Probabilistic Data Association (JPDA) is a very fine optimal multitarget tracking and association algorithm in clutter. However, the calculation explosion effect in computation of association probabilities has b... Joint Probabilistic Data Association (JPDA) is a very fine optimal multitarget tracking and association algorithm in clutter. However, the calculation explosion effect in computation of association probabilities has been a difficulty. This paper will discuss a method based on layered searching construction of association hypothesis events. According to the method, the searching schedule of the association events between two layers can be recursive and with independence, so it can also be implemented in parallel structure. Comparative analysis of the method with relative methods in other references and corresponding computer simulation tests and results are also given in the paper. 展开更多
关键词 PROBABILITY Data ASSOCIATION and TRACKING fast algorithm
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NEW FAST ALGORITHM OF 2-D DISCRETE COSINE TRANSFORM
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作者 王新成 周晓明 +1 位作者 卢颉 朱维乐 《Journal of Electronics(China)》 1995年第3期270-275,共6页
In this paper, a new algorithm for the fast computation of a 2-D discrete cosine transform (DCT) is presented. It is shown that the N×N DCT, where N = 2m, can be computed using only N 1-D DCT’s and additions, in... In this paper, a new algorithm for the fast computation of a 2-D discrete cosine transform (DCT) is presented. It is shown that the N×N DCT, where N = 2m, can be computed using only N 1-D DCT’s and additions, instead of using 2N 1-D DCT’s as in the conventional row-column approach. Hence the total number of multiplications for the proposed algorithm is only half of that required for the row-column approach, and is also less than that of most of other fast algorithms, while the number of additions is almost comparable to that of others. 展开更多
关键词 IMAGE PROCESSING DISCRETE COSINE TRANSFORM fast algorithm
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A FAST ALGORITHM FOR DISCRETE HARTLEY TRANSFORM OF ARBITRARY LENGTH
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作者 曾泳泓 《Journal of Electronics(China)》 1993年第3期209-216,共8页
DHT of length p<sup>l</sup>q(p is odd and q is arbitrary) is turned into p<sup>l</sup> DHTs of length qand some additional operations, while the additional operations only involves the comput... DHT of length p<sup>l</sup>q(p is odd and q is arbitrary) is turned into p<sup>l</sup> DHTs of length qand some additional operations, while the additional operations only involves the computation ofcos-DFT and sin-DFT with length p. If the length of a DHT is p<sub>1</sub><sup>l<sub>1</sub></sup>…P<sub>N</sub><sup>l<sub>N</sub></sup>2<sup>l</sup>(P<sub>1</sub>…,P<sub>N</sub> are oddprimes), a fast algorithm is obtained by the similar recursive technique. Therefore, the algorithmcan compute DHT of arbitrary length. The paper also Proves that operations for computingDHT of length N by the algorithm are no more than O(Nlog<sub>2</sub>N), when the length is N=p<sup>l</sup>,operations of the algorithm are fewer than that of other known algorithms. 展开更多
关键词 SIGNAL processing DISCRETE Hartley TRANSFORM fast algorithm
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A fast algorithm for multivariate Hermite interpolation
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作者 LEI Na TENG Yuan REN Yu-xue 《Applied Mathematics(A Journal of Chinese Universities)》 SCIE CSCD 2014年第4期438-454,共17页
Multivariate Hermite interpolation is widely applied in many fields, such as finite element construction, inverse engineering, CAD etc.. For arbitrarily given Hermite interpolation conditions, the typical method is to... Multivariate Hermite interpolation is widely applied in many fields, such as finite element construction, inverse engineering, CAD etc.. For arbitrarily given Hermite interpolation conditions, the typical method is to compute the vanishing ideal I (the set of polynomials satisfying all the homogeneous interpolation conditions are zero) and then use a complete residue system modulo I as the interpolation basis. Thus the interpolation problem can be converted into solving a linear equation system. A generic algorithm was presented in [18], which is a generalization of BM algorithm [22] and the complexity is O(τ^3) where r represents the number of the interpolation conditions. In this paper we derive a method to obtain the residue system directly from the relative position of the points and the corresponding derivative conditions (presented by lower sets) and then use fast GEPP to solve the linear system with O((τ + 3)τ^2) operations, where τ is the displacement-rank of the coefficient matrix. In the best case τ = 1 and in the worst case τ = [τ/n], where n is the number of variables. 展开更多
关键词 vanishing ideal multivariate Hermite interpolation displacement structure fast GEPP algorithm.
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VCSRA:A fast and accurate multiple sequence alignment algorithm with a high degree of parallelism
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作者 Dong Dong Wenhe Su +2 位作者 Wenqiang Shi Quan Zou Shaoliang Peng 《Journal of Genetics and Genomics》 SCIE CAS CSCD 2018年第7期407-410,共4页
Multiple sequence alignment (MSA) is the alignment among more than two molecular biological sequences, which is a fundamental method to analyze evolutionary events such as mutations, insertions, deletions, and re-ar... Multiple sequence alignment (MSA) is the alignment among more than two molecular biological sequences, which is a fundamental method to analyze evolutionary events such as mutations, insertions, deletions, and re-arrangements. In theory, a dynamic programming algorithm can be employed to produce the optimal MSA. However, this leads to an explosive increase in computing time and memory consumption as the number of sequences increases (Taylor, 1990). So far, MSA is still regarded as one of the most challenging problems in bioinformatics and computational biology (Chatzou et al., 2016). 展开更多
关键词 VCSRA A fast and accurate multiple sequence alignment algorithm a high degree of parallelism
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