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改良聚合酶链反应检测HBV共价闭合环状DNA 被引量:6
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作者 汤勃 王宇明 +1 位作者 刘俊 张瑞 《世界华人消化杂志》 CAS 北大核心 2005年第18期2188-2192,共5页
目的:建立一种基于聚合酶链反应(PCR)的简便快速、具有较高敏感性和特异性的检测乙型肝炎病毒(HBV)共价闭合环状DNA(cccDNA)的方法.方法:分别提取HepG2.2.15细胞内的cccDNA及培养上清中的松驰环DNA(rcDNA)样品,试剂盒纯化;设计2对特异... 目的:建立一种基于聚合酶链反应(PCR)的简便快速、具有较高敏感性和特异性的检测乙型肝炎病毒(HBV)共价闭合环状DNA(cccDNA)的方法.方法:分别提取HepG2.2.15细胞内的cccDNA及培养上清中的松驰环DNA(rcDNA)样品,试剂盒纯化;设计2对特异性引物,其扩增区域跨越rcDNA单链区;设计2对非特异性引物,扩增区域位于rcDNA双链区.经单链特异性绿豆芽核酸酶(MBN)分别消化cccDNA及rcDNA样品;以特异性引物和非特异性引物对消化前后的两种样品分别进行PCR扩增,并改变PCR扩增参数如底物数量、循环次数等,观察特异性引物能否顺利扩增消化后的cccDNA,同时又不扩增消化后的rcDNA.HBV基因组质粒样品作为对照.此外还采用实际乙型肝炎患者体内病毒样本检验此策略的实用性.结果:分别以非特异性引物和特异性引物扩增不同模板数的HBVrcDNA样品,2对非特异性引物可扩增出模板数在102以上的HBVrcDNA样品,2对cccDNA特异性引物也可以扩增出模板数在104以上的样品.特异性引物在PCR反应模板数较多时将不能区分消化前的rcDNA和cccDNA.不同数量HBVcccDNA和rcDNA模板在MBN消化前后,分别应用非特异性引物和特异性引物进行PCR扩增,发现不同数量的cccDNA模板分子经过MBN消化后,仍可用特异性引物和非特异性引物扩增出相应条带;rcDNA样品经过MBN消化后,非特异性引物可扩增出产物条带,而特异性引物无法扩增出条带.采用此种策略,我们发现慢性乙肝患者血清HBV核酸样品主要成份为rcDNA,并带有少量cccDNA,而肝细胞内HBV核酸样品富含cccDNA,与实际情况一致.结论:联合应用MBN选择性消化和cccDNA特异性引物的PCR检测法简便快速,敏感性和特异性均较满意. 展开更多
关键词 肝炎病毒.乙型 共价闭合环状DNA 聚合酶链反应 绿豆芽核酸酶
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基于DNA链置换反应的圆环形逻辑门设计 被引量:4
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作者 崔光照 王茜 +3 位作者 张俊亚 张勋才 王子成 王延峰 《轻工学报》 CAS 2016年第1期55-60,共6页
利用DNA链置换技术反应进程的可编程性和DNA链动力学特征的可预测性,基于DNA链置换反应,以圆环形DNA为基本单元,构造出与非门和或非门逻辑计算模型.该模型以单链DNA分子为输入信号,利用圆环形DNA分子包含的多个DNA识别区域和小支点区域... 利用DNA链置换技术反应进程的可编程性和DNA链动力学特征的可预测性,基于DNA链置换反应,以圆环形DNA为基本单元,构造出与非门和或非门逻辑计算模型.该模型以单链DNA分子为输入信号,利用圆环形DNA分子包含的多个DNA识别区域和小支点区域,通过探测荧光信号精确识别其输出信号,来确保DNA分子逻辑门输出结果的正确性与广泛适用性. 展开更多
关键词 DNA链置换反应 圆环形DNA 逻辑门
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Effect of interferon-γ and tumor necrosis factor-α on hepatitis B virus following lamivudine treatment 被引量:1
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作者 Hong Shi Lu Lu +2 位作者 Ning-Ping Zhang Shun-Cai Zhang Xi-Zhong Shen 《World Journal of Gastroenterology》 SCIE CAS CSCD 2012年第27期3617-3622,共6页
AIM: To evaluate anti-hepatitis B virus (HBV) activity and cytotoxicity of interferon-α, (IFN-3,) and tumor ne- crosis factor-α (TNF-α) following lamivudine treatment of HepG2.2.15 cells. METHODS: HepG2.2.1... AIM: To evaluate anti-hepatitis B virus (HBV) activity and cytotoxicity of interferon-α, (IFN-3,) and tumor ne- crosis factor-α (TNF-α) following lamivudine treatment of HepG2.2.15 cells. METHODS: HepG2.2.15 cells were treated with 2 pmol/L lamivudine for 16 d (lamivudine group), cultured for 10 d, followed by 5 ng/ml TNF-α and 1000 U/mL IFN-γ, for 6 d (cytokine group), or treated with 2 ~tmol/L lami- vudine for 10 d followed by 5 ng/mL TNF-α and 1000 U/mL IFN-γ, for 6 d (sequential group), or cultured without additions for 16 d (control group). Intracellular DNA was extracted from 3 ×10^ HepG2.2.15 cells from each group. The extracted DNA was further purified with mung bean nuclease to remove HBV relaxed circu- lar DNA that may have remained. Both HBV covalently closed circular DNA (cccDNA) and HBV DNA were exam- ined with real-time polymerase chain reaction. The titers of hepatitis B surface antigen (HBsAg) and hepatitis B e antigen (HBeAg) were quantified with enzyme-linkedimmunosorbent assay. Cell viability was measured with the cell counting kit-8 assay. RESULTS: Compared to lamivudine alone (22.63%±0.12%), both sequential (51.50% ± 0.17%, P = 0.034) and cytokine treatment (49.66% ± 0.06%, P = 0.041) showed a stronger inhibition of HBV cccDNA; the dif- ference between the.sequential and cytokine groups was not statistically significant (51.50% ± 0.17% vs 49.66% ± 0.06%, P = 0.88). The sequential group showed less inhibition of HBV DNA replication than the lamivudine group (67.47% ±0.02% vs 82.48% ± 0.05%, P = 0.014); the difference between the sequen- tial and cytokine groups was not statistically significant (67.47% ± 0.02% vs 57.45% ± 0.07%, P = 0.071). The levels of HBsAg and HBeAg were significantly de- creased in the sequential treatment group compared to the other groups [HBsAg: 3.48 ± 0.04 (control), 3.09 ± 0.08 (lamivudine), 2.55± 0.13 (cytokine), 2.32 ± 0.08 (sequential), P = 0.042 for each between-group comparison; HBeAg 3.48 ± 0.01 (control), 3.08 ± 0.08 (lamivudine), 2.57 ± 0.15 (cytokine), 2.34 ± 0.12 (se- quential), P = 0.048 for each between-group compari- son]. Cell viability in the cytokine group was reduced to 58.03% ± 8.03% compared with control cells (58.03% ± 8.03% vs 100%, P = 0.000). Lamivudine pretreat- ment significantly reduced IFN-γ, ± TNF-αmediated toxicity of HepG2.2.15 cells [85.82% =1= 5.43% (sequen- tial) vs 58.03% ± 8.03% (cytokine), P = 0.002]. CONCLUSION: Sequential treatment overcame the lower ability of lamivudine alone to inhibit cccDNA and precluded the aggressive cytotoxicity involving IFN-y and TNF-α by decreasing the viral load. 展开更多
关键词 Hepatitis B virus Covalently closed circulardna INTERFERON-Γ Tumor necrosis factor-α LAMIVUDINE
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乙型肝炎病毒共价闭合环状DNA的研究进展 被引量:2
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作者 王洁 汪茂荣 《中华肝脏病杂志》 CAS CSCD 北大核心 2011年第6期479-480,共2页
共价闭合环状DNA(covalently closed circular DNA,cccDNA)在HBV的复制及感染状态的建立过程中起着非常重要的作用,现将cccDNA的研究进展总结如下。一、HBV cccDNA的检测方法1.PCR法:PCR法包括普通PCR和定量PCR。由于松弛环状DNA... 共价闭合环状DNA(covalently closed circular DNA,cccDNA)在HBV的复制及感染状态的建立过程中起着非常重要的作用,现将cccDNA的研究进展总结如下。一、HBV cccDNA的检测方法1.PCR法:PCR法包括普通PCR和定量PCR。由于松弛环状DNA(relaxed circula rDNA,rcDNA)在负链和正链上存在缺口, 展开更多
关键词 肝炎病毒 乙型 共价闭合环状DNA 松弛环状DNA
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