With the rapid development of sequencing technologies,especially the maturity of third-generation sequencing technologies,there has been a significant increase in the number and quality of published genome assemblies....With the rapid development of sequencing technologies,especially the maturity of third-generation sequencing technologies,there has been a significant increase in the number and quality of published genome assemblies.The emergence of these high-quality genomes has raised higher requirements for genome evaluation.Although numerous computational methods have been developed to evaluate assembly quality from various perspectives,the selective use of these evaluation methods can be arbitrary and inconvenient for fairly comparing the assembly quality.To address this issue,we have developed the Genome Assembly Evaluating Pipeline(GAEP),which provides a comprehensive assessment pipeline for evaluating genome quality from multiple perspectives,including continuity,completeness,and correctness.Additionally,GAEP includes new functions for detecting misassemblies and evaluating the assembly redundancy,which performs well in our testing.GAEP is publicly available at https://github.com/zyoptimistic/GAEP under the GPL3.0 License.With GAEP,users can quickly obtain accurate and reliable evaluation results,facilitating the comparison and selection of high-quality genome assemblies.展开更多
Assembly precision greatly influences the performance of complex high-end equipment.The traditional industrial assembly process and deviation transfer are implicit and uncertain,causing problems like poor component fi...Assembly precision greatly influences the performance of complex high-end equipment.The traditional industrial assembly process and deviation transfer are implicit and uncertain,causing problems like poor component fit and hard-to-trace assembly stress concentration.Assemblers can only check whether the dimensional tolerance of the component design is exceeded step by step in combination with prior knowledge.Inversion in industrial assembly optimizes assembly and design by comparing real and theoretical results and doing inversion analysis to reduce assembly deviation.The digital twin(DT)technology visualizes and predicts the assembly process by mapping real and virtual model parameters and states simultaneously,expanding parameter range for inversion analysis and improving inversion result accuracy.Problems in improving industrial assembly precision and the significance and research status of DT-driven parametric inversion of assembly tools,processes and object precision are summarized.It analyzes vital technologies for assembly precision inversion such as multi-attribute assembly process parameter sensing,virtual modeling of high-fidelity assembly systems,twin synchronization of assembly process data models,multi-physical field simulation,and performance twin model construction of the assembly process.Combined with human-cyber-physical system,augmented reality,and generative intelligence,the outlook of DT-driven assembly precision inversion is proposed,providing support for DT's use in industrial assembly and precision improvement.展开更多
As the demands for assembly quality and efficiency increase,robot-assisted assembly applications are becoming more widespread.Peg-in-hole assembly,as a typical form of assembly,has been widely researched by scholars.C...As the demands for assembly quality and efficiency increase,robot-assisted assembly applications are becoming more widespread.Peg-in-hole assembly,as a typical form of assembly,has been widely researched by scholars.Currently,robotic peg-in-hole assembly faces challenges such as complex analysis of part contact forces,difficulties in task modeling,and the failure of traditional strategies.Simply controlling the position of the robot's end effector cannot achieve high precision,high efficiency peg-in-hole assembly.Flexible assembly,especially intelligent flexible assembly,is becoming the future development trend.So there is a lack of comprehensive reviews on robotic flexible peg-in-hole assembly.This paper first outlines the basic components of peg-in-hole assembly and summarizes the two basic operational processes of peg-in-hole assembly,along with their related theoretical foundations.We then review and analyze the research on passive compliant assembly,active compliant assembly,and intelligent flexible assembly.Finally,it presents an outlook on the future development directions of robotic peg-in-hole assembly.展开更多
To address the challenges of insufficient visualization in the industrial robot assembly operation system and the limitation of visualizing only geometric attributes of physical properties,a method is proposed for con...To address the challenges of insufficient visualization in the industrial robot assembly operation system and the limitation of visualizing only geometric attributes of physical properties,a method is proposed for constructing an industrial robot assembly system based on virtual reality technology.Focusing on the shaft hole assembly,the mechanical characteristics of the industrial robot shaft hole assembly process are analyzed and a dynamic model is established for shaft hole assembly operations.The key elements of virtual assembly operations for industrial robots are summarized and a five-dimensional model is proposed for industrial robot virtual operations.Utilizing the Unity3D engine based on the 5-D model for industrial robot virtual operations,an industrial robot shaft hole assembly system is developed.This system enables virtual assembly operations,displays physical attributes,and provides valuable references for the research of virtual systems.展开更多
Despite the gradual transformation of traditional manufacturing by the Human-Robot Collaboration Assembly(HRCA),challenges remain in the robot’s ability to understand and predict human assembly intentions.This study ...Despite the gradual transformation of traditional manufacturing by the Human-Robot Collaboration Assembly(HRCA),challenges remain in the robot’s ability to understand and predict human assembly intentions.This study aims to enhance the robot’s comprehension and prediction capabilities of operator assembly intentions by capturing and analyzing operator behavior and movements.We propose a video feature extraction method based on the Temporal Shift Module Network(TSM-ResNet50)to extract spatiotemporal features from assembly videos and differentiate various assembly actions using feature differences between video frames.Furthermore,we construct an action recognition and segmentation model based on the Refined-Multi-Scale Temporal Convolutional Network(Refined-MS-TCN)to identify assembly action intervals and accurately acquire action categories.Experiments on our self-built reducer assembly action dataset demonstrate that our network can classify assembly actions frame by frame,achieving an accuracy rate of 83%.Additionally,we develop a HiddenMarkovModel(HMM)integrated with assembly task constraints to predict operator assembly intentions based on the probability transition matrix and assembly task constraints.The experimental results show that our method for predicting operator assembly intentions can achieve an accuracy of 90.6%,which is a 13.3%improvement over the HMM without task constraints.展开更多
Challenges still remain in carrying out assembly modeling efficiently in virtual assembly （VA） fields. One of the root causes is the apparent weakness in effective description of assembly knowledge and information. ...Challenges still remain in carrying out assembly modeling efficiently in virtual assembly （VA） fields. One of the root causes is the apparent weakness in effective description of assembly knowledge and information. The assembly modeling, disassembly modeling, assembly interference inspection, assembly sequence planning and optimization, and assembly simulation display for key techniques is studied theoretically in this paper. An example of product assembly modeling is provided to illustrate the effectiveness of the proposed approach. On the basis of re- search, using assembly simulation techniques and multimedia techniques to finish structure design in linkage design of a large size wind-drive generator. The application of the modeling method has shortened the lead time dramatically.展开更多
Membrane electrode assembly(MEA)is widely considered to be the most promising type of electrolyzer for the practical application of electrochemical CO_(2) reduction reaction(CO_(2)RR).In MEAs,a square-shaped cross-sec...Membrane electrode assembly(MEA)is widely considered to be the most promising type of electrolyzer for the practical application of electrochemical CO_(2) reduction reaction(CO_(2)RR).In MEAs,a square-shaped cross-section in the flow channel is normally adopted,the configuration optimization of which could potentially enhance the performance of the electrolyzer.This paper describes the numerical simulation study on the impact of the flow-channel cross-section shapes in the MEA electrolyzer for CO_(2)RR.The results show that wide flow channels with low heights are beneficial to the CO_(2)RR by providing a uniform flow field of CO_(2),especially at high current densities.Moreover,the larger the electrolyzer,the more significant the effect is.This study provides a theoretical basis for the design of high-performance MEA electrolyzers for CO_(2)RR.展开更多
Juglans sigillata is an economically valuable nut crop renowned for its nutritional richness,including essential nutrients,antioxidants,and healthy fats,which boost human cardial,brain and gut health.Despite its impor...Juglans sigillata is an economically valuable nut crop renowned for its nutritional richness,including essential nutrients,antioxidants,and healthy fats,which boost human cardial,brain and gut health.Despite its importance,the lack of a complete genome assembly has been a stumbling block in its biological breeding process.Therefore,we generated deep coverage ultralong Oxford Nanopore Technology(ONT)and PacBio HiFi reads to construct a telomere-to-telomere(T2T)genome assembly.The final assembly spans 537.27 Mb with no gaps,demonstrating a remarkable completeness of 98.1%.We utilized a combination of transcriptome data and homologous proteins to annotate the genome,identifying 36018 protein-coding genes.Furthermore,we profiled global cytosine DNA methylations using ONT sequencing data.Global methylome analysis revealed high methylation levels in transposable element(TE)-rich chromosomal regions juxtaposed with comparatively lower methylation in gene-rich areas.By integrating a detailed multi-omics data analysis,we obtained valuable insights into the mechanism underlying endopleura coloration.This investigation led to the identification of eight candidate genes(e.g.ANR)involved in anthocyanin biosynthesis pathways,which are crucial for the development of color in plants.The comprehensive genome assembly and the understanding of the genetic basis of important traits like endopleura coloration will open avenues for more efficient breeding programs and improved crop quality.展开更多
The application of photocatalytic technology in algae killing is limited by the non-floatability and difficulty in recycling of the photocatalysts.Loading photocatalyst on magnetic or floatable carriers is the most po...The application of photocatalytic technology in algae killing is limited by the non-floatability and difficulty in recycling of the photocatalysts.Loading photocatalyst on magnetic or floatable carriers is the most popular method for overcoming the above inadequacies.In this work,a CdZnS/TiO_(2) membrane photocatalyst with adjustable suspended depth(include floating)and flexible assembly is designed,which is less prone to dislodgement due to in situ synthesis and has a wider range of applicability than previously reported photocatalysts.The photocatalytic removal of Microcystis aeruginosa revealed that the suspended depth and distribution format of the CdZnS/TiO_(2) membrane photocatalysts have striking effects on the photocatalytic removal performance of Microcystis aeruginosa,the photocatalytic removal efficiency of CdZnS/TiO_(2)-2 membrane photocatalysts for Microcystis aeruginosa could reach to 98.6%in 60 min when the photocatalysts assembled in the form of 3×3 arrays suspended at a depth of 2 cm from the liquid surface.A tiny amount of TiO_(2) loading allows the formation of Z-Scheme heterojunction,resulting in accelerating the separation efficiency of photogenerated carriers,preserving the photogenerated electrons and holes with stronger reduction and oxidation ability and inhabiting the photo-corrosion of CdZnS.展开更多
A unitized regenerative fuel cell(URFC)is a device that may function reversibly as either a fuel cell(FC)or water elec-trolysis(WE).An important component of this device is the Membrane electrode assembly(MEA).Therefo...A unitized regenerative fuel cell(URFC)is a device that may function reversibly as either a fuel cell(FC)or water elec-trolysis(WE).An important component of this device is the Membrane electrode assembly(MEA).Therefore,this study aimed to compare the performance outcomes of MEA using electrodes with single and three catalyst layers.This study measured Electrochemical Surface Area(ECSA),Electrochemical Impedance Spectroscopy(EIS),X-ray Diffraction analysis(XRD),and X-ray Fluorescence(XRF).Furthermore,the round-trip efficiency(RTE)of the MEA,as w ell as the performance in FC and WE mode,was measured.In comparison,The ECSA values of Pt-Ru/C and Pt/C with three catalyst layers were higher than the single catalyst layer.This result was supported by electrode characterization data for XRD and XRF.The respective electrical conductivity values of Pt-Ru/C and Pt/C with three catalyst layers are also higher than the single cata-lyst layer,and the performance of URFC using MEA with three catalyst layers has the highest value of RTE among the MEA performances of URFC,which is 100%at a current density of 4 mA·cm-2.展开更多
Soil microbiomes are significant for biodiversity,crucial for ecosystem functions,and vital for the health of various organisms.Nevertheless,the impacts of season and plant species shifts on soil microbial diversity a...Soil microbiomes are significant for biodiversity,crucial for ecosystem functions,and vital for the health of various organisms.Nevertheless,the impacts of season and plant species shifts on soil microbial diversity and community assembly are still poorly understood.This study explored soil bacterial,fungal,and protistan communities during summer and winter in a coastal wetland affected by Spartina alterniflora invasion and subsequent Cyperus malaccensis or Kandelia obovata restoration.The results showed that bacterial,fungal,and protistan diversity were 2.63%,40.3%,and 9.90%higher in winter than in summer,respectively.Plant species had a distinct impact on microbial diversity.Notably,K.obovata restoration significantly increased bacterial diversity,but decreased protistan diversity,with no effect on fungal diversity when compared to S.alterniflora invasion.Season and plant species both significantly influenced the community structure of bacteria,fungi,and protists.However,protistan community structure was more sensitive to season compared to the structure of bacterial and fungal communities.The complexity of co-occurrence networks within or among bacteria,fungi,and protists was higher in winter than in summer.Bacterial and protistan community assembly was primarily driven by stochastic processes,while fungal assembly was dominated by deterministic processes.Bacterial and protistan community assembly exhibited lower stochasticity in winter compared to summer,suggesting a more deterministic assembly of communities during winter.Our findings highlight the critical role of season and plant species in regulating microbial communities,revealing higher microbial diversity,network complexity,and determinism in community assembly during winter compared to summer in a subtropical coastal wetland.展开更多
Molecular recognition of fullerene using various host compounds is well-known in literature.But most studies focus on host-vip complexation in solution using host compounds with a single binding cavity.Herein,we rep...Molecular recognition of fullerene using various host compounds is well-known in literature.But most studies focus on host-vip complexation in solution using host compounds with a single binding cavity.Herein,we report a series of highly preorganized janusarene derivatives with homoditopic binding sites.These novel janusarenes can bind and align various fullerenes such as C_(60),C_(70),C_(84),and Gd@C_(82)in a highly efficient manner.Robust shape complementary association and assembly are observed in solution,in the bulk solid state,in the liquid crystalline state,or on surface,and the assembled structures are characterized by nuclear magnetic resonance(NMR)titration,X-ray diffraction,polarized optical microscopy,and scanning tunneling microscopy.展开更多
Common bean(Phaseolus vulgaris L.)is a vital source of protein and essential nutrients for human consumption and plays a key role in sustainable agriculture due to its nitrogen-fixing ability(Nadeem et al.,2021).Kidne...Common bean(Phaseolus vulgaris L.)is a vital source of protein and essential nutrients for human consumption and plays a key role in sustainable agriculture due to its nitrogen-fixing ability(Nadeem et al.,2021).Kidney beans,a subcategory of dry common beans,are highly valued for their rich protein,dietary fiber,low fat content,and various trace elements(Garcia-Cordero et al.,2021).Despite the release of several de novo genome assemblies(Goodstein et al.,2012;Schmutz et al.,2014;Vlasova et al.,2016;Cortinovis et al.,2024),existing common bean genomes remain incomplete,particularly in complex regions such as centromeres and telomeres,limiting a comprehensive understanding of the genomic landscape.展开更多
Intestinal drug-resistant pathogens,e.g.,Salmonella enterica subsp.enterica serovar Typhimurium(S.Tm)and enteropathogenic Escherichia coli(E.coli),frequently cause life-threatening infectious enteritis.Probiotic-based...Intestinal drug-resistant pathogens,e.g.,Salmonella enterica subsp.enterica serovar Typhimurium(S.Tm)and enteropathogenic Escherichia coli(E.coli),frequently cause life-threatening infectious enteritis.Probiotic-based therapy is a promising way to eliminate drug-resistant pathogens for treatment of infectious enteritis,but its colonizing and therapeutic efficacy after oral administration are limited.Here,we developed a facile therapeutic agent to treat infectious enteritis by co-assembly of the peptide nanodrug melittin-loaded MSN grafted by polysaccharide-binding protein(MMPB)with the famous probiotic bacteria Lactobacillus plantarum(Lac)and Bifidobacterium animalis subsp.lactis(Bif).The nanodrug was composed of the antimicrobial peptide melittin and mesoporous silica nanoparticles exposing the artificial polysaccharide-binding protein.Owing to presence of the artificial protein on the MMPB surface,the nanodrug strongly bound and cross-linked the probiotic cells,forming the Lac+Bif+MMPB co-assembly.During co-incubation with the kanamycin-resistant E.coli strain(Ecka),the co-assembly strongly reduced the viability of Ecka,leading to the increase in the ratio of probiotic to Ecka from 1.6 to 9.2.After oral administration of the co-assembly to themice pre-colonized by Ecka,Lac+Bif+MMPB almost eliminated the kanamycin-resistant gene in the intestine,and led to 2-3-fold higher levels of the probiotic cells than the nanodrug MMPB or the combined probiotics Lac+Bif.More importantly,in the mice suffering from enteritis caused by drug-resistant S.Tm,the co-assembly remarkably recovered the mouse body weight,reduced intestine colonization of S.Tm cells,and decreased the levels of pro-inflammatory cytokines in both serum and colons.This study realized the synthetic biology technique-mediated abiotic/biotic co-assembly for efficient treating infectious enteritis induced by drug-resistant pathogens.展开更多
Carbon dots(CDs)-based composites have shown impressive performance in fields of information encryption and sensing,however,a great challenge is to simultaneously implement multi-mode luminescence and room-temperature...Carbon dots(CDs)-based composites have shown impressive performance in fields of information encryption and sensing,however,a great challenge is to simultaneously implement multi-mode luminescence and room-temperature phosphorescence(RTP)detection in single system due to the formidable synthesis.Herein,a multifunctional composite of Eu&CDs@p RHO has been designed by co-assembly strategy and prepared via a facile calcination and impregnation treatment.Eu&CDs@p RHO exhibits intense fluorescence(FL)and RTP coming from two individual luminous centers,Eu3+in the free pores and CDs in the interrupted structure of RHO zeolite.Unique four-mode color outputs including pink(Eu^(3+),ex.254 nm),light violet(CDs,ex.365 nm),blue(CDs,254 nm off),and green(CDs,365 nm off)could be realized,on the basis of it,a preliminary application of advanced information encoding has been demonstrated.Given the free pores of matrix and stable RTP in water of confined CDs,a visual RTP detection of Fe^(3+)ions is achieved with the detection limit as low as 9.8μmol/L.This work has opened up a new perspective for the strategic amalgamation of luminous vips with porous zeolite to construct the advanced functional materials.展开更多
phoD and pqqC gene occurrence in bacteria allows them to mobilize phosphorus(P)by mineralizing organic P(Po)and solubilizing inorganic P(Pi),respectively.Community characteristics of phoD-and pqqC-harboring bacteria(p...phoD and pqqC gene occurrence in bacteria allows them to mobilize phosphorus(P)by mineralizing organic P(Po)and solubilizing inorganic P(Pi),respectively.Community characteristics of phoD-and pqqC-harboring bacteria(phoD-and pqqC-HB,respectively)mediate P cycling.However,whether the microbial community assembly and keystone taxa of phoD-and pqqC-HB regulate P availability and distinct regulatory pathways between these two genes remain unclear.In this study,soil microbial community characteristics and P availability were investigated in four long-term(38-year)fertilization regimes:control with no fertilizer(CK),P fertilizer(PF),nitrogen(N)and P fertilizers(NP),and N fertilizer,P fertilizer,and manure(NPM).The N addition treatments(NP and NPM)significantly changed the community composition and increased the abundances of phoD-and pqqC-HB compared to the no-N addition treatments(CK and PF).Stochastic processes dominated the community assembly of both phoD-and pqqC-HB,and the relative contributions of stochasticity increased with N addition.Furthermore,the N addition treatments resulted in greater network complexity and higher abundances of keystone taxa of phoD-and pqqC-HB compared to those of the no-N addition treatments.The keystone taxa implicated in P cycling were also associated with carbon(C)and N cycling processes.Microbial community composition and assembly processes were the main factors driving labile Pi for phoD-HB,whereas keystone taxa contributed the most to labile Pi for pqqC-HB.These results emphasize that distinct mechanisms of phoD-and pqqC-HB regulate P availability under fertilization management and underline the significance of microbial community assembly and keystone taxa in soil ecological functions,offering fresh perspectives on comprehending the biological processes facilitated by microorganisms in enhancing soil quality.展开更多
A renewable fluorescent material(GСCP5L)has been constructed via supramolecular assembly between a new derivative of pillararene,namely leggero pillar[5]arene,as the host molecule(CP5L)and a tetraphenylethylene(TPE)-...A renewable fluorescent material(GСCP5L)has been constructed via supramolecular assembly between a new derivative of pillararene,namely leggero pillar[5]arene,as the host molecule(CP5L)and a tetraphenylethylene(TPE)-based ditopic vip(G).This new material can simultaneously perform efficient detection and separation of silver(I)from aqueous environments.Possessing an electron-rich cavity and two cytosine groups modified on both rims,CP5L functions as the host-vip binding site for G and offers exclusive coordination sites for further interaction with Ag+.Adding Ag+to the system undergoes dramatic fluorescence enhancement due to the mechanism of supramolecular assembly-induced enhanced emission(SAIEE).This fluorescence enhancement allows for efficient and visualized detection following a“light-up”pattern,achieving a limit of detection(LOD)of 1.3×10^(-7)mol/L,which is fully in line with the World Health Organization's drinking water standard of 9×10^(-7)mol/L.In addition,GСCP5L also shows strong anti-interference capability against other cationic species.For the separation of Ag+from aqueous systems,GСCP5L displays exceptional adsorption efficiency(97%)and reliable recovery performance,demonstrating excellent recyclability after five experimental cycles without compromising its adsorption activity.展开更多
Bacterial communities play a crucial role in permafrost biogeochemical cycling and ecosystem function maintenance.Bacterial interaction is one of the main factors in shaping soil bacterial communities.However,how woul...Bacterial communities play a crucial role in permafrost biogeochemical cycling and ecosystem function maintenance.Bacterial interaction is one of the main factors in shaping soil bacterial communities.However,how would bacterial interaction influence the bacterial communities in permafrost of the Qinghai-Tibet Plateau(QTP)remains largely unknown.Here we collected paired soil samples from both the active and permafrost layers of two typical QTP permafrost regions in October 2020 for Tuotuohe River(TTH)and May 2022 for Aerjin(ARJ),and investigated the bacterial communities and the role of interactions in structuring the bacterial community and its assembly process through amplicon sequencing of the 16S rRNA gene.Our study revealed distinct bacterial communities,with significant differences in the relative abundances of Proteobacteria(P<0.05),Acidobacteriota(P<0.001),Bacteroidota(P<0.05),and Planctomycetota(P<0.001)between the active layer and the permafrost layer.More importantly,we found that interspecies interactions,including both positive and negative associations,were strongly correlated with bacterial alpha-diversity and played a significant role in community variation and assembly process.Our findings also showed that the community assembly in both the active and permafrost layers was primarily driven by homogeneous selection of deterministic processes,with interspecies interactions accounting for more than 58%and 63%of all assembly mechanisms,respectively.This is the first study to quantify the contribution of bacterial interactions in shaping the bacterial community and its assembly process in permafrost of QTP,highlighting the importance of considering interspecies interactions in future modeling efforts.Our work also emphasizes the necessity of including interspecies interactions in microbial process projections to reduce uncertainty.展开更多
The environmental impacts of acid mine drainage(AMD)from open-pit mining are profoundly detrimental,yet knowledge about its effects on paddy soil microbial communities,especially at greater depths,remains limited.In t...The environmental impacts of acid mine drainage(AMD)from open-pit mining are profoundly detrimental,yet knowledge about its effects on paddy soil microbial communities,especially at greater depths,remains limited.In this investigation,we compared soils affected by AMD versus unaffected soil depth profiles in terms of bacterial diversity and community assembly.The profiles in AMD-polluted soils exhibited tight geochemical gradients,characterized by increased acidity,SO_(4)^(2-),NO_(3)^(-),and heavy metal content compared to unpolluted soils.Notably,AMD significantly diminished soil bacterial biodiversity.A depthwise analysis showed distinct microbial stratification,with certain bacteria like Candidatus_Solibacter and Candidatus_Koribacter predominated in polluted soils,while others like Haliangium and Nitrospira were more prevalent in control soils.Interestingly,despite variable soil conditions,predictedmetabolic pathways,particularly those involving carbon,nitrogen,and sulfur,showed relative stability.AMD pollution induced the upregulation of methylcoenzyme M reductase and sulfate reductase genes.Bacterial communities were more responsive to pH and nutrient content rather than heavy metals,with pH and SO_(4)^(2-)being the primary drivers of microbial diversity and distribution.Additionally,pHwas identified as the most significant influence on the predicted methane,sulfur,and nitrogen metabolism.Furthermore,deterministic processes played a more significant role in community assembly of polluted soils,while heterogeneous selection gained importance with increasing depth in control soils.Additionally,microbial co-occurrences,particularly positive interactions,were more prevalent in the polluted soils with reduced network modularity and keystone taxa.These findings offer insights into sustaining microbial diversity in extreme environments.展开更多
基金supported by the National Key Research and Development Project Program of China(2022YFC3400300,2019YFE0109600)the China Postdoctoral Science Foundation(2021M701584).
文摘With the rapid development of sequencing technologies,especially the maturity of third-generation sequencing technologies,there has been a significant increase in the number and quality of published genome assemblies.The emergence of these high-quality genomes has raised higher requirements for genome evaluation.Although numerous computational methods have been developed to evaluate assembly quality from various perspectives,the selective use of these evaluation methods can be arbitrary and inconvenient for fairly comparing the assembly quality.To address this issue,we have developed the Genome Assembly Evaluating Pipeline(GAEP),which provides a comprehensive assessment pipeline for evaluating genome quality from multiple perspectives,including continuity,completeness,and correctness.Additionally,GAEP includes new functions for detecting misassemblies and evaluating the assembly redundancy,which performs well in our testing.GAEP is publicly available at https://github.com/zyoptimistic/GAEP under the GPL3.0 License.With GAEP,users can quickly obtain accurate and reliable evaluation results,facilitating the comparison and selection of high-quality genome assemblies.
基金Supported by National Key Research and Development Program of China(Grant No.2022YFB3304200)National Natural Science Foundation of China(Grant No.52205288)+1 种基金China Postdoctoral Science Foundation(Grant Nos.2024T170795,2024M762815)Zhejiang Provincial Key Research and Development Program(Grant No.2024C01029)。
文摘Assembly precision greatly influences the performance of complex high-end equipment.The traditional industrial assembly process and deviation transfer are implicit and uncertain,causing problems like poor component fit and hard-to-trace assembly stress concentration.Assemblers can only check whether the dimensional tolerance of the component design is exceeded step by step in combination with prior knowledge.Inversion in industrial assembly optimizes assembly and design by comparing real and theoretical results and doing inversion analysis to reduce assembly deviation.The digital twin(DT)technology visualizes and predicts the assembly process by mapping real and virtual model parameters and states simultaneously,expanding parameter range for inversion analysis and improving inversion result accuracy.Problems in improving industrial assembly precision and the significance and research status of DT-driven parametric inversion of assembly tools,processes and object precision are summarized.It analyzes vital technologies for assembly precision inversion such as multi-attribute assembly process parameter sensing,virtual modeling of high-fidelity assembly systems,twin synchronization of assembly process data models,multi-physical field simulation,and performance twin model construction of the assembly process.Combined with human-cyber-physical system,augmented reality,and generative intelligence,the outlook of DT-driven assembly precision inversion is proposed,providing support for DT's use in industrial assembly and precision improvement.
基金Supported by National Natural Science Foundation of China(Grant Nos.52475509 and U22A20203)Beijing Municipal Natural Science Foundation(Grant No.L248005)Hebei Provincial Natural Science Foundation(Grant No.E2023105059)。
文摘As the demands for assembly quality and efficiency increase,robot-assisted assembly applications are becoming more widespread.Peg-in-hole assembly,as a typical form of assembly,has been widely researched by scholars.Currently,robotic peg-in-hole assembly faces challenges such as complex analysis of part contact forces,difficulties in task modeling,and the failure of traditional strategies.Simply controlling the position of the robot's end effector cannot achieve high precision,high efficiency peg-in-hole assembly.Flexible assembly,especially intelligent flexible assembly,is becoming the future development trend.So there is a lack of comprehensive reviews on robotic flexible peg-in-hole assembly.This paper first outlines the basic components of peg-in-hole assembly and summarizes the two basic operational processes of peg-in-hole assembly,along with their related theoretical foundations.We then review and analyze the research on passive compliant assembly,active compliant assembly,and intelligent flexible assembly.Finally,it presents an outlook on the future development directions of robotic peg-in-hole assembly.
基金Sponsored by the National Natural Science Foundation of China(Grant No.52005003)the Science and Technology Planning Project of Wuhu City(Grant No.2022jc41)。
文摘To address the challenges of insufficient visualization in the industrial robot assembly operation system and the limitation of visualizing only geometric attributes of physical properties,a method is proposed for constructing an industrial robot assembly system based on virtual reality technology.Focusing on the shaft hole assembly,the mechanical characteristics of the industrial robot shaft hole assembly process are analyzed and a dynamic model is established for shaft hole assembly operations.The key elements of virtual assembly operations for industrial robots are summarized and a five-dimensional model is proposed for industrial robot virtual operations.Utilizing the Unity3D engine based on the 5-D model for industrial robot virtual operations,an industrial robot shaft hole assembly system is developed.This system enables virtual assembly operations,displays physical attributes,and provides valuable references for the research of virtual systems.
文摘Despite the gradual transformation of traditional manufacturing by the Human-Robot Collaboration Assembly(HRCA),challenges remain in the robot’s ability to understand and predict human assembly intentions.This study aims to enhance the robot’s comprehension and prediction capabilities of operator assembly intentions by capturing and analyzing operator behavior and movements.We propose a video feature extraction method based on the Temporal Shift Module Network(TSM-ResNet50)to extract spatiotemporal features from assembly videos and differentiate various assembly actions using feature differences between video frames.Furthermore,we construct an action recognition and segmentation model based on the Refined-Multi-Scale Temporal Convolutional Network(Refined-MS-TCN)to identify assembly action intervals and accurately acquire action categories.Experiments on our self-built reducer assembly action dataset demonstrate that our network can classify assembly actions frame by frame,achieving an accuracy rate of 83%.Additionally,we develop a HiddenMarkovModel(HMM)integrated with assembly task constraints to predict operator assembly intentions based on the probability transition matrix and assembly task constraints.The experimental results show that our method for predicting operator assembly intentions can achieve an accuracy of 90.6%,which is a 13.3%improvement over the HMM without task constraints.
基金supported by the Foundation of Jiangsu Province for Talented Personnel and the Self-determined Research Program of Jiangnan University
文摘Challenges still remain in carrying out assembly modeling efficiently in virtual assembly （VA） fields. One of the root causes is the apparent weakness in effective description of assembly knowledge and information. The assembly modeling, disassembly modeling, assembly interference inspection, assembly sequence planning and optimization, and assembly simulation display for key techniques is studied theoretically in this paper. An example of product assembly modeling is provided to illustrate the effectiveness of the proposed approach. On the basis of re- search, using assembly simulation techniques and multimedia techniques to finish structure design in linkage design of a large size wind-drive generator. The application of the modeling method has shortened the lead time dramatically.
基金the National Key R&D Program of China(No.2021YFA1501503)the National Natural Science Foundation of China(Nos.22250008,22121004,22108197)+3 种基金the Haihe Laboratory of Sustainable Chemical Transformations(No.CYZC202107)the Natural Science Foundation of Tianjin City(No.21JCZXJC00060)the Program of Introducing Talents of Discipline to Universities(No.BP0618007)the Xplorer Prize for financial support。
文摘Membrane electrode assembly(MEA)is widely considered to be the most promising type of electrolyzer for the practical application of electrochemical CO_(2) reduction reaction(CO_(2)RR).In MEAs,a square-shaped cross-section in the flow channel is normally adopted,the configuration optimization of which could potentially enhance the performance of the electrolyzer.This paper describes the numerical simulation study on the impact of the flow-channel cross-section shapes in the MEA electrolyzer for CO_(2)RR.The results show that wide flow channels with low heights are beneficial to the CO_(2)RR by providing a uniform flow field of CO_(2),especially at high current densities.Moreover,the larger the electrolyzer,the more significant the effect is.This study provides a theoretical basis for the design of high-performance MEA electrolyzers for CO_(2)RR.
基金supported by the Yunnan Seed Laboratory,China(202205AR070001-15)the National Natural Science Foundation of China,China(Grant No.32160697)。
文摘Juglans sigillata is an economically valuable nut crop renowned for its nutritional richness,including essential nutrients,antioxidants,and healthy fats,which boost human cardial,brain and gut health.Despite its importance,the lack of a complete genome assembly has been a stumbling block in its biological breeding process.Therefore,we generated deep coverage ultralong Oxford Nanopore Technology(ONT)and PacBio HiFi reads to construct a telomere-to-telomere(T2T)genome assembly.The final assembly spans 537.27 Mb with no gaps,demonstrating a remarkable completeness of 98.1%.We utilized a combination of transcriptome data and homologous proteins to annotate the genome,identifying 36018 protein-coding genes.Furthermore,we profiled global cytosine DNA methylations using ONT sequencing data.Global methylome analysis revealed high methylation levels in transposable element(TE)-rich chromosomal regions juxtaposed with comparatively lower methylation in gene-rich areas.By integrating a detailed multi-omics data analysis,we obtained valuable insights into the mechanism underlying endopleura coloration.This investigation led to the identification of eight candidate genes(e.g.ANR)involved in anthocyanin biosynthesis pathways,which are crucial for the development of color in plants.The comprehensive genome assembly and the understanding of the genetic basis of important traits like endopleura coloration will open avenues for more efficient breeding programs and improved crop quality.
基金financially supported by the Natural Science Foundation of ShanDong(Nos.ZR2023QD152 and ZR2021MD002).
文摘The application of photocatalytic technology in algae killing is limited by the non-floatability and difficulty in recycling of the photocatalysts.Loading photocatalyst on magnetic or floatable carriers is the most popular method for overcoming the above inadequacies.In this work,a CdZnS/TiO_(2) membrane photocatalyst with adjustable suspended depth(include floating)and flexible assembly is designed,which is less prone to dislodgement due to in situ synthesis and has a wider range of applicability than previously reported photocatalysts.The photocatalytic removal of Microcystis aeruginosa revealed that the suspended depth and distribution format of the CdZnS/TiO_(2) membrane photocatalysts have striking effects on the photocatalytic removal performance of Microcystis aeruginosa,the photocatalytic removal efficiency of CdZnS/TiO_(2)-2 membrane photocatalysts for Microcystis aeruginosa could reach to 98.6%in 60 min when the photocatalysts assembled in the form of 3×3 arrays suspended at a depth of 2 cm from the liquid surface.A tiny amount of TiO_(2) loading allows the formation of Z-Scheme heterojunction,resulting in accelerating the separation efficiency of photogenerated carriers,preserving the photogenerated electrons and holes with stronger reduction and oxidation ability and inhabiting the photo-corrosion of CdZnS.
基金support from the Ministry of Higher Education Malaysia under grant HICOE-2023-005.
文摘A unitized regenerative fuel cell(URFC)is a device that may function reversibly as either a fuel cell(FC)or water elec-trolysis(WE).An important component of this device is the Membrane electrode assembly(MEA).Therefore,this study aimed to compare the performance outcomes of MEA using electrodes with single and three catalyst layers.This study measured Electrochemical Surface Area(ECSA),Electrochemical Impedance Spectroscopy(EIS),X-ray Diffraction analysis(XRD),and X-ray Fluorescence(XRF).Furthermore,the round-trip efficiency(RTE)of the MEA,as w ell as the performance in FC and WE mode,was measured.In comparison,The ECSA values of Pt-Ru/C and Pt/C with three catalyst layers were higher than the single catalyst layer.This result was supported by electrode characterization data for XRD and XRF.The respective electrical conductivity values of Pt-Ru/C and Pt/C with three catalyst layers are also higher than the single cata-lyst layer,and the performance of URFC using MEA with three catalyst layers has the highest value of RTE among the MEA performances of URFC,which is 100%at a current density of 4 mA·cm-2.
基金supported by the Natural Resources Science and Technology Innovation Project of Fujian Province,China(No.KY-090000-04-2022-012)the National Natural Science Foundation of China(Nos.42077041 and 42377301)+1 种基金the National Natural Science Foundation of Fujian Province,China(No.2021J011038)the Talent Introduction Program of Minjiang University,China(No.MJY20012).
文摘Soil microbiomes are significant for biodiversity,crucial for ecosystem functions,and vital for the health of various organisms.Nevertheless,the impacts of season and plant species shifts on soil microbial diversity and community assembly are still poorly understood.This study explored soil bacterial,fungal,and protistan communities during summer and winter in a coastal wetland affected by Spartina alterniflora invasion and subsequent Cyperus malaccensis or Kandelia obovata restoration.The results showed that bacterial,fungal,and protistan diversity were 2.63%,40.3%,and 9.90%higher in winter than in summer,respectively.Plant species had a distinct impact on microbial diversity.Notably,K.obovata restoration significantly increased bacterial diversity,but decreased protistan diversity,with no effect on fungal diversity when compared to S.alterniflora invasion.Season and plant species both significantly influenced the community structure of bacteria,fungi,and protists.However,protistan community structure was more sensitive to season compared to the structure of bacterial and fungal communities.The complexity of co-occurrence networks within or among bacteria,fungi,and protists was higher in winter than in summer.Bacterial and protistan community assembly was primarily driven by stochastic processes,while fungal assembly was dominated by deterministic processes.Bacterial and protistan community assembly exhibited lower stochasticity in winter compared to summer,suggesting a more deterministic assembly of communities during winter.Our findings highlight the critical role of season and plant species in regulating microbial communities,revealing higher microbial diversity,network complexity,and determinism in community assembly during winter compared to summer in a subtropical coastal wetland.
基金supported by the National Natural Science Foundation of China(Nos.22325111,2220312,21871298,91956118)Guangdong Basic Research Center of Excellence for Functional Molecular Engineeringthe Sun Yat-sen University。
文摘Molecular recognition of fullerene using various host compounds is well-known in literature.But most studies focus on host-vip complexation in solution using host compounds with a single binding cavity.Herein,we report a series of highly preorganized janusarene derivatives with homoditopic binding sites.These novel janusarenes can bind and align various fullerenes such as C_(60),C_(70),C_(84),and Gd@C_(82)in a highly efficient manner.Robust shape complementary association and assembly are observed in solution,in the bulk solid state,in the liquid crystalline state,or on surface,and the assembled structures are characterized by nuclear magnetic resonance(NMR)titration,X-ray diffraction,polarized optical microscopy,and scanning tunneling microscopy.
基金supported by the National Natural Science Foundation of China(32241045,32241046,32241038)the Major Special Science and Technology Projects in Shanxi Province(202101140601027)+3 种基金Shanxi Provincial Agricultural Key Technologies Breakthrough Project(NYGG01)Doctoral Research Starting Project at Shanxi Agricultural University(2024BQ77)the National Key Research and Development Program of China(2023YFD1202705/2023YFD120270503,2023YFD1202703/2023YFD1202703-4)Shanxi HouJi Laboratory Self-proposed Research Project(202304010930003/202304010930003-03).
文摘Common bean(Phaseolus vulgaris L.)is a vital source of protein and essential nutrients for human consumption and plays a key role in sustainable agriculture due to its nitrogen-fixing ability(Nadeem et al.,2021).Kidney beans,a subcategory of dry common beans,are highly valued for their rich protein,dietary fiber,low fat content,and various trace elements(Garcia-Cordero et al.,2021).Despite the release of several de novo genome assemblies(Goodstein et al.,2012;Schmutz et al.,2014;Vlasova et al.,2016;Cortinovis et al.,2024),existing common bean genomes remain incomplete,particularly in complex regions such as centromeres and telomeres,limiting a comprehensive understanding of the genomic landscape.
基金supported by National Natural Science Foundation of China(32170102)Natural Science Foundation of Tianjin(25JCLMJC00400)the Fundamental Research Funds for the Central Universities(63253191).
文摘Intestinal drug-resistant pathogens,e.g.,Salmonella enterica subsp.enterica serovar Typhimurium(S.Tm)and enteropathogenic Escherichia coli(E.coli),frequently cause life-threatening infectious enteritis.Probiotic-based therapy is a promising way to eliminate drug-resistant pathogens for treatment of infectious enteritis,but its colonizing and therapeutic efficacy after oral administration are limited.Here,we developed a facile therapeutic agent to treat infectious enteritis by co-assembly of the peptide nanodrug melittin-loaded MSN grafted by polysaccharide-binding protein(MMPB)with the famous probiotic bacteria Lactobacillus plantarum(Lac)and Bifidobacterium animalis subsp.lactis(Bif).The nanodrug was composed of the antimicrobial peptide melittin and mesoporous silica nanoparticles exposing the artificial polysaccharide-binding protein.Owing to presence of the artificial protein on the MMPB surface,the nanodrug strongly bound and cross-linked the probiotic cells,forming the Lac+Bif+MMPB co-assembly.During co-incubation with the kanamycin-resistant E.coli strain(Ecka),the co-assembly strongly reduced the viability of Ecka,leading to the increase in the ratio of probiotic to Ecka from 1.6 to 9.2.After oral administration of the co-assembly to themice pre-colonized by Ecka,Lac+Bif+MMPB almost eliminated the kanamycin-resistant gene in the intestine,and led to 2-3-fold higher levels of the probiotic cells than the nanodrug MMPB or the combined probiotics Lac+Bif.More importantly,in the mice suffering from enteritis caused by drug-resistant S.Tm,the co-assembly remarkably recovered the mouse body weight,reduced intestine colonization of S.Tm cells,and decreased the levels of pro-inflammatory cytokines in both serum and colons.This study realized the synthetic biology technique-mediated abiotic/biotic co-assembly for efficient treating infectious enteritis induced by drug-resistant pathogens.
基金supported by the National Natural Science Foundation of China(No.22288101)the 111 Project(No.B17020)。
文摘Carbon dots(CDs)-based composites have shown impressive performance in fields of information encryption and sensing,however,a great challenge is to simultaneously implement multi-mode luminescence and room-temperature phosphorescence(RTP)detection in single system due to the formidable synthesis.Herein,a multifunctional composite of Eu&CDs@p RHO has been designed by co-assembly strategy and prepared via a facile calcination and impregnation treatment.Eu&CDs@p RHO exhibits intense fluorescence(FL)and RTP coming from two individual luminous centers,Eu3+in the free pores and CDs in the interrupted structure of RHO zeolite.Unique four-mode color outputs including pink(Eu^(3+),ex.254 nm),light violet(CDs,ex.365 nm),blue(CDs,254 nm off),and green(CDs,365 nm off)could be realized,on the basis of it,a preliminary application of advanced information encoding has been demonstrated.Given the free pores of matrix and stable RTP in water of confined CDs,a visual RTP detection of Fe^(3+)ions is achieved with the detection limit as low as 9.8μmol/L.This work has opened up a new perspective for the strategic amalgamation of luminous vips with porous zeolite to construct the advanced functional materials.
基金supported by the National Key Research and Development Program of China(No.2022YFD 1901601)the National Natural Science Foundation of China(No.42107360)the Fundamental Research Funds for the Central Universities,China(No.2452021032).
文摘phoD and pqqC gene occurrence in bacteria allows them to mobilize phosphorus(P)by mineralizing organic P(Po)and solubilizing inorganic P(Pi),respectively.Community characteristics of phoD-and pqqC-harboring bacteria(phoD-and pqqC-HB,respectively)mediate P cycling.However,whether the microbial community assembly and keystone taxa of phoD-and pqqC-HB regulate P availability and distinct regulatory pathways between these two genes remain unclear.In this study,soil microbial community characteristics and P availability were investigated in four long-term(38-year)fertilization regimes:control with no fertilizer(CK),P fertilizer(PF),nitrogen(N)and P fertilizers(NP),and N fertilizer,P fertilizer,and manure(NPM).The N addition treatments(NP and NPM)significantly changed the community composition and increased the abundances of phoD-and pqqC-HB compared to the no-N addition treatments(CK and PF).Stochastic processes dominated the community assembly of both phoD-and pqqC-HB,and the relative contributions of stochasticity increased with N addition.Furthermore,the N addition treatments resulted in greater network complexity and higher abundances of keystone taxa of phoD-and pqqC-HB compared to those of the no-N addition treatments.The keystone taxa implicated in P cycling were also associated with carbon(C)and N cycling processes.Microbial community composition and assembly processes were the main factors driving labile Pi for phoD-HB,whereas keystone taxa contributed the most to labile Pi for pqqC-HB.These results emphasize that distinct mechanisms of phoD-and pqqC-HB regulate P availability under fertilization management and underline the significance of microbial community assembly and keystone taxa in soil ecological functions,offering fresh perspectives on comprehending the biological processes facilitated by microorganisms in enhancing soil quality.
基金the Natural Science Foundation of Jilin Province(No.20230101052JC)the National Natural Science Foundation of China(No.52173200)Hangzhou Jingshi Technology Co.,Ltd.,and Hangzhou Xuhui Technology Co.,Ltd.for financial support。
文摘A renewable fluorescent material(GСCP5L)has been constructed via supramolecular assembly between a new derivative of pillararene,namely leggero pillar[5]arene,as the host molecule(CP5L)and a tetraphenylethylene(TPE)-based ditopic vip(G).This new material can simultaneously perform efficient detection and separation of silver(I)from aqueous environments.Possessing an electron-rich cavity and two cytosine groups modified on both rims,CP5L functions as the host-vip binding site for G and offers exclusive coordination sites for further interaction with Ag+.Adding Ag+to the system undergoes dramatic fluorescence enhancement due to the mechanism of supramolecular assembly-induced enhanced emission(SAIEE).This fluorescence enhancement allows for efficient and visualized detection following a“light-up”pattern,achieving a limit of detection(LOD)of 1.3×10^(-7)mol/L,which is fully in line with the World Health Organization's drinking water standard of 9×10^(-7)mol/L.In addition,GСCP5L also shows strong anti-interference capability against other cationic species.For the separation of Ag+from aqueous systems,GСCP5L displays exceptional adsorption efficiency(97%)and reliable recovery performance,demonstrating excellent recyclability after five experimental cycles without compromising its adsorption activity.
基金supported by grants from the National Natural Science Foundation of China for Excellent Young Scientists Fund Program(No.42222105)the National Natural Science Foundation of China General Program(No.42171144)+1 种基金the Assessment of Ecosystem Carbon Stock and Turnover Patterns in Qinghai Province(No.2021-SFA7-1-1)the Second Tibetan Plateau Scientific Expedition and Research Program(STEP)(No.2021QZKK0100)。
文摘Bacterial communities play a crucial role in permafrost biogeochemical cycling and ecosystem function maintenance.Bacterial interaction is one of the main factors in shaping soil bacterial communities.However,how would bacterial interaction influence the bacterial communities in permafrost of the Qinghai-Tibet Plateau(QTP)remains largely unknown.Here we collected paired soil samples from both the active and permafrost layers of two typical QTP permafrost regions in October 2020 for Tuotuohe River(TTH)and May 2022 for Aerjin(ARJ),and investigated the bacterial communities and the role of interactions in structuring the bacterial community and its assembly process through amplicon sequencing of the 16S rRNA gene.Our study revealed distinct bacterial communities,with significant differences in the relative abundances of Proteobacteria(P<0.05),Acidobacteriota(P<0.001),Bacteroidota(P<0.05),and Planctomycetota(P<0.001)between the active layer and the permafrost layer.More importantly,we found that interspecies interactions,including both positive and negative associations,were strongly correlated with bacterial alpha-diversity and played a significant role in community variation and assembly process.Our findings also showed that the community assembly in both the active and permafrost layers was primarily driven by homogeneous selection of deterministic processes,with interspecies interactions accounting for more than 58%and 63%of all assembly mechanisms,respectively.This is the first study to quantify the contribution of bacterial interactions in shaping the bacterial community and its assembly process in permafrost of QTP,highlighting the importance of considering interspecies interactions in future modeling efforts.Our work also emphasizes the necessity of including interspecies interactions in microbial process projections to reduce uncertainty.
基金supported by the Educational Commission of Anhui Province of China(No.KJ2021A0168)the Research Fund of Anhui Agricultural University(No.rc422112).
文摘The environmental impacts of acid mine drainage(AMD)from open-pit mining are profoundly detrimental,yet knowledge about its effects on paddy soil microbial communities,especially at greater depths,remains limited.In this investigation,we compared soils affected by AMD versus unaffected soil depth profiles in terms of bacterial diversity and community assembly.The profiles in AMD-polluted soils exhibited tight geochemical gradients,characterized by increased acidity,SO_(4)^(2-),NO_(3)^(-),and heavy metal content compared to unpolluted soils.Notably,AMD significantly diminished soil bacterial biodiversity.A depthwise analysis showed distinct microbial stratification,with certain bacteria like Candidatus_Solibacter and Candidatus_Koribacter predominated in polluted soils,while others like Haliangium and Nitrospira were more prevalent in control soils.Interestingly,despite variable soil conditions,predictedmetabolic pathways,particularly those involving carbon,nitrogen,and sulfur,showed relative stability.AMD pollution induced the upregulation of methylcoenzyme M reductase and sulfate reductase genes.Bacterial communities were more responsive to pH and nutrient content rather than heavy metals,with pH and SO_(4)^(2-)being the primary drivers of microbial diversity and distribution.Additionally,pHwas identified as the most significant influence on the predicted methane,sulfur,and nitrogen metabolism.Furthermore,deterministic processes played a more significant role in community assembly of polluted soils,while heterogeneous selection gained importance with increasing depth in control soils.Additionally,microbial co-occurrences,particularly positive interactions,were more prevalent in the polluted soils with reduced network modularity and keystone taxa.These findings offer insights into sustaining microbial diversity in extreme environments.
