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Genome-wide characterization and expression analysis of the cultivated peanut AhPR10 gene family mediating resistance to Aspergillus flavus
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作者 Qi Zhao Mengjie Cui +11 位作者 Tengda Guo Lei Shi Feiyan Qi Ziqi Sun Pei Du Hua Liu Yu Zhang Zheng Zheng Bingyan Huang Wenzhao Dong Suoyi Han Xinyou Zhang 《Journal of Integrative Agriculture》 2026年第1期56-67,共12页
The pathogenesis-related protein PR10 plays a vital role in plant growth,development,and stress responses.This study systematically identified and analyzed PR10 genes in cultivated peanut(Arachis hypogaea L.),examinin... The pathogenesis-related protein PR10 plays a vital role in plant growth,development,and stress responses.This study systematically identified and analyzed PR10 genes in cultivated peanut(Arachis hypogaea L.),examining their phylogenetic relationships,conserved motifs,gene structures,and syntenic relationships.The analysis identified 54 Ah PR10 genes,which were classified into eight groups based on phylogenetic relationships,supported by gene structure and conserved motif characterization.Analysis of chromosomal distribution and synteny demonstrated that segmental duplications played a crucial role in the expansion of the Ah PR10 gene family.The identified Ah PR10 genes exhibited both constitutive and inducible expression patterns.Significantly,Ah PR10-7,Ah PR10-33,and Ah PR10-41 demonstrated potential importance in peanut resistance to Aspergillus flavus.In vitro fungistatic experiments demonstrated that recombinant Ah PR10-33 effectively inhibited A.flavus mycelial growth.These findings provide valuable insights for future investigations into Ah PR10 functions in protecting peanut from A.flavus infection. 展开更多
关键词 cultivated peanut PR10 phylogenetic analysis expression pattern Aspergillus avus
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Expression level and spatial distribution of opsin gene in Oratosquilla oratoria compound eye
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作者 Fangrui LOU Xiaowen DUAN +2 位作者 Jiaoli ZHOU Yue DING Zhiqiang HAN 《Journal of Oceanology and Limnology》 2026年第1期340-356,共17页
Due to the unique microstructure and diverse opsin genes of the trinocular compound eye,stomatopoda possess an extraordinary ability to perceive multiple properties of light.They not only can detect natural light(NL)a... Due to the unique microstructure and diverse opsin genes of the trinocular compound eye,stomatopoda possess an extraordinary ability to perceive multiple properties of light.They not only can detect natural light(NL)and linearly polarized light(LPL),but also are the only animals capable of recognizing circularly polarized light(CPL).Here,we integrated single-cell RNA sequencing,previously published Illumina data,and in-situ hybridization(ISH)to quantify and localize functional opsin genes in Oratosquilla oratoria,a common stomatopoda species in the China Sea.A total of high-quality 31777 cells were captured for the first time in the O.oratoria compound eye,which were classified into 25 cell subpopulations,and hypothesized that cluster 22 is a critical cell subpopulation responsible for light(whether NL,LPL,or CPL)response in O.oratoria.Furthermore,we propose that the long-wavelengthsensitive opsin gene(lws)gene family,retinol dehydrogenase(rdh),voltage-gated ion channel(vgic),arrestin(arr),and myosin(myo)collectively mediate the light response in O.oratoria.Considering that very few vision-related opsin genes show differential expression in right-handed CPL(RCPL)-vs.-dark(DL),which provides additional evidence that stomatopoda cannot recognize RCPL.Meanwhile,we believe that UV-stimulated scaffold protein A(uvssa)and red pigment concentrating hormone(rpch)play special contributions in the left-handed CPL(LCPL)environment response.ISH revealing that 16 lws,6 middle-wavelength-sensitive(mws),and 2 ultraviolet(uv)opsin genes were expressed in the photoreceptors of the O.oratoria compound eye.Although the inability to determine the functional types of cell subpopulations limits the resolution of opsin genes,these findings systematically elucidate the specific expression patterns of opsin genes in O.oratoria and represent a significant step toward refining the visual ecological theory of O.oratoria and other stomatopod species. 展开更多
关键词 Oratosquilla oratoria opsin gene expression pattern single-cell RNA sequencing in-situ hybridization
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Gap-free,haplotype-resolved genome assembly reveals allele-specific expression and fruit color regulation in coconut
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作者 Min Chen Jing Li +6 位作者 Ziqi Ye Xiwei Sun Xiaomei Liu Hao Ding Lixia Zhou Xingtan Zhang Yaodong Yang 《Horticultural Plant Journal》 2026年第1期217-220,共4页
Coconut(Cocos nucifera L.),a major oil and fruit crop of the Arecaceae family,is extensively cultivated across the Asia—Pacific region.Despite its agricultural importance,genome assembly in coconut remains challengin... Coconut(Cocos nucifera L.),a major oil and fruit crop of the Arecaceae family,is extensively cultivated across the Asia—Pacific region.Despite its agricultural importance,genome assembly in coconut remains challenging due to its large genome size and high proportion of repetitive sequences.Allele-specific expression(ASE)plays a key role in regulating plant development and evolution,yet research on ASE in coconut is limited(Shao et al.,2019;Li et al.,2021;Zhang et al.,2021;Hu et al.,2022).Among phenotypic traits,fruit color is especially important as an indicator of maturity,guiding harvest timing and post-harvest processes(Kapoor et al.,2022).While prior studies have explored various coconut traits such as salt tolerance,fiber content,and plant height(Wang et al.,2021;Yang et al.,2021),investigations into ASE and fruit color remain scarce. 展开更多
关键词 allele specific expression Cocos nucifera haplotype resolved fruit color Asia Pacific region COCONUT phenotypic trai oil fruit crop
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Real-Time Facial Expression Recognition on Res-MobileNetV3 被引量:2
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作者 Li Beibei Zhu Jiansheng +3 位作者 Li Suwen Dai Linlin Yan Zhiyuan Ma Liangde 《China Communications》 2025年第3期54-64,共11页
Artificial intelligence,such as deep learning technology,has advanced the study of facial expression recognition since facial expression carries rich emotional information and is significant for many naturalistic situ... Artificial intelligence,such as deep learning technology,has advanced the study of facial expression recognition since facial expression carries rich emotional information and is significant for many naturalistic situations.To pursue a high facial expression recognition accuracy,the network model of deep learning is generally designed to be very deep while the model’s real-time performance is typically constrained and limited.With MobileNetV3,a lightweight model with a good accuracy,a further study is conducted by adding a basic ResNet module to each of its existing modules and an SSH(Single Stage Headless Face Detector)context module to expand the model’s perceptual field.In this article,the enhanced model named Res-MobileNetV3,could alleviate the subpar of real-time performance and compress the size of large network models,which can process information at a rate of up to 33 frames per second.Although the improved model has been verified to be slightly inferior to the current state-of-the-art method in aspect of accuracy rate on the publically available face expression datasets,it can bring a good balance on accuracy,real-time performance,model size and model complexity in practical applications. 展开更多
关键词 artificial intelligence facial expression recognition MobileNetV3 ResNet SSH
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Enhancing Folate Content in Japonica Rice Through Co-expression of OsADCS and OsGTPCHI Indica Alleles 被引量:1
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作者 LAI Changkai HU Shikai +9 位作者 JIAO Guiai WANG Ling SHAO Gaoneng ZHAO Fengli XIE Lihong WEI Xiangjin LÜYusong SHENG Zhonghua TANG Shaoqing HU Peisong 《Rice science》 2025年第3期353-366,I0050-I0058,共23页
Rice is a poor source of folate,an essential micronutrient for the body.Biofortification offers an effective way to enhance the folate content of rice and alleviate folate deficiencies in humans.In this study,we confi... Rice is a poor source of folate,an essential micronutrient for the body.Biofortification offers an effective way to enhance the folate content of rice and alleviate folate deficiencies in humans.In this study,we confirmed that OsADCS and OsGTPCHI,encoding the initial enzymes necessary for folate synthesis,positively regulate folate accumulation in knockout mutants of both japonica and indica rice backgrounds.The folate content in the low-folate japonica variety was slightly increased by the expression of the indica alleles driven by the endosperm-specific promoter.We further obtained co-expression lines by stacking OsADCS and OsGTPCHI genes;the folate accumulation in brown rice and polished rice reached 5.65μg/g and 2.95μg/g,respectively,representing 37.9-fold and 26.5-fold increases compared with the wild type.Transcriptomic analysis of rice grains from six transgenic lines showed that folate changes affected biological pathways involved in the synthesis and metabolism of rice seed storage substances,while the expression of other folate synthesis genes was weakly regulated.In addition,we identified Aus rice as a high-folate germplasm carrying superior haplotypes of OsADCS and OsGTPCHI through natural variation.This study provides an alternative and effective complementary strategy for rice biofortification,promoting the rational combination of metabolic engineering and conventional breeding to breed high-folate varieties. 展开更多
关键词 BIOFORTIFICATION endosperm-specific expression OsADCS OsGTPCHI folate content GRAIN Oryza sativa
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An Empirical Study of the Impact of AI-Based Reflective Dialogue Model on EFL Students’Oral Expression Skills 被引量:1
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作者 Yu Zhao You-You Zhang +2 位作者 Xiao-Nan Luo Dan-Ting Deng Qun-Fang Zeng 《教育技术与创新》 2025年第3期9-20,共12页
Oral expression skills play an essential role in the development of EFL students’language abilities,and how to improve EFL students’oral expression skills is an essential and challenging task.This study adopts a qua... Oral expression skills play an essential role in the development of EFL students’language abilities,and how to improve EFL students’oral expression skills is an essential and challenging task.This study adopts a quasi-experimental research method to carry out the research and proposes an AI-based reflective dialogue model.Based on this,an analysis of the impact brought by this model on EFL students’oral expression performance and learning anxiety levels.The results show that students in the experimental group have significantly higher oral expression performance than those in the control group in the three dimensions of grammatical accuracy,expressive fluency,and word accuracy.In addition,the students in the experimental group produced facilitated anxiety after using the AI-based reflective dialogue model for oral expression learning,which prompted the students to learn more diligently. 展开更多
关键词 human-computer dialogue model oral expression reflective dialogue AI EFL student
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Link-16 anti-jamming performance evaluation based on grey relational analysis and cloud model 被引量:1
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作者 NING Xiaoyan WANG Ying +1 位作者 WANG Zhenduo SUN Zhiguo 《Journal of Systems Engineering and Electronics》 2025年第1期62-72,共11页
Anti-jamming performance evaluation has recently received significant attention. For Link-16, the anti-jamming performance evaluation and selection of the optimal anti-jamming technologies are urgent problems to be so... Anti-jamming performance evaluation has recently received significant attention. For Link-16, the anti-jamming performance evaluation and selection of the optimal anti-jamming technologies are urgent problems to be solved. A comprehensive evaluation method is proposed, which combines grey relational analysis (GRA) and cloud model, to evaluate the anti-jamming performances of Link-16. Firstly, on the basis of establishing the anti-jamming performance evaluation indicator system of Link-16, the linear combination of analytic hierarchy process(AHP) and entropy weight method (EWM) are used to calculate the combined weight. Secondly, the qualitative and quantitative concept transformation model, i.e., the cloud model, is introduced to evaluate the anti-jamming abilities of Link-16 under each jamming scheme. In addition, GRA calculates the correlation degree between evaluation indicators and the anti-jamming performance of Link-16, and assesses the best anti-jamming technology. Finally, simulation results prove that the proposed evaluation model can achieve the objective of feasible and practical evaluation, which opens up a novel way for the research of anti-jamming performance evaluations of Link-16. 展开更多
关键词 LINK-16 ANTI-JAMMING grey relational analysis(GRA) cloud model combination weights
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Multi-View Picture Fuzzy Clustering:A Novel Method for Partitioning Multi-View Relational Data 被引量:1
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作者 Pham Huy Thong Hoang Thi Canh +2 位作者 Luong Thi Hong Lan Nguyen Tuan Huy Nguyen Long Giang 《Computers, Materials & Continua》 2025年第6期5461-5485,共25页
Multi-view clustering is a critical research area in computer science aimed at effectively extracting meaningful patterns from complex,high-dimensional data that single-view methods cannot capture.Traditional fuzzy cl... Multi-view clustering is a critical research area in computer science aimed at effectively extracting meaningful patterns from complex,high-dimensional data that single-view methods cannot capture.Traditional fuzzy clustering techniques,such as Fuzzy C-Means(FCM),face significant challenges in handling uncertainty and the dependencies between different views.To overcome these limitations,we introduce a new multi-view fuzzy clustering approach that integrates picture fuzzy sets with a dual-anchor graph method for multi-view data,aiming to enhance clustering accuracy and robustness,termed Multi-view Picture Fuzzy Clustering(MPFC).In particular,the picture fuzzy set theory extends the capability to represent uncertainty by modeling three membership levels:membership degrees,neutral degrees,and refusal degrees.This allows for a more flexible representation of uncertain and conflicting data than traditional fuzzy models.Meanwhile,dual-anchor graphs exploit the similarity relationships between data points and integrate information across views.This combination improves stability,scalability,and robustness when handling noisy and heterogeneous data.Experimental results on several benchmark datasets demonstrate significant improvements in clustering accuracy and efficiency,outperforming traditional methods.Specifically,the MPFC algorithm demonstrates outstanding clustering performance on a variety of datasets,attaining a Purity(PUR)score of 0.6440 and an Accuracy(ACC)score of 0.6213 for the 3 Sources dataset,underscoring its robustness and efficiency.The proposed approach significantly contributes to fields such as pattern recognition,multi-view relational data analysis,and large-scale clustering problems.Future work will focus on extending the method for semi-supervised multi-view clustering,aiming to enhance adaptability,scalability,and performance in real-world applications. 展开更多
关键词 Multi-view clustering picture fuzzy sets dual anchor graph fuzzy clustering multi-view relational data
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High Expression of INF2 Predicts Poor Prognosis and Promotes Hepatocellular Carcinoma Progression
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作者 WANG Hai-Biao LIN Man +4 位作者 YE Fu-Sang SHI Jia-Xin LI Hong YE Meng WANG Jie 《生物化学与生物物理进展》 北大核心 2025年第1期194-208,共15页
Objective INF2 is a member of the formins family.Abnormal expression and regulation of INF2 have been associated with the progression of various tumors,but the expression and role of INF2 in hepatocellular carcinoma(H... Objective INF2 is a member of the formins family.Abnormal expression and regulation of INF2 have been associated with the progression of various tumors,but the expression and role of INF2 in hepatocellular carcinoma(HCC)remain unclear.HCC is a highly lethal malignant tumor.Given the limitations of traditional treatments,this study explored the expression level,clinical value and potential mechanism of INF2 in HCC in order to seek new therapeutic targets.Methods In this study,we used public databases to analyze the expression of INF2 in pan-cancer and HCC,as well as the impact of INF2 expression levels on HCC prognosis.Quantitative real time polymerase chain reaction(RT-qPCR),Western blot,and immunohistochemistry were used to detect the expression level of INF2 in liver cancer cells and human HCC tissues.The correlation between INF2 expression and clinical pathological features was analyzed using public databases and clinical data of human HCC samples.Subsequently,the effects of INF2 expression on the biological function and Drp1 phosphorylation of liver cancer cells were elucidated through in vitro and in vivo experiments.Finally,the predictive value and potential mechanism of INF2 in HCC were further analyzed through database and immunohistochemical experiments.Results INF2 is aberrantly high expression in HCC samples and the high expression of INF2 is correlated with overall survival,liver cirrhosis and pathological differentiation of HCC patients.The expression level of INF2 has certain diagnostic value in predicting the prognosis and pathological differentiation of HCC.In vivo and in vitro HCC models,upregulated expression of INF2 triggers the proliferation and migration of the HCC cell,while knockdown of INF2 could counteract this effect.INF2 in liver cancer cells may affect mitochondrial division by inducing Drp1 phosphorylation and mediate immune escape by up-regulating PD-L1 expression,thus promoting tumor progression.Conclusion INF2 is highly expressed in HCC and is associated with poor prognosis.High expression of INF2 may promote HCC progression by inducing Drp1 phosphorylation and up-regulation of PD-L1 expression,and targeting INF2 may be beneficial for HCC patients with high expression of INF2. 展开更多
关键词 HCC INF2 expression PROGNOSIS Drp1
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MiR-340-5p affects the proliferation and transfer of gastric cancer cells by targeting lncRNA HCG11 and NRF2 expression 被引量:1
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作者 Rina Su Wei Luan +3 位作者 Kai Zhang Shuai Liu Xiaoqing Zhang Yanwei Gao 《Oncology and Translational Medicine》 2025年第1期29-35,共7页
Objective:The aim of the study was to investigate the expression and biological role of nuclear factor erythroid–related factor 2(NRF2)in gastric cancer cells.Methods:Western blotting(WB)and reverse transcription-pol... Objective:The aim of the study was to investigate the expression and biological role of nuclear factor erythroid–related factor 2(NRF2)in gastric cancer cells.Methods:Western blotting(WB)and reverse transcription-polymerase chain reaction(RT-PCR)were used to detect the expression of NRF2 in the tumor tissues of patients with gastric cancer and MKN45 cells.NRF2 was transfected into MKN45 gastric cancer cells,and apoptosis was detected using flow cytometry.The 3-(4,5-dimethylthiazole-2-yl)-2.5-dipheny-tetrazolium bromide(MTT)assay was per-formed to detect cell proliferation.Transwell and scratch experiments were performed to detect cell invasion and migration rates.WB blot-ting was performed to detect Bcl-2,COX-2,PEG2,Bax,and Cyt-C protein expression.RT-PCR was used to detect Bcl-2,COX-2,PEG2,Bax,Cyt-C,miR-340-5p,lncRNA HCG11,and NRF2 mRNA expression.Results:NRF2 expression increased in gastric cancer tissues and in the MKN45 gastric cancer cell model.Compared with the blank group,the shNRF2 knockdown group showed a significant increase in the MKN45 gastric cancer cell apoptosis rate(p<0.05)and a sig-nificant decrease in invasion and migration rates(p<0.05).WB and RT-PCR showed that,in the shNRF2 knockdown group,Bcl-2 protein and mRNA,miR-340-5p,and lncRNA HCG11 expression was significantly increased,whereas COX-2,PEG2,Bax,and Cyt-C protein and mRNA expression was significantly reduced(p<0.05).In the NRF2 overexpression group,Bcl-2 protein and mRNA expression was sig-nificantly reduced,whereas COX-2,PEG2,Bax,and Cyt-C protein and mRNA expression was significantly increased(p<0.05).The op-posite was observed for the NRF2 overexpression group.When miR-340-5p mimics were transfected into MKN45 gastric cancer cells,NRF2 and HCG11 expression significantly reduced(p<0.05).When the miR-340-5p inhibitor was transfected into MKN45 gastric cancer cells,NRF2 and HCG11 expression significantly increased(p<0.05).Conclusions:The invasion,migration,abnormal proliferation,and apoptosis of MKN45 gastric cancer cells are closely related to an im-balance in NRF2 expression,suggesting that MiR-340-5p may target and regulate the lncRNA HCG11,thereby inhibiting NRF2 expression. 展开更多
关键词 Gastric cancer Nuclear factor erythroid 2 related factor 2(NRF2) Apoptosis COX-2/PEG 2 signaling pathway
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Heterologous Expression,Purification and Enzymatic Characterization of Xylitol Dehydrogenase from the Thermophilic Fungus Talaromyces emersonii
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作者 MENG Er QU Cong +8 位作者 YI Ke LI Hui-Min DUAN Xin-Yi ZHANG Zhe-Yuan HE Shao-Long LUO Yu-Tao WU Lei ZHANG Dong-Yi LIU Chang-Jun 《中国生物化学与分子生物学报》 北大核心 2025年第7期1007-1018,共12页
The xylitol dehydrogenase(XDH)is a crucial enzyme involved in the xylose utilization in pentose⁃catabolizing yeasts and fungi.In addition to producing xylulose,XDH can also be employed to develop a biosensor for monit... The xylitol dehydrogenase(XDH)is a crucial enzyme involved in the xylose utilization in pentose⁃catabolizing yeasts and fungi.In addition to producing xylulose,XDH can also be employed to develop a biosensor for monitoring xylitol concentration.In this study,the gene encoding the thermophilic fungus Talaromyces emersonii XDH(TeXDH)was heterologously expressed in Escherichia coli BL21(DE3)at 16℃in the soluble form.Recombinant TeXDH with high purity was purified by using a Ni⁃NTA affinity column.Size⁃exclusion chromatography and SDS⁃PAGE analysis demonstrated that the puri⁃fied recombinant TeXDH exists as a native trimer with a molecular mass of approximately 116 kD,and is composed of three identical subunits,each with a molecular weight of around 39 kD.The TeXDH strictly preferred NAD^(+)as a coenzyme to NADP^(+).The optimal temperature and pH of the TeXDH were 40℃and 10.0,respectively.After EDTA treatment,the enzyme activity of TeXDH decreased to 43.26%of the initial enzyme activity,while the divalent metal ions Mg^(2+)or Ca^(2+)could recover the enzyme activity of TeXDH,reaching 103.32%and 110.69%of the initial enzyme activity,respectively,making them the optimal divalent metal ion cofactors for TeXDH enzyme.However,the divalent metal ions of Mn^(2+),Ni^(2+),Cu^(2+),Zn^(2+),Co^(2+),and Cd^(2+)significantly inhibited the activity of TeXDH.ICP⁃MS and molecular doc⁃king studies revealed that 1 mol/L of TeXDH bound 2 mol/L Zn^(2+)ions and 1 mol/L Mg^(2+)ion.Further⁃more,TeXDH exhibited a high specificity for xylitol,laying the foundation for the development of future xylitol biosensors. 展开更多
关键词 xylitol dehydrogenase(XDH) Talaromyces emersonii heterologous expression enzymatic characterization
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Osteocytic vinculin controls bone mass by modulating Mef2c-driven sclerostin expression in mice
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作者 Yishu Wang Jianmei Huang +7 位作者 Sixiong Lin Lei Qin Dingyu Hao Peijun Zhang Shaochuan Huo Xuenong Zou Di Chen Guozhi Xiao 《Bone Research》 2025年第5期1282-1294,共13页
The focal adhesion(FA)is the structural basis of the cell-extracellular matrix crosstalk and plays important roles in control of organ formation and function.Here we show that expression of FA protein vinculin is dram... The focal adhesion(FA)is the structural basis of the cell-extracellular matrix crosstalk and plays important roles in control of organ formation and function.Here we show that expression of FA protein vinculin is dramatically reduced in osteocytes in patients with aging-related osteoporosis.Vinculin loss severely impaired osteocyte adhesion and dendrite formation.Deleting vinculin using the mouse 10-kb Dmp1-Cre transgenic mice causes dramatic bone loss in the weight-bearing long bones and spine,but not in the skull,in both young and aged mice by impairing osteoblast formation and function without markedly affecting bone resorption.Vinculin loss impairs the anabolic response of skeleton to mechanical loading in mice.Vinculin knockdown increases,while vinculin overexpression decreases,sclerostin expression in osteocytes without impacting expression of Mef2c,a major transcriptional regulator of the Sost gene,which encodes sclerostin.Vinculin interacts with Mef2c and retains the latter in the cytoplasm.Thus,vinculin loss enhances Mef2c nuclear translocation and binding to the Sost enhancer ECR5 to promote sclerostin expression in osteocytes and reduces bone formation.Consistent with this notion,deleting Sost expression in osteocytes reverses the osteopenic phenotypes caused by vinculin loss in mice.Finally,we find that estrogen is a novel regulator of vinculin expression in osteocytes and that vinculin-deficient mice are resistant to ovariectomy-induced bone loss.Thus,we demonstrate a novel mechanism through which vinculin inhibits the Mef2c-driven sclerostin expression in osteocytes to promote bone formation. 展开更多
关键词 focal adhesion fa mef c driven sclerostin expression aging related osteoporosis osteocytic vinculin osteocyte adhesion bone loss control organ formation functionhere focal adhesion
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Gene Expression Data Analysis Based on Mixed Effects Model
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作者 Yuanbo Dai 《Journal of Computer and Communications》 2025年第2期223-235,共13页
DNA microarray technology is an extremely effective technique for studying gene expression patterns in cells, and the main challenge currently faced by this technology is how to analyze the large amount of gene expres... DNA microarray technology is an extremely effective technique for studying gene expression patterns in cells, and the main challenge currently faced by this technology is how to analyze the large amount of gene expression data generated. To address this, this paper employs a mixed-effects model to analyze gene expression data. In terms of data selection, 1176 genes from the white mouse gene expression dataset under two experimental conditions were chosen, setting up two conditions: pneumococcal infection and no infection, and constructing a mixed-effects model. After preprocessing the gene chip information, the data were imported into the model, preliminary results were calculated, and permutation tests were performed to biologically validate the preliminary results using GSEA. The final dataset consists of 20 groups of gene expression data from pneumococcal infection, which categorizes functionally related genes based on the similarity of their expression profiles, facilitating the study of genes with unknown functions. 展开更多
关键词 Mixed Effects Model Gene expression Data Analysis Gene Analysis Gene Chip
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Glutamatergic CYLD deletion leads to aberrant excitatory activity in the basolateral amygdala:association with enhanced cued fear expression
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作者 Huidong Li Faqin Li +8 位作者 Zhaoyi Chen Erwen Wu Xiaoxi Dai Danni Li Haojie An Shiyi Zeng Chunyan Wang Li Yang Cheng Long 《Neural Regeneration Research》 SCIE CAS 2025年第11期3259-3272,共14页
Neuronal activity,synaptic transmission,and molecular changes in the basolateral amygdala play critical roles in fear memory.Cylindromatosis(CYLD)is a deubiquitinase that negatively regulates the nuclear factor kappa-... Neuronal activity,synaptic transmission,and molecular changes in the basolateral amygdala play critical roles in fear memory.Cylindromatosis(CYLD)is a deubiquitinase that negatively regulates the nuclear factor kappa-B pathway.CYLD is well studied in non-neuronal cells,yet underinvestigated in the brain,where it is highly expressed.Emerging studies have shown involvement of CYLD in the remodeling of glutamatergic synapses,neuroinflammation,fear memory,and anxiety-and autism-like behaviors.However,the precise role of CYLD in glutamatergic neurons is largely unknown.Here,we first proposed involvement of CYLD in cued fear expression.We next constructed transgenic model mice with specific deletion of Cyld from glutamatergic neurons.Our results show that glutamatergic CYLD deficiency exaggerated the expression of cued fear in only male mice.Further,loss of CYLD in glutamatergic neurons resulted in enhanced neuronal activation,impaired excitatory synaptic transmission,and altered levels of glutamate receptors accompanied by over-activation of microglia in the basolateral amygdala of male mice.Altogether,our study suggests a critical role of glutamatergic CYLD in maintaining normal neuronal,synaptic,and microglial activation.This may contribute,at least in part,to cued fear expression. 展开更多
关键词 basolateral amygdala cued fear expression cylindromatosis deubiquitinase glutamate receptor 1 glutamatergic neuron microglial activation N-methyl-D-aspartate receptor 1 neuronal activation synaptic transmission
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A Review of Joint Extraction Techniques for Relational Triples Based on NYT and WebNLG Datasets
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作者 Chenglong Mi Huaibin Qin +1 位作者 Quan Qi Pengxiang Zuo 《Computers, Materials & Continua》 2025年第3期3773-3796,共24页
In recent years,with the rapid development of deep learning technology,relational triplet extraction techniques have also achieved groundbreaking progress.Traditional pipeline models have certain limitations due to er... In recent years,with the rapid development of deep learning technology,relational triplet extraction techniques have also achieved groundbreaking progress.Traditional pipeline models have certain limitations due to error propagation.To overcome the limitations of traditional pipeline models,recent research has focused on jointly modeling the two key subtasks-named entity recognition and relation extraction-within a unified framework.To support future research,this paper provides a comprehensive review of recently published studies in the field of relational triplet extraction.The review examines commonly used public datasets for relational triplet extraction techniques and systematically reviews current mainstream joint extraction methods,including joint decoding methods and parameter sharing methods,with joint decoding methods further divided into table filling,tagging,and sequence-to-sequence approaches.In addition,this paper also conducts small-scale replication experiments on models that have performed well in recent years for each method to verify the reproducibility of the code and to compare the performance of different models under uniform conditions.Each method has its own advantages in terms of model design,task handling,and application scenarios,but also faces challenges such as processing complex sentence structures,cross-sentence relation extraction,and adaptability in low-resource environments.Finally,this paper systematically summarizes each method and discusses the future development prospects of joint extraction of relational triples. 展开更多
关键词 Relation triplet extraction joint extraction methods named entity recognition relation extraction
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An Evaluation and Similarity Analysis of Provincial Green Development Levels in China Using Grey Relational Analysis
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作者 Fan Bo Chen Qian 《Contemporary Social Sciences》 2025年第1期47-68,共22页
Green development is vital for bringing about high-quality development,which makes measuring and comparing provincial green development levels essential.This study calculates the comprehensive green development scores... Green development is vital for bringing about high-quality development,which makes measuring and comparing provincial green development levels essential.This study calculates the comprehensive green development scores using panel data from 30 Chinese provinces and autonomous regions(2013-2022)and a combined subjective-objective weighting method.It also innovatively establishes a grey relational degree matrix and a grey improvement sequence to analyze provincial similarities and identify benchmarks for improvement.The results indicate that ecological and environmental protection holds the highest weight among the primary indicators.Beijing,Shanghai,Tianjin,Zhejiang,and Jiangsu lead in green development,with Shanghai,Beijing,and Tianjin exhibiting distinct development trajectories,while Guizhou and Yunnan share a similar trend.Zhejiang and Shaanxi have prominent benchmarks for improvement,while some provinces dynamically adjust their targets.The results suggest that advanced regions should further refine their green development pathways to align with their specific contexts,while less-developed regions should adaptively learn from the appropriate benchmarks and periodically reassess their strategies.This study provides scientific guidance for regional green development planning,policymaking,and benchmarking,thus contributing to sustainable regional development.Furthermore,it lays a foundation for future research to expand into broader datasets,scales,influencing factors,and policy evaluations. 展开更多
关键词 green development grey relational degree grey relational degree matrix grey improvement sequence benchmark for improvement
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The Influence of Death Reflection on Existential Well-Being: The Mediating Role of Relational Self-Esteem
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作者 Lei Yue 《心理学研究评论(中英文版)》 2025年第1期1-6,共6页
Global challenges like epidemics,wars,and climate change expose humans to life-and-death threats daily,triggering death anxiety and subsequent death reflection,which involves deliberate cognitive processing of mortali... Global challenges like epidemics,wars,and climate change expose humans to life-and-death threats daily,triggering death anxiety and subsequent death reflection,which involves deliberate cognitive processing of mortality.While some studies have shown the positive impacts of death reflection,such as on well-being,the relationship between death reflection and existential well-being,closely related to life and death,remains unexplored.This study aimed to investigate the effects of death reflection on existential well-being and the mediating role of relational self-esteem.675 university students from Sichuan and Hubei,China,completed the death reflection scale,relational self-esteem scale,and the existential well-being subscale of the spiritual well-being scale.Results indicated that death reflection was positively correlated with both relational self-esteem and existential well-being,and relational self-esteem was positively related to existential well-being.Mediation analysis confirmed that relational self-esteem mediated the relationship between death reflection and existential well-being.This study not only enriches the research content on the positive effects of death reflection theoretically,but also holds significant practical value in guiding individuals who have experienced death or been exposed to death-related information in their psychological reconstruction and recovery. 展开更多
关键词 Death Reflection Existential Well-Being relational Self-esteem
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Changes in growth and transcriptome expression patterns in mandarin fish(Siniperca scherzeri) under different photoperiods
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作者 Jiao Li Yong Wei +17 位作者 Jun Song Jun Yang Xu-Fang Liang Ke Lu Qiuling Wang Ke-Xiang Wang Kaiting Zhi Dan Zhao Yan Wang Yufeng Zhang Yanjun Wang Qian Sun Xin-Yue Zhang Quanxiang Meng Hechen Sun Yechong Han Lin Qi Wenqi Wang 《Acta Oceanologica Sinica》 2025年第9期108-122,共15页
Mandarin fish(Siniperca scherzeri) has high market prices and significant market potential in China because of its highquality meat and high nutritional value. However, due to the limited scale of aquaculture, meeting... Mandarin fish(Siniperca scherzeri) has high market prices and significant market potential in China because of its highquality meat and high nutritional value. However, due to the limited scale of aquaculture, meeting the market demand is difficult, making the effective development of the aquaculture potential of mandarin fish an important challenge for the industry. In this study, a 30-d breeding experiment was conducted on mandarin fish larvae under three photoperiod conditions: G1 8 h light:16 h dark(8L:16D), G2 12 h light:12 h dark(12L:12D), and G3 16 h light:8 h dark(16L:8D). The results showed that the G2 group exhibited the best growth performance and development status, with final body weights, weight gain rates, and specific growth rates all higher than those of the other two groups(P < 0.05). Observations of sections from each group revealed that the intestinal villi length and muscle thickness of the G2 group were significantly greater than those of the other two groups(P < 0.05). The G2 group inhibited the transcriptional activation of key circadian rhythm genes, including nr1d2a, nr1d1 and per1, while upregulating the expression of BMAL1 in S. scherzeri.The activation of both the insulin signalling pathway and the Fox O signalling pathway enhanced the efficient secretion of insulin, which subsequently played a critical role in regulating fatty acid metabolism. This active fatty acid metabolism provided an optimal energy supply, ensuring that other nutrients were fully utilized during the growth and development process while minimizing unnecessary nutrient loss. Consequently, this mechanism effectively promoted the overall growth and development of S. scherzeri. This study was the first to elucidate the transcriptomic expression patterns of S. scherzeri under varying photoperiod conditions. In response to the cyclic alternation of day and night, S. scherzeri regulated their metabolic levels and the transcriptional activation of downstream target genes via insulin signalling. 展开更多
关键词 Siniperca scherzeri PHOTOPERIOD TRANSCRIPTOME differential expression
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Tissue Expression Pattern and Bioinformatics Analysis of OsKMP2 Gene in Rice
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作者 Jiaqi DING Ziang YI +2 位作者 Qi QIU Chenzhong JIN Taoli LIU 《Agricultural Biotechnology》 2025年第3期1-5,共5页
Kinesins are a superfamily of proteins widely present in eukaryotes,playing crucial roles in plant cell wall assembly,cell elongation regulation,gravity sensing,and fertility control.In this study,bioinformatics analy... Kinesins are a superfamily of proteins widely present in eukaryotes,playing crucial roles in plant cell wall assembly,cell elongation regulation,gravity sensing,and fertility control.In this study,bioinformatics analysis of the OsKMP2 gene(LOC_Os02g28850)was performed using online tools such as ExPASy-ProtParam,ProtScale,CD-search,and DNAMAN software.Additionally,qRT-PCR was employed to analyze the tissue expression pattern of OsKMP2.The results showed that the molecular weight of the OsKMP2 is 118.39728 kDa,and it is a hydrophilic and unstable acidic protein.Secondary structure prediction revealed that it primarily consists ofα-helices(69.45%),random coils(25.19%),and extended strands(5.36%).The gene was expressed in various rice tissues,with the highest expression level observed in leaves.These results indicate that the OsKMP2 gene exhibits high evolutionary conservation and functional diversity in rice. 展开更多
关键词 RICE OsKMP Tissue expression pattern Bioinformatics analysis
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Expression and characterization of a novel GH128 laminarinase OUC-Bs Lam26 harboring both hydrolyzing and transferring activities
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作者 Yueyang Dong Yongyi Quan +5 位作者 Hong Jiang Hamed I.Hamouda Zewei Lu Yimiao Chen Chengqiang Li Xiangzhao Mao 《Food Science and Human Wellness》 2025年第1期134-143,共10页
Laminarin oligosaccharides(LOSs)with a specific degree of polymerization prepared through the laminarin degradation via laminarinase present more significant nutritional functions and application values.Human intestin... Laminarin oligosaccharides(LOSs)with a specific degree of polymerization prepared through the laminarin degradation via laminarinase present more significant nutritional functions and application values.Human intestinal bacteria are promising potential producers of novel carbohydrate-active enzymes with unique properties.Here,a novel glycoside hydrolase family 128(GH128)laminarinase OUC-BsLam26 from the intestinal bacterium Bacteroides sp.CBA7301 was heterologously expressed and characterized.The recombinant OUC-BsLam26 with a molecular mass of 49.86 kDa exhibits highest activity(6.60 U/mg)at 45℃ and pH 6.0,which shows noticeable temperature and pH stability.The purified OUC-BsLam26 could degrade laminarin via an endo-type mode with the generation of laminaripentaose,laminaritetraose,laminaritriose,and laminaribiose,among them,laminaritetraose is the principal product,which accounts for 45.25% of the total products,which is significantly different from the reported GH128 laminarinases.The minimum recognition substrate of OUC-BsLam26 is laminarihexaose.Furthermore,OUC-BsLam26 also could catalyze the transglycosylation process with the production of some novel glycosides.Altogether,the intestinal bacterium Bacteroides sp.CBA7301 contains laminarinase with unique product composition and OUC-BsLam26 is a hopeful bio-catalyst with the potential to produce laminaritetraose and some novel glycosides. 展开更多
关键词 Laminarinase expression Laminarin oligosaccharides Hydrolytic pattern Novel glycosides
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