Quantitative trait loci （QTLs） for plant height in wheat （Triticum aestivum L.） were studied using a set of 168 doubled haploid （DH） lines, which were derived from the cross Huapei 3/Yumai 57. A genetic linkage ...Quantitative trait loci （QTLs） for plant height in wheat （Triticum aestivum L.） were studied using a set of 168 doubled haploid （DH） lines, which were derived from the cross Huapei 3/Yumai 57. A genetic linkage map was constructed using 283 SSR and 22 EST-SSR markers. The DH population and the parents were evaluated for wheat plant height in 2005 and 2006 in Tai＇an and 2006 in Suzhou. QTL analyses were performed using the software of QTLNetwork version 2.0 based on the mixed linear model. Four additive QTLs and five pairs of epistatic effects were detected, which were distributed on chromosomes 3A, 4B, 4D, 5A, 6A, 7B, and 7D. Among them, three additive QTLs and three pairs of epistatic QTLs showed QTL×environment interactions （QEs）. Two major QTLs, Qph4B and Qph4D, which accounted for 14.51% and 20.22% of the phenotypic variation, were located similar to the reported locations of the dwarfing genes Rhtl and Rht2, respectively. The Qph3A-2 with additive effect was not reported in previous linkage mapping studies. The total QTL effects detected for the plant height explained 85.04% of the phenotypic variation, with additive effects 46.07%, epistatic effects 19.89%, and QEs 19.09%. The results showed that both additive effects and epistatic effects were important genetic bases of wheat plant height, which were subjected to environmental modifications, and caused dramatic changes in phenotypic effects. The information obtained in this study will be useful for manipulating the QTLs for wheat plant height by molecular marker-assisted selection （MAS）.展开更多
QTLs for quantitative traits are influenced by genetic background(GB) and environment.Identification of QTL with GB independency and environmental stability is prerequisite for effective marker-assisted selection(MAS)...QTLs for quantitative traits are influenced by genetic background(GB) and environment.Identification of QTL with GB independency and environmental stability is prerequisite for effective marker-assisted selection(MAS). In this study, QTLs and QTL × environment interactions affecting grain yield per plant(GY) and its component traits, filled grain number per panicle(FGN), panicle number per plant(PN) and 1000-grain weight(TGW) across six environments were dissected using two sets of reciprocal introgression lines(ILs) derived from the cross Lemont × Teqing and SNP genotypic data. ANOVA indicated that the differences among genotypes and environments within each set of ILs were highly significant for all traits. A total of 72 distinct QTLs for GY and its component traits including 15 for GY, 25 for FGN, 18 for PN, and 29 for TGW were detected over the six environments. Most QTLs(87.4%) showed significant QTL × environment interactions(QEIs) and appeared to be more or less environment-specific. Among 72 QTLs, 15(20.8%) QTLs and 12(16.7%) QEIs were commonly identified in both backgrounds, indicating QTL especially QEI for yield and its component traits had strong GB effects. Four QTL regions affecting GY and its component traits, including S1269707–S4288071, S16661497–S17511092, and S35861863–S36341768 on chromosome 3, and S4134205–S7643153 on chromosome 5, were detected in both backgrounds and coincided with cloned genes for yield-related traits. These regions can be the targeted in rice breeding for high yield potential through MAS. Application of QTL main effects and their environmental interaction effects in MAS was discussed in detail.展开更多
To investigate genetic factors affecting wheat flour color traits,a linkage map was constructed using a recombinant inbred line （RIL） population derived from Jing 771×Pm 97034.Main,epistatic and QTL×enviro...To investigate genetic factors affecting wheat flour color traits,a linkage map was constructed using a recombinant inbred line （RIL） population derived from Jing 771×Pm 97034.Main,epistatic and QTL×environment （QE） interaction effects of quantitative trait loci （QTLs） controlling wheat flour color were studied by the mixed linear modeling of data collected from wheat RIL plants under three different environmental conditions.13 QTLs with additive effects and 55 pairs of QTLs with epistatic effects were detected for wheat flour color traits.The additive-additive interactions （AA） involved all of the wheat chromosomes except 3D.Epistasis accounted for more of the observed phenotypic variation than did the main effect QTLs （M-QTLs）.Our results suggested that dual-locus interactions are widespread in the wheat genome and play a critical role in determining wheat flour color characteristics.In this study,3 QTLs were identified to have QE interaction effects,one of them showing significant QE interaction in E2 environment.展开更多
QTLs for heading date of rice （Oryza sativa L.） with additive, epistatic, and QTL × environment （QE） interaction effects were studied using a mixed-model-based composite interval mapping （MCIM） method and a...QTLs for heading date of rice （Oryza sativa L.） with additive, epistatic, and QTL × environment （QE） interaction effects were studied using a mixed-model-based composite interval mapping （MCIM） method and a double haploid （DH） population derived from IR64/Azucena in two crop seasons. Fourteen QTLs conferring heading date in rice, which were distributed on ten chromosomes except for chromosomes 5 and 9, were detected. Among these QTLs, eight had single-locus effects, five pairs had double-locus interaction effects, and two single-loci and one pair of double-loci showed QTL × environment interaction effects. All predicted values of QTL effects varied from 1.179 days to 2.549 days, with corresponding contribution ratios of 1.04%-4.84%. On the basis of the effects of the QTLs, the total genetic effects on rice heading date for the two parents and the two superior lines were predicted, and the putative reasons for discrepancies between predicted values and observed values, and the genetic potentiality in the DH population for improvement of heading date were discussed. These results are in agreement with previous results for heading date in rice, and the results provide further information, which indicate that both epistasis and QE interaction are important genetic basis for determining heading date in rice.展开更多
To dissect the genetic mechanism of multi-seed pod in peanut, we explored the QTL/gene controlling multi-seed pod and analyzed the interaction effect of QTL and environment. Two hundred and forty eight recombinant inb...To dissect the genetic mechanism of multi-seed pod in peanut, we explored the QTL/gene controlling multi-seed pod and analyzed the interaction effect of QTL and environment. Two hundred and forty eight recombinant inbred lines(RIL) from cross Silihong × Jinonghei 3 were used as experimental materials planted in 8 environments from 2012 to 2017. Three methods of analysis were performed. These included individual environment analysis, joint analysis in multiple environments, and epistatic interaction analysis for multi-seed pod QTL. Phenotypic data and best linear unbiased prediction(BLUP) value of the ratio of multi-seed pods per plant(RMSP) were used for QTL mapping. Seven QTL detected by the individual environmental mapping analysis and were distributed on linkage groups 1, 6, 9, 14, 19(2), and 21. Each QTL explained 4.42%–11.51% of the phenotypic variation in multi-seed pod, and synergistic alleles of5 QTL were from the Silihong parent. One QTL, explaining 4.93% of the phenotypic variation was detected using BLUP data, and this QTL mapped in the same interval as q RMSP19.1 detected in the individual environment analysis. Seventeen additive QTL were identified by joint analysis across multiple environments. A total of 43 epistatic QTL were detected by ICIM-EPI mapping in the multiple environment trials(MET) module, and involved 57 loci. Two main-effect QTL related to multi-seed pod in peanut were filtered. We also found that RMSP had a highly significant positive correlation with pod yield per plant(PY), and epistatic effects were much more important than additive effects. These results provide theoretical guidance for the genetic improvement of germplasm resources and further fine mapping of related genes in peanut.展开更多
This study was conducted to generate genetic information in rice varieties based on a complete diallel crosses over two years. The results indicated that genotype effect was significant for all traits. Genotype ×...This study was conducted to generate genetic information in rice varieties based on a complete diallel crosses over two years. The results indicated that genotype effect was significant for all traits. Genotype × environment interaction effects were significant only for cooked grain length （CGL） and cooked grain shape （CGSH）. General combining ability （GCA） and specific combining ability （SCA） effects were significant for entire traits, which indicated the important roles of both additive and non-additive gene actions. GCA x environment interaction effects were significant for CGL, CGSH and grain elongation index （GEI）. In the controlling of the inheritance of milled grain shape （GSH）, milled grain width （MGW）, GEI, milled grain length （MGL）, CGSH and cooked grain width （CGW）, the additive gene effects were more important than non-additive one. The average degree of dominance was within the range of partial dominance for all of the traits. The narrow-sense heritability was ranged from 0.65 （GSH） to 0.36 （CGL）. GCA effects were significant for all of the parents in milled grain length and it was significant for some of the parents in other traits. The crosses of Deilmani × IRFAON-215 exhibited significant SCA for GEI. The positive mean of heterosis was observed for CGW. The highest maximum values of heterosis were revealed in GEI, flowed by GSH, MGW and CGW. GCA and MPV were significantly and positively correlated together for all traits.展开更多
Grain cooking and nutrient qualities are the most important components of rice(Oryza sativa L.)quality.A doubled haploid(DH)population from a cross between two japonica cultivars was used to examine the phenotypic val...Grain cooking and nutrient qualities are the most important components of rice(Oryza sativa L.)quality.A doubled haploid(DH)population from a cross between two japonica cultivars was used to examine the phenotypic values and potential QTLs for the quality traits.The cooking and nutrient quality traits,including the amylose content(AC),the gel consistency(CJC),the gelatinization temperature(GT),and the protein content(PC),in rice grown under upland and lowland environments were evaluated.Significant differences for AC,GC,GT,and PC between upland and lowland environments were detected.The phenotypic values of all four traits were higher under upland environment than lowland environment.The value of PC under upland environment was significantly higher(by 37.9%)than that under lowland environment.This suggests that upland cultivation had large effect on both cooking and nutrient qualifies.A total of seven QTLs and twelve pairs of QTLs were detected to have significant additive and epistatic effects for the four traits.Significant Q x E interaction effects of two QTLs and two pairs of QTLs were also discovered.The general contribution of additive QTLs ranged from 1.91%to 19.77%.The Q×E interactions of QTLs QGt3 and QAc6 accounted for 8.99%and 47.86%of the phenotypic variation,respectively,whereas those of the 2 pairs of epistatic QTLs,QAc6-QAcllb and QAc8-QAc9,accounted for 32.54%and 11.82%,respectively.Five QTLs QGt6b,QGt8,QGt11,QGcl,and QPc2,which had relatively high general contribution and no Q x E interactions,were selected to facilitate the upland rice grain quality breeding.展开更多
Using newly developed methods and software, association mapping was conducted for chromium content and total sugar in tobacco leaf, based on four-omics datasets. Our objective was to collect data on genotype and pheno...Using newly developed methods and software, association mapping was conducted for chromium content and total sugar in tobacco leaf, based on four-omics datasets. Our objective was to collect data on genotype and phenotype for 60 leaf samples at four developmental stages, from three plant architectural positions and for three cultivars that were grown in two locations. Association mapping was conducted to detect genetic variants at quantitative trait SNP(QTS) loci, quantitative trait transcript(QTT) differences,quantitative trait protein(QTP) variability, and quantitative trait metabolite(QTM) changes,which can be summarized as QTX locus variation. The total heritabilities of the four-omics loci for both traits tested were 23.60% for epistasis and 15.26% for treatment interaction.Epistasis and environment × treatment interaction had important impacts on complex traits at all-omics levels. For decreasing chromium content and increasing total sugar in tobacco leaf, six methylated loci can be directly used for marker-assisted selection, and expression of ten QTTs, seven QTPs and six QTMs can be modified by selection or cultivation.展开更多
Mega-urban agglomerations are strategic core areas for national economic development and the main regions of new urbanization. They also have important roles in shifting the global economic center of gravity to China....Mega-urban agglomerations are strategic core areas for national economic development and the main regions of new urbanization. They also have important roles in shifting the global economic center of gravity to China. However, the development of mega-urban agglomerations has triggered the interactive coercion between resources and the eco-envi- ronment. The interactive coupled effects between urbanization and the eco-environment in mega-urban agglomerations represent frontier and high-priority research topics in the field of Earth system science over the next decade. In this paper, we carried out systematic theo- retical analysis of the interactive coupling mechanisms and coercing effects between ur- banization and the eco-environment in mega-urban agglomerations. In detail, we analyzed the nonlinear-coupled relationships and the coupling characteristics between natural and human elements in mega-urban agglomerations. We also investigated the interactive coercion intensities between internal and external elements, and the mechanisms and patterns of local couplings and telecouplings in mega-urban agglomeration systems, which are affected by key internal and external control elements. In addition, we proposed the interactive coupling theory on urbanization and the eco-environment in mega-urban agglomerations. Furthermore we established a spatiotemporal dynamic coupling model with multi-element, multi-scale, multi-scenario, multi-module and multi-agent integrations, which can be used to develop an intelligent decision support system for sustainable development of mega-urban agglomera- tions. In general, our research may provide theoretical guidance and method support to solve problems related to mega-urban agglomerations and maintain their sustainable development.展开更多
Global urbanization is exerting severe stress and having far-reaching impacts on the eco-environment, and yet there exists a complex non-linear coupling relationship between the two. Research on the interactive coupli...Global urbanization is exerting severe stress and having far-reaching impacts on the eco-environment, and yet there exists a complex non-linear coupling relationship between the two. Research on the interactive coupling effect between urbanization and the eco-environment will be a popular area of study and frontier in international earth system science and sustainability science in the next 10 years, while also being a high-priority research topic of particular interest to international organizations. This paper systematically collates and summarizes the international progress made in research on interactive coupling theory, coupling relationships, coupling mechanisms, coupling laws, coupling thresholds, coupling models and coupling optimization decision support systems. The research shows that urbanization and eco-environment interactive coupling theories include the Kuznets curve theory, telecoupling theory, planetary boundaries theory, footprint family theory and urban metabolism theory; most research on interactive coupling relationships is concerned with single- element coupling relationships, such as those between urbanization and water, land, atmosphere, climate change, ecosystems and biodiversity; the majority of research on interactive coupling mechanisms and laws focuses on five research paradigms, including coupled human and nature systems, complex social-ecological systems, urban ecosystems, social-economic-natural complex ecosystems, and urbanization development and eco-environment constraint ring; the majority of interactive coupling simulations use STIRPAT models, coupling degree models, multi-agent system models and big data urban computer models; and research has been carried out on urbanization and eco-environment coupling thresholds, coercing risk and optimal decision support systems. An objective evaluation of progress in international research on interactive coupling between urbanization and the eco-environment suggests that there are six main research focal points and six areas lacking research： a lot of research exists on macroscopic coupling effects, with little research on urban agglomeration and scale coupling effects; considerable research exists on sin-gle-dimension coupling effects, with little on multiple-dimension coupling effects; a great deal exists on ＂one-to-one＂ dual- element coupling effects, with little on ＂many-to-many＂ multiple-element coupling effects; a lot exists on positive feedback coupling effects, and little on negative feedback coupling effects; a great deal exists on empirical coupling effects, and little on theoretical coupling effects; a great deal exists on the use of simple quantitative methods, and little on using integrated simulation methods. Future studies should focus on coupling effects between urbanization in urban agglomerations and the eco-environment, spatial scale coupling effects, multi-dimensional coupling effects, telecoupling effects, ＂one-to-many＂ and ＂many-to-many＂ element coupling effects, and positive and negative feedback coupling effects. There is also a need to strengthen the development and application of dynamic models for multi-element,-scale,-scenario,-module and-agent integrated spatiotemporal coupling systems and further improve theoretical innovations in coupling effect research and integrate and form complete and diverse coupling theoretical systems.展开更多
The distributions of species in their habitats are constantly changing. This phenomenon is thought to be determined by species’ environmental tolerance and biotic interactions for limited resources and space. Consequ...The distributions of species in their habitats are constantly changing. This phenomenon is thought to be determined by species’ environmental tolerance and biotic interactions for limited resources and space. Consequently, predicting the future distribution of species is a major challenge in ecology. To address this problem, we use mathematical model to study the combined effects of biotic interactions (e.g. competition) and environmental factors on multiple species community assembly in a heterogenous environment. To gain insights into the dynamics of this ecological system, we perform both analytical and numerical analyses of the range margins of the species. We observe that the range margins of the species can be influenced by biotic interactions combined with environmental factors. Depending on the strength of biotic interactions, our model exhibits coexistence of species and priority effects;mediated by weak and intense biotic interactions respectively. We also show the existence of bifurcation points (i.e. the threshold values of competition coefficient) which lead to the presence—absence of different species. Thus, we suggest that adequate knowledge of biotic interactions and changes in the environments is important for effective maintenance of biodiversity and conservation management.展开更多
Sorghum [<i><span style="font-family:Verdana;">Sorghum bicolor</span></i><span style="font-family:Verdana;"> (L.) Moench] is a high-yielding, nutrient-use efficient, a...Sorghum [<i><span style="font-family:Verdana;">Sorghum bicolor</span></i><span style="font-family:Verdana;"> (L.) Moench] is a high-yielding, nutrient-use efficient, and drought tolerant crop that can be cultivated on over 80 per cent of the world’s agricultural land. However, a number of biotic and abiotic factors are limiting grain yield increase. Diseases (leaf and grain) are considered as one of the major biotic factors hindering sorghum productivity in the highland and intermediate altitude sorghum growing areas of Ethiopia. In addition, the yield performance of crop varieties is highly influenced by genotype × environment (G × E) interaction which is the major focus of researchers while generating improved varieties. In Ethiopia, high yielding and stable varieties that withstand biotic stress in the highland areas are limited. In line with this, the yield performance of 21 sorghum genotypes and one standard check were evaluated across 14 environments with the objectives of estimating magnitude G </span><span style="font-family:Verdana;">× E interaction for grain yield and to identify high yielder and stable genotypes across environments. The experiment was laid out using Randomized Complete Block Design with three replications in all environments. The combined analysis of variance across environments revealed highly significant differences among environments, genotypes and G × E interactions of grain yield suggesting further analysis of the G × E interaction. The results of the combined AMMI analysis of variance indicated that the total variation in grain yield was attributed to environments effects 71.21%, genotypes effects 4.52% and G × E interactions effects 24.27% indicating the major sources of variation. Genotypes 2006AN7010 and 2006AN7011 were high yielder and they were stable across environments and one variety has been released for commercial production and can be used as parental lines for genetic improvement in the sorghum improvement program. In general, this research study revealed the importance of evaluating sorghum genotypes for their yield and stability across diverse highland areas of Ethiopia before releasing for commercial production.</span>展开更多
Leaves are the main organs of photosynthesis in green plants. Leaf area plays a vital role in dry matter accumulation and grain yield in maize （Zea mays L.）. Thus, investigating the genetic basis of leaf area will a...Leaves are the main organs of photosynthesis in green plants. Leaf area plays a vital role in dry matter accumulation and grain yield in maize （Zea mays L.）. Thus, investigating the genetic basis of leaf area will aid efforts to breed maize with high yield. In this study, a total of 150 F7 recombinant inbred lines （RILs） derived from a cross between the maize lines Xu 178 and K12 were used to evaluate three ear-leaves area （TELA） under multi-environments. Inclusive composite interval map- ping （ICIM） was used to identify quantitative trait loci （QTLs） for TELA under a single environment and estimated breeding value （EBV）. A total of eight QTLs were detected under a single environmental condition, and four QTLs were identified for EBV which also can be detected in single environment. This indicated that the EBV-detected QTLs have high genetic stability. A major QTL （qTELA_2-9） located in chromosome bin 2.04/2.05 could be detected in four environments and has a high phenotypic contribution rate （ranging from 10.79 to 16.51%） that making it a good target for molecular breeding. In addition, joint analysis was used to reveal the genetic basis of leaf area in six environments. In total, six QTLxenvironment interactions and nine epistatic interactions were identified. Our results reveal that the genetic basis of the leaf area is not only mainly determined by additive effects, but also affected by epistatic effects environmental interaction effects.展开更多
Taking the yield in the second group of Guizhou silage maize regional test in 2019 as data information, 8 experimental sites and 12 silage maize varieties as experimental objects, the interaction effect between gene a...Taking the yield in the second group of Guizhou silage maize regional test in 2019 as data information, 8 experimental sites and 12 silage maize varieties as experimental objects, the interaction effect between gene and environment was analyzed by using AMMI model. The results showed that the average fresh weight yield of each variety was 3 199.5~3 976.6 kg/667m^(2), among them, 5 varieties had an increase in the yield. Variety variation accounted for 10.51% of the total variation;experimental site variation accounted for 63.22% of the total variation;interaction effect variation between gene and environment accounted for 26.28% of the total variation;IPCA1 and IPCA2 variation accounted for 50.7% and 31.2% of the interaction variation, respectively;IPCA3 variation accounted for 7.25% of the interaction variation. g_4, g_8, g_9, g_10, g_11 and g_12 had better adaptability to e_1, e_2, e_6 and e_7;while g_1, g_2, g_3, g_5, g_6 and g_7 had better adaptability to e_3, e_4, e_5 and e_8. In consideration of yield, g_1(Huinongqing 2) and g_9(Xinyu 666) were silage maize varieties with high and stable yield;g_3(Hemuyu 905), g_8(Wuhuayu 3) and g_11(Liangdu 191) had general stability, and their yield was higher than that of the control;g_12(Jinduyu 999) had the worst stability and low yield.展开更多
To improve multi-environmental trial(MET)analysis,a compound method—which combines factor analytic(FA)model with additive main effect and multiplicative interaction(AMMI)and genotype main effect plus genotype-by-envi...To improve multi-environmental trial(MET)analysis,a compound method—which combines factor analytic(FA)model with additive main effect and multiplicative interaction(AMMI)and genotype main effect plus genotype-by-environment interaction(GGE)biplot—was conducted in this study.The diameter at breast height of 36 open-pollinated(OP)families of Pinus taeda at six sites in South China was used as a raw dataset.The best linear unbiased prediction(BLUP)data of all individual trees in each site was obtained by fitting the spatial effects with the FA method from raw data.The raw data and BLUP data were analyzed and compared by using the AMMI and GGE biplot.BLUP results showed that the six sites were heterogeneous and spatial variation could be effectively fitted by spatial analysis with the FA method.AMMI analysis identified that two datasets had highly significant effects on the site,family,and their interactions,while BLUP data had a smaller residual error,but higher variation explaining ability and more credible stability than raw data.GGE biplot results revealed that raw data and BLUP data had different results in mega-environment delineation,test-environment evaluation,and genotype evaluation.In addition,BLUP data results were more reasonable due to the stronger analytical ability of the first two principal components.Our study suggests that the compound method combing the FA method with the AMMI and GGE biplot could improve the analysis result of MET data in Pinus teada as it was more reliable than direct AMMI and GGE biplot analysis on raw data.展开更多
To provide a theoretical basis for further improvement of Brassica napus yield, additive dominance with additive - by - additive epistatic effects （ ADAA） genetic model and a 6 X 8 partial dial- lel cross des...To provide a theoretical basis for further improvement of Brassica napus yield, additive dominance with additive - by - additive epistatic effects （ ADAA） genetic model and a 6 X 8 partial dial- lel cross design were used to analyze the genetic effects and correlations of five yield related traits of 14 excellent Brassica napus parental lines and their 46 and F2 populations. The results showed that silique density （SD） , siliques per plant （SPP） , seeds per silique （SPS） and thousand - seed weight （TSW） exhibited not only additive and dominant effects, but also significant epistatic effects. The dominant effects of all five yield - related traits were obviously greater than their additive effects and epistatic effects. Yield per plant （YPP） showed significant genetic correlation with SD, SPP and SPS, and the main component of the genetic correlation was the dominance correlation. SPP and SPS both showed a significant negative correlation with TSW. The SD of rapeseed was genetically correlated with all three components of yield to a certain extent, and there were different components of genetic effects positively correlated with the three yield components, indicating that SD is a potential trait to reconcile the conflict between TSW and SPP as well as SPS.展开更多
基金This work was supported by the National Natural Science Foundation of China(No.30471082)the Hi-Tech Research and Development(863)Program of China(No.2006AA100101 and 2006AA10Z1E9).
文摘Quantitative trait loci （QTLs） for plant height in wheat （Triticum aestivum L.） were studied using a set of 168 doubled haploid （DH） lines, which were derived from the cross Huapei 3/Yumai 57. A genetic linkage map was constructed using 283 SSR and 22 EST-SSR markers. The DH population and the parents were evaluated for wheat plant height in 2005 and 2006 in Tai＇an and 2006 in Suzhou. QTL analyses were performed using the software of QTLNetwork version 2.0 based on the mixed linear model. Four additive QTLs and five pairs of epistatic effects were detected, which were distributed on chromosomes 3A, 4B, 4D, 5A, 6A, 7B, and 7D. Among them, three additive QTLs and three pairs of epistatic QTLs showed QTL×environment interactions （QEs）. Two major QTLs, Qph4B and Qph4D, which accounted for 14.51% and 20.22% of the phenotypic variation, were located similar to the reported locations of the dwarfing genes Rhtl and Rht2, respectively. The Qph3A-2 with additive effect was not reported in previous linkage mapping studies. The total QTL effects detected for the plant height explained 85.04% of the phenotypic variation, with additive effects 46.07%, epistatic effects 19.89%, and QEs 19.09%. The results showed that both additive effects and epistatic effects were important genetic bases of wheat plant height, which were subjected to environmental modifications, and caused dramatic changes in phenotypic effects. The information obtained in this study will be useful for manipulating the QTLs for wheat plant height by molecular marker-assisted selection （MAS）.
基金funded by the National Natural Science Foundation (30570996)the Program of Introducing International Super Agricultural Science and Technology (from the Chinese Ministry of Agriculture (the "948" 483 Project, 2010-G2B), 484the Shenzhen Peacock Plan (20130415095710361)
文摘QTLs for quantitative traits are influenced by genetic background(GB) and environment.Identification of QTL with GB independency and environmental stability is prerequisite for effective marker-assisted selection(MAS). In this study, QTLs and QTL × environment interactions affecting grain yield per plant(GY) and its component traits, filled grain number per panicle(FGN), panicle number per plant(PN) and 1000-grain weight(TGW) across six environments were dissected using two sets of reciprocal introgression lines(ILs) derived from the cross Lemont × Teqing and SNP genotypic data. ANOVA indicated that the differences among genotypes and environments within each set of ILs were highly significant for all traits. A total of 72 distinct QTLs for GY and its component traits including 15 for GY, 25 for FGN, 18 for PN, and 29 for TGW were detected over the six environments. Most QTLs(87.4%) showed significant QTL × environment interactions(QEIs) and appeared to be more or less environment-specific. Among 72 QTLs, 15(20.8%) QTLs and 12(16.7%) QEIs were commonly identified in both backgrounds, indicating QTL especially QEI for yield and its component traits had strong GB effects. Four QTL regions affecting GY and its component traits, including S1269707–S4288071, S16661497–S17511092, and S35861863–S36341768 on chromosome 3, and S4134205–S7643153 on chromosome 5, were detected in both backgrounds and coincided with cloned genes for yield-related traits. These regions can be the targeted in rice breeding for high yield potential through MAS. Application of QTL main effects and their environmental interaction effects in MAS was discussed in detail.
基金funded by a grant from the National Natural Science Foundation of China (30471076)
文摘To investigate genetic factors affecting wheat flour color traits,a linkage map was constructed using a recombinant inbred line （RIL） population derived from Jing 771×Pm 97034.Main,epistatic and QTL×environment （QE） interaction effects of quantitative trait loci （QTLs） controlling wheat flour color were studied by the mixed linear modeling of data collected from wheat RIL plants under three different environmental conditions.13 QTLs with additive effects and 55 pairs of QTLs with epistatic effects were detected for wheat flour color traits.The additive-additive interactions （AA） involved all of the wheat chromosomes except 3D.Epistasis accounted for more of the observed phenotypic variation than did the main effect QTLs （M-QTLs）.Our results suggested that dual-locus interactions are widespread in the wheat genome and play a critical role in determining wheat flour color characteristics.In this study,3 QTLs were identified to have QE interaction effects,one of them showing significant QE interaction in E2 environment.
文摘QTLs for heading date of rice （Oryza sativa L.） with additive, epistatic, and QTL × environment （QE） interaction effects were studied using a mixed-model-based composite interval mapping （MCIM） method and a double haploid （DH） population derived from IR64/Azucena in two crop seasons. Fourteen QTLs conferring heading date in rice, which were distributed on ten chromosomes except for chromosomes 5 and 9, were detected. Among these QTLs, eight had single-locus effects, five pairs had double-locus interaction effects, and two single-loci and one pair of double-loci showed QTL × environment interaction effects. All predicted values of QTL effects varied from 1.179 days to 2.549 days, with corresponding contribution ratios of 1.04%-4.84%. On the basis of the effects of the QTLs, the total genetic effects on rice heading date for the two parents and the two superior lines were predicted, and the putative reasons for discrepancies between predicted values and observed values, and the genetic potentiality in the DH population for improvement of heading date were discussed. These results are in agreement with previous results for heading date in rice, and the results provide further information, which indicate that both epistasis and QE interaction are important genetic basis for determining heading date in rice.
基金supported by the China Agriculture Research System(CARS-13)the National Natural Science Foundation of China(31771833)+1 种基金the Hebei Province Science and Technology Support Program(16226301D)Key Projects of Science and Technology Research in Higher Education Institution of Hebei province(ZD2015056)
文摘To dissect the genetic mechanism of multi-seed pod in peanut, we explored the QTL/gene controlling multi-seed pod and analyzed the interaction effect of QTL and environment. Two hundred and forty eight recombinant inbred lines(RIL) from cross Silihong × Jinonghei 3 were used as experimental materials planted in 8 environments from 2012 to 2017. Three methods of analysis were performed. These included individual environment analysis, joint analysis in multiple environments, and epistatic interaction analysis for multi-seed pod QTL. Phenotypic data and best linear unbiased prediction(BLUP) value of the ratio of multi-seed pods per plant(RMSP) were used for QTL mapping. Seven QTL detected by the individual environmental mapping analysis and were distributed on linkage groups 1, 6, 9, 14, 19(2), and 21. Each QTL explained 4.42%–11.51% of the phenotypic variation in multi-seed pod, and synergistic alleles of5 QTL were from the Silihong parent. One QTL, explaining 4.93% of the phenotypic variation was detected using BLUP data, and this QTL mapped in the same interval as q RMSP19.1 detected in the individual environment analysis. Seventeen additive QTL were identified by joint analysis across multiple environments. A total of 43 epistatic QTL were detected by ICIM-EPI mapping in the multiple environment trials(MET) module, and involved 57 loci. Two main-effect QTL related to multi-seed pod in peanut were filtered. We also found that RMSP had a highly significant positive correlation with pod yield per plant(PY), and epistatic effects were much more important than additive effects. These results provide theoretical guidance for the genetic improvement of germplasm resources and further fine mapping of related genes in peanut.
基金The projcct was carried out in the farm and laboratory of Rice Research Institute of Iran(RRII)in Rasht
文摘This study was conducted to generate genetic information in rice varieties based on a complete diallel crosses over two years. The results indicated that genotype effect was significant for all traits. Genotype × environment interaction effects were significant only for cooked grain length （CGL） and cooked grain shape （CGSH）. General combining ability （GCA） and specific combining ability （SCA） effects were significant for entire traits, which indicated the important roles of both additive and non-additive gene actions. GCA x environment interaction effects were significant for CGL, CGSH and grain elongation index （GEI）. In the controlling of the inheritance of milled grain shape （GSH）, milled grain width （MGW）, GEI, milled grain length （MGL）, CGSH and cooked grain width （CGW）, the additive gene effects were more important than non-additive one. The average degree of dominance was within the range of partial dominance for all of the traits. The narrow-sense heritability was ranged from 0.65 （GSH） to 0.36 （CGL）. GCA effects were significant for all of the parents in milled grain length and it was significant for some of the parents in other traits. The crosses of Deilmani × IRFAON-215 exhibited significant SCA for GEI. The positive mean of heterosis was observed for CGW. The highest maximum values of heterosis were revealed in GEI, flowed by GSH, MGW and CGW. GCA and MPV were significantly and positively correlated together for all traits.
基金This work was supported by the State Key Basic Research and Development Plan of China(973)the Hi-Tech Research and De-velopment Program of China(863)National Natural Science Foundation of China.
文摘Grain cooking and nutrient qualities are the most important components of rice(Oryza sativa L.)quality.A doubled haploid(DH)population from a cross between two japonica cultivars was used to examine the phenotypic values and potential QTLs for the quality traits.The cooking and nutrient quality traits,including the amylose content(AC),the gel consistency(CJC),the gelatinization temperature(GT),and the protein content(PC),in rice grown under upland and lowland environments were evaluated.Significant differences for AC,GC,GT,and PC between upland and lowland environments were detected.The phenotypic values of all four traits were higher under upland environment than lowland environment.The value of PC under upland environment was significantly higher(by 37.9%)than that under lowland environment.This suggests that upland cultivation had large effect on both cooking and nutrient qualifies.A total of seven QTLs and twelve pairs of QTLs were detected to have significant additive and epistatic effects for the four traits.Significant Q x E interaction effects of two QTLs and two pairs of QTLs were also discovered.The general contribution of additive QTLs ranged from 1.91%to 19.77%.The Q×E interactions of QTLs QGt3 and QAc6 accounted for 8.99%and 47.86%of the phenotypic variation,respectively,whereas those of the 2 pairs of epistatic QTLs,QAc6-QAcllb and QAc8-QAc9,accounted for 32.54%and 11.82%,respectively.Five QTLs QGt6b,QGt8,QGt11,QGcl,and QPc2,which had relatively high general contribution and no Q x E interactions,were selected to facilitate the upland rice grain quality breeding.
基金supported by the National Basic Research Program of China (2011CB109306 and 2009CB118404)the Program of Introducing Talents of Discipline to Universities of China ("111" Project, B06014)Research Programs (CNTC-D2011100, CNTC-[2012]146, NY-[2011]3047, QKHRZ [2013] 02)
文摘Using newly developed methods and software, association mapping was conducted for chromium content and total sugar in tobacco leaf, based on four-omics datasets. Our objective was to collect data on genotype and phenotype for 60 leaf samples at four developmental stages, from three plant architectural positions and for three cultivars that were grown in two locations. Association mapping was conducted to detect genetic variants at quantitative trait SNP(QTS) loci, quantitative trait transcript(QTT) differences,quantitative trait protein(QTP) variability, and quantitative trait metabolite(QTM) changes,which can be summarized as QTX locus variation. The total heritabilities of the four-omics loci for both traits tested were 23.60% for epistasis and 15.26% for treatment interaction.Epistasis and environment × treatment interaction had important impacts on complex traits at all-omics levels. For decreasing chromium content and increasing total sugar in tobacco leaf, six methylated loci can be directly used for marker-assisted selection, and expression of ten QTTs, seven QTPs and six QTMs can be modified by selection or cultivation.
基金The Major Program of National Natural Science Foundation of China, No.41590840, No.41590842
文摘Mega-urban agglomerations are strategic core areas for national economic development and the main regions of new urbanization. They also have important roles in shifting the global economic center of gravity to China. However, the development of mega-urban agglomerations has triggered the interactive coercion between resources and the eco-envi- ronment. The interactive coupled effects between urbanization and the eco-environment in mega-urban agglomerations represent frontier and high-priority research topics in the field of Earth system science over the next decade. In this paper, we carried out systematic theo- retical analysis of the interactive coupling mechanisms and coercing effects between ur- banization and the eco-environment in mega-urban agglomerations. In detail, we analyzed the nonlinear-coupled relationships and the coupling characteristics between natural and human elements in mega-urban agglomerations. We also investigated the interactive coercion intensities between internal and external elements, and the mechanisms and patterns of local couplings and telecouplings in mega-urban agglomeration systems, which are affected by key internal and external control elements. In addition, we proposed the interactive coupling theory on urbanization and the eco-environment in mega-urban agglomerations. Furthermore we established a spatiotemporal dynamic coupling model with multi-element, multi-scale, multi-scenario, multi-module and multi-agent integrations, which can be used to develop an intelligent decision support system for sustainable development of mega-urban agglomera- tions. In general, our research may provide theoretical guidance and method support to solve problems related to mega-urban agglomerations and maintain their sustainable development.
基金Major Program of the National Natural Science Foundation of China,No.41590840,No.41590842
文摘Global urbanization is exerting severe stress and having far-reaching impacts on the eco-environment, and yet there exists a complex non-linear coupling relationship between the two. Research on the interactive coupling effect between urbanization and the eco-environment will be a popular area of study and frontier in international earth system science and sustainability science in the next 10 years, while also being a high-priority research topic of particular interest to international organizations. This paper systematically collates and summarizes the international progress made in research on interactive coupling theory, coupling relationships, coupling mechanisms, coupling laws, coupling thresholds, coupling models and coupling optimization decision support systems. The research shows that urbanization and eco-environment interactive coupling theories include the Kuznets curve theory, telecoupling theory, planetary boundaries theory, footprint family theory and urban metabolism theory; most research on interactive coupling relationships is concerned with single- element coupling relationships, such as those between urbanization and water, land, atmosphere, climate change, ecosystems and biodiversity; the majority of research on interactive coupling mechanisms and laws focuses on five research paradigms, including coupled human and nature systems, complex social-ecological systems, urban ecosystems, social-economic-natural complex ecosystems, and urbanization development and eco-environment constraint ring; the majority of interactive coupling simulations use STIRPAT models, coupling degree models, multi-agent system models and big data urban computer models; and research has been carried out on urbanization and eco-environment coupling thresholds, coercing risk and optimal decision support systems. An objective evaluation of progress in international research on interactive coupling between urbanization and the eco-environment suggests that there are six main research focal points and six areas lacking research： a lot of research exists on macroscopic coupling effects, with little research on urban agglomeration and scale coupling effects; considerable research exists on sin-gle-dimension coupling effects, with little on multiple-dimension coupling effects; a great deal exists on ＂one-to-one＂ dual- element coupling effects, with little on ＂many-to-many＂ multiple-element coupling effects; a lot exists on positive feedback coupling effects, and little on negative feedback coupling effects; a great deal exists on empirical coupling effects, and little on theoretical coupling effects; a great deal exists on the use of simple quantitative methods, and little on using integrated simulation methods. Future studies should focus on coupling effects between urbanization in urban agglomerations and the eco-environment, spatial scale coupling effects, multi-dimensional coupling effects, telecoupling effects, ＂one-to-many＂ and ＂many-to-many＂ element coupling effects, and positive and negative feedback coupling effects. There is also a need to strengthen the development and application of dynamic models for multi-element,-scale,-scenario,-module and-agent integrated spatiotemporal coupling systems and further improve theoretical innovations in coupling effect research and integrate and form complete and diverse coupling theoretical systems.
文摘The distributions of species in their habitats are constantly changing. This phenomenon is thought to be determined by species’ environmental tolerance and biotic interactions for limited resources and space. Consequently, predicting the future distribution of species is a major challenge in ecology. To address this problem, we use mathematical model to study the combined effects of biotic interactions (e.g. competition) and environmental factors on multiple species community assembly in a heterogenous environment. To gain insights into the dynamics of this ecological system, we perform both analytical and numerical analyses of the range margins of the species. We observe that the range margins of the species can be influenced by biotic interactions combined with environmental factors. Depending on the strength of biotic interactions, our model exhibits coexistence of species and priority effects;mediated by weak and intense biotic interactions respectively. We also show the existence of bifurcation points (i.e. the threshold values of competition coefficient) which lead to the presence—absence of different species. Thus, we suggest that adequate knowledge of biotic interactions and changes in the environments is important for effective maintenance of biodiversity and conservation management.
文摘Sorghum [<i><span style="font-family:Verdana;">Sorghum bicolor</span></i><span style="font-family:Verdana;"> (L.) Moench] is a high-yielding, nutrient-use efficient, and drought tolerant crop that can be cultivated on over 80 per cent of the world’s agricultural land. However, a number of biotic and abiotic factors are limiting grain yield increase. Diseases (leaf and grain) are considered as one of the major biotic factors hindering sorghum productivity in the highland and intermediate altitude sorghum growing areas of Ethiopia. In addition, the yield performance of crop varieties is highly influenced by genotype × environment (G × E) interaction which is the major focus of researchers while generating improved varieties. In Ethiopia, high yielding and stable varieties that withstand biotic stress in the highland areas are limited. In line with this, the yield performance of 21 sorghum genotypes and one standard check were evaluated across 14 environments with the objectives of estimating magnitude G </span><span style="font-family:Verdana;">× E interaction for grain yield and to identify high yielder and stable genotypes across environments. The experiment was laid out using Randomized Complete Block Design with three replications in all environments. The combined analysis of variance across environments revealed highly significant differences among environments, genotypes and G × E interactions of grain yield suggesting further analysis of the G × E interaction. The results of the combined AMMI analysis of variance indicated that the total variation in grain yield was attributed to environments effects 71.21%, genotypes effects 4.52% and G × E interactions effects 24.27% indicating the major sources of variation. Genotypes 2006AN7010 and 2006AN7011 were high yielder and they were stable across environments and one variety has been released for commercial production and can be used as parental lines for genetic improvement in the sorghum improvement program. In general, this research study revealed the importance of evaluating sorghum genotypes for their yield and stability across diverse highland areas of Ethiopia before releasing for commercial production.</span>
基金supported financially by the National Natu ral Science Foundation of China(31301830)the Natural Science Basic Research Plan in Shaanxi Province of China(2014JQ3108)+1 种基金the Special Fund for Basic Research in Northwest A&F University,China(QN2012001)the Chinese Scholarship Council(CSC)
文摘Leaves are the main organs of photosynthesis in green plants. Leaf area plays a vital role in dry matter accumulation and grain yield in maize （Zea mays L.）. Thus, investigating the genetic basis of leaf area will aid efforts to breed maize with high yield. In this study, a total of 150 F7 recombinant inbred lines （RILs） derived from a cross between the maize lines Xu 178 and K12 were used to evaluate three ear-leaves area （TELA） under multi-environments. Inclusive composite interval map- ping （ICIM） was used to identify quantitative trait loci （QTLs） for TELA under a single environment and estimated breeding value （EBV）. A total of eight QTLs were detected under a single environmental condition, and four QTLs were identified for EBV which also can be detected in single environment. This indicated that the EBV-detected QTLs have high genetic stability. A major QTL （qTELA_2-9） located in chromosome bin 2.04/2.05 could be detected in four environments and has a high phenotypic contribution rate （ranging from 10.79 to 16.51%） that making it a good target for molecular breeding. In addition, joint analysis was used to reveal the genetic basis of leaf area in six environments. In total, six QTLxenvironment interactions and nine epistatic interactions were identified. Our results reveal that the genetic basis of the leaf area is not only mainly determined by additive effects, but also affected by epistatic effects environmental interaction effects.
基金Supported by National Modern Agricultural Industrial Technology System。
文摘Taking the yield in the second group of Guizhou silage maize regional test in 2019 as data information, 8 experimental sites and 12 silage maize varieties as experimental objects, the interaction effect between gene and environment was analyzed by using AMMI model. The results showed that the average fresh weight yield of each variety was 3 199.5~3 976.6 kg/667m^(2), among them, 5 varieties had an increase in the yield. Variety variation accounted for 10.51% of the total variation;experimental site variation accounted for 63.22% of the total variation;interaction effect variation between gene and environment accounted for 26.28% of the total variation;IPCA1 and IPCA2 variation accounted for 50.7% and 31.2% of the interaction variation, respectively;IPCA3 variation accounted for 7.25% of the interaction variation. g_4, g_8, g_9, g_10, g_11 and g_12 had better adaptability to e_1, e_2, e_6 and e_7;while g_1, g_2, g_3, g_5, g_6 and g_7 had better adaptability to e_3, e_4, e_5 and e_8. In consideration of yield, g_1(Huinongqing 2) and g_9(Xinyu 666) were silage maize varieties with high and stable yield;g_3(Hemuyu 905), g_8(Wuhuayu 3) and g_11(Liangdu 191) had general stability, and their yield was higher than that of the control;g_12(Jinduyu 999) had the worst stability and low yield.
基金supported by State Key Laboratory of Tree Genetics and Breeding(Northeast Forestry University)(K2013204)co-financed with NSFC project(31470673)Guangdong Science and Technology Planning Project(2016B070701008)
文摘To improve multi-environmental trial(MET)analysis,a compound method—which combines factor analytic(FA)model with additive main effect and multiplicative interaction(AMMI)and genotype main effect plus genotype-by-environment interaction(GGE)biplot—was conducted in this study.The diameter at breast height of 36 open-pollinated(OP)families of Pinus taeda at six sites in South China was used as a raw dataset.The best linear unbiased prediction(BLUP)data of all individual trees in each site was obtained by fitting the spatial effects with the FA method from raw data.The raw data and BLUP data were analyzed and compared by using the AMMI and GGE biplot.BLUP results showed that the six sites were heterogeneous and spatial variation could be effectively fitted by spatial analysis with the FA method.AMMI analysis identified that two datasets had highly significant effects on the site,family,and their interactions,while BLUP data had a smaller residual error,but higher variation explaining ability and more credible stability than raw data.GGE biplot results revealed that raw data and BLUP data had different results in mega-environment delineation,test-environment evaluation,and genotype evaluation.In addition,BLUP data results were more reasonable due to the stronger analytical ability of the first two principal components.Our study suggests that the compound method combing the FA method with the AMMI and GGE biplot could improve the analysis result of MET data in Pinus teada as it was more reliable than direct AMMI and GGE biplot analysis on raw data.
基金This research was supported by the National Basic Research Program of China （ 973 Program, 2011CB109302）；the National High - Tech R＆D Pro-gram of China （863 Program, 2011AA10A104, 2012AA101107） ； Natural Science Foundation of Hu-bei Province （2015CFA103） ； Hubei Agricultural Science and Technology Innovation Center.
文摘To provide a theoretical basis for further improvement of Brassica napus yield, additive dominance with additive - by - additive epistatic effects （ ADAA） genetic model and a 6 X 8 partial dial- lel cross design were used to analyze the genetic effects and correlations of five yield related traits of 14 excellent Brassica napus parental lines and their 46 and F2 populations. The results showed that silique density （SD） , siliques per plant （SPP） , seeds per silique （SPS） and thousand - seed weight （TSW） exhibited not only additive and dominant effects, but also significant epistatic effects. The dominant effects of all five yield - related traits were obviously greater than their additive effects and epistatic effects. Yield per plant （YPP） showed significant genetic correlation with SD, SPP and SPS, and the main component of the genetic correlation was the dominance correlation. SPP and SPS both showed a significant negative correlation with TSW. The SD of rapeseed was genetically correlated with all three components of yield to a certain extent, and there were different components of genetic effects positively correlated with the three yield components, indicating that SD is a potential trait to reconcile the conflict between TSW and SPP as well as SPS.
