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Targeted screening and profiling of massive components of colistimethate sodium by two-dimensional-liquid chromatography-mass spectrometry based on self-constructed compound database
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作者 Xuan Li Minwen Huang +11 位作者 Yue-Mei Zhao Wenxin Liu Nan Hu Jie Zhou Zi-Yi Wang Sheng Tang Jian-Bin Pan Hian Kee Lee Yao-zuo Yuan Taijun Hang Hai-Wei Shi Hongyuan Chen 《Journal of Pharmaceutical Analysis》 2025年第2期401-410,共10页
In-depth study of the components of polymyxins is the key to controlling the quality of this class of antibiotics.Similarities and variations of components present significant analytical challenges.A two-dimensional(2... In-depth study of the components of polymyxins is the key to controlling the quality of this class of antibiotics.Similarities and variations of components present significant analytical challenges.A two-dimensional(2D)liquid chromatography-mass spectrometry(LC-MS)method was established for screening and comprehensive profiling of compositions of the antibiotic colistimethate sodium(CMS).A high concentration of phosphate buffer mobile phase was used in the first-dimensional LC system to get the components well separated.For efficient and high-accuracy screening of CMS,a targeted method based on a self-constructed high resolution(HR)mass spectrum database of CMS components was established.The database was built based on the commercial MassHunter Personal Compound Database and Library(PCDL)software and its accuracy of the compound matching result was verified with six known components before being applied to genuine sample screening.On this basis,the unknown peaks in the CMS chromatograms were deduced and assigned.The molecular formula,group composition,and origins of a total of 99 compounds,of which the combined area percentage accounted for more than 95%of CMS components,were deduced by this 2D-LC-MS method combined with the MassHunter PCDL.This profiling method was highly efficient and could distinguish hundreds of components within 3 h,providing reliable results for quality control of this kind of complex drugs. 展开更多
关键词 Colistimethate sodium 2D-LC-MS profiling Targeted screening Component deduction DATABASE
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Untargeted metabolomic profiling,nutritional composition and enzyme changes on bigeye tuna(Thunnus obesus)during cold storage by UPLC-MS coupled with logistic regression
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作者 Xinyun Wang Zixuan Zhao +1 位作者 Jun Yan Jing Xie 《Food Science and Human Wellness》 2025年第7期2811-2821,共11页
Bigeye tuna is a protein-rich fish that is susceptible to spoilage during cold storage,however,there is limited information on untargeted metabolomic profiling of bigeye tuna concerning spoilage-associated enzymes and... Bigeye tuna is a protein-rich fish that is susceptible to spoilage during cold storage,however,there is limited information on untargeted metabolomic profiling of bigeye tuna concerning spoilage-associated enzymes and metabolites.This study aimed to investigate how cold storage affects enzyme activities,nutrient composition,tissue microstructures and spoilage metabolites of bigeye tuna.The activities of cathepsins B,H,L increased,while Na^(+)/K^(+)-ATPase and Mg^(2+)-ATPase decreased,α-glucosidase,lipase and lipoxygenase first increased and then decreased during cold storage,suggesting that proteins undergo degradation and ATP metabolism occurs at a faster rate during cold storage.Nutrient composition(moisture and lipid content),total amino acids decreased,suggesting that the nutritional value of bigeye tuna was reduced.Besides,a logistic regression equation has been established as a food analysis tool and assesses the dynamics and correlation of the enzyme of bigeye tuna during cold storage.Based on untargeted metabolomic profiling analysis,a total of 524 metabolites were identified in the bigeye tuna contained several spoilage metabolites involved in lipid metabolism(glycerophosphocholine and choline phosphate),amino acid metabolism(L-histidine,5-deoxy-5′-(methylthio)adenosine,5-methylthioadenosine),carbohydrate metabolism(D-gluconic acid,α-D-fructose 1,6-bisphosphate,D-glyceraldehyde 3-phosphate).The results of tissue microstructures of tuna showed a looser network and visible deterioration of tissue fiber during cold storage.Therefore,metabolomic analysis and tissue microstructures provide insight into the spoilage mechanism investigations on bigeye tuna during cold storage. 展开更多
关键词 Bigeye tuna Enzyme activities Nutrient composition Tissue microstructures Logistic regression Untargeted metabolomic profiling
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Ribosome profiling and single-cell RNA sequencing identify the unfolded protein response as a key regulator of pigeon lactation
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作者 Jing Liu San-Feng Liu +8 位作者 Hui-Rong Mao Hong-Xia Jiang Shui-Bing Liu Xiao-Fei Xu Jin-Tao Wu Xun Liu Wen-Tao Zhang Xiao-Long Hu Biao Chen 《Zoological Research》 2025年第1期54-74,共21页
Pigeons and certain other avian species produce a milklike secretion in their crop sacs to nourish offspring,yet the detailed processes involved are not fully elucidated.This study investigated the crop sacs of 225-da... Pigeons and certain other avian species produce a milklike secretion in their crop sacs to nourish offspring,yet the detailed processes involved are not fully elucidated.This study investigated the crop sacs of 225-day-old unpaired non-lactating male pigeons(MN)and males initiating lactation on the first day after incubation(ML).Using RNA sequencing,ribosomeprofiling,andsingle-cell transcriptome sequencing(scRNA-seq),we identified a significant up-regulation of genes associated with ribosome assembly and protein synthesis in ML compared to MN.Results from scRNA-seq analysis identified 12distinct cell types and 22 clusters,with secretory epithelial cells(SECs)exhibiting marked expression of plasma cell markers,including IGLL1 and MZB1.RNA fluorescence in situ hybridization(RNA FISH)and IgY quantification confirmed the critical role of SECs in producing endogenous IgY during lactation.We propose that fibroblast-derived BAFF signals activate SECs,mimicking B cell transformation and enhancing protein production through the unfolded protein response(UPR).These findings shed light on the cellular dynamics of pigeon milk production and contribute to a broader understanding of avian biology. 展开更多
关键词 PIGEON Crop lactation Secretory epithelial cells Single-cell RNA sequencing Ribosome profiling Signaling pathway
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High-precision immune-related plasma proteomics profiling predicts response to immunotherapy in patients with triple-negative breast cancer
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作者 Yuling Xiao Hang Zhang +11 位作者 Yi Xiao Ying Wang Jing Zhang Qi Hua Pengchen Hu Xinyan Lyu Weihua Shou Xin Hu Zhiming Shao Yizhou Jiang Wei Huang Jinxiu Shi 《Cancer Biology & Medicine》 2025年第7期854-870,共17页
Objective:While immunotherapy holds great potential for triple-negative breast cancer(TNBC),the lack of non-invasive biomarkers to identify beneficiaries limits the application.Methods:Paired baseline,on-treatment,and... Objective:While immunotherapy holds great potential for triple-negative breast cancer(TNBC),the lack of non-invasive biomarkers to identify beneficiaries limits the application.Methods:Paired baseline,on-treatment,and post-treatment plasma samples were collected from 195 TNBC patients receiving anti-PD-1 immunotherapy in this retrospective study conducted at the Fudan University Shanghai Cancer Center(FUSCC)for sequential high-precision proteomic profiling.Results:ARG1,NOS3,and CD28 were identified as plasma proteins significantly associated with the response to immunotherapy in neoadjuvant settings or in advanced stages of TNBC.Matched single-cell RNA sequencing data were incorporated to correlate peripheral plasma with the tumor microenvironment.Furthermore,the Plasma Immuno Prediction Score was developed to demonstrate significant predictive power for evaluating the efficacy and prognosis of patients undergoing neoadjuvant immunotherapy.Conclusions:The results underscore the importance of systemic immunity in the immunotherapy response and support the use of plasma protein profiles as a feasible tool for enhancing personalized management of immunotherapy in breast cancer. 展开更多
关键词 Triple-negative breast cancer IMMUNOTHERAPY non-invasive biomarkers efficacy prediction plasma proteomic profiling
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Genome-Wide Gene Expression Profiling in Human Adipose-Derived Mesenchymal Stem Cells
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作者 Sae Hee Cheon Sung-Whan Kim 《BIOCELL》 2025年第9期1697-1710,共14页
Objectives:Despite the considerable regenerative capacity exhibited by adipose-derived mesenchymal stem cells(ASCs),their genetic and molecular mechanisms remain incompletely understood.Methods:In this study,we analyz... Objectives:Despite the considerable regenerative capacity exhibited by adipose-derived mesenchymal stem cells(ASCs),their genetic and molecular mechanisms remain incompletely understood.Methods:In this study,we analyzed the global gene expression profile of adipose-derived mesenchymal stem cells(ASCs)using microarray analysis and compared it with stromal vascular fraction(SVF)cells.Results:Microarray analysis revealed that ASCs express elevated levels of genes related to the extracellular matrix(ECM;extracellular matrix)and collagen,which are critical components of tissue remodeling and wound healing.Additionally,genes associated with cell growth,differentiation,motility,and plasticity were highly expressed.When compared to stromal vascular fraction(SVF)cells,ASCs demonstrated enrichment of genes involved in anti-inflammatory responses,immune modulation,tissue repair,cell adhesion,and migration processes.Gene Set Enrichment Analysis(GSEA;Gene Set Enrichment Analysis)showed activation of pathways related to angiogenesis,such as vascular endothelial growth factor(VEGF),Integrin,Wnt signaling pathways,transforming growth factor-beta(TGF-β),extracellular matrix(ECM),and matrix metalloproteinase(MMP),highlighting the significant angiogenic potential of ASCs.Gene Ontology(GO;Gene Ontology)analysis further linked ASCs to biological processes associated with the regulation of cell proliferation and muscle cell differentiation.Conclusion:These findings collectively underscore the suitability of adipose-derived mesenchymal stem cells(ASCs)as a promising candidate for regenerative medicine,particularly in applications involving tissue repair,immune modulation,and promotion of angiogenesis. 展开更多
关键词 Adipose-derived mesenchymal stem cells ANGIOGENESIS extracellular matrix gene expression profiling immune modulation
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Single-cell spatial immune profiling for precision immunotherapy in Lynch syndrome
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作者 Ramadhani Chambuso Stephene S Meena 《Journal of the National Cancer Center》 2025年第1期3-7,共5页
Lynch syndrome(LS)is the most common hereditary colorectal cancer(CRC)predisposition syndrome,characterized by a high mutational burden and microsatellite instability-high(MSI-H)tumors.Immunology of LS-associated CRC(... Lynch syndrome(LS)is the most common hereditary colorectal cancer(CRC)predisposition syndrome,characterized by a high mutational burden and microsatellite instability-high(MSI-H)tumors.Immunology of LS-associated CRC(LS-CRC)is unique,with significant implications for treatment.Despite well-established knowledge of LS immunology,immunotherapy dose and treatment response can vary significantly based on local tumor immunity and specific germline pathogenic variant of LS genes.This variability necessitates tailored surveillance strategies and new personalised immunotherapy approaches for LS patients.LS-CRC often benefits from immunotherapy due to the distinct tumor microenvironment(TME)and the variety of tumor infiltrating lymphocytes(TILs).This perspective discusses a novel approach of analysing spatial TILs at a single-cell level using tumor whole slide images(WSIs)that accounts for the distinct TME of LS-CRC.By emphasizing the necessity of personalized medicine in hereditary cancer syndromes,the future research and clinical practices that enhance patient outcomes through precision oncology is inspired. 展开更多
关键词 single cell spatial immune profiling personalized medicine precision immunotherapy Lynch syndrome tumor infiltrating lymphocytes precision oncology tumor microenvironment colorectal cancer
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Comprehensive ultra-high-performance liquid chromatography fingerprint profiling and network pharmacology analysis for the quality assessment of Lygodium japonicum(Thunb.)Sw.
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作者 Zhiwen Duan Haibao Qiu +6 位作者 Xiaoxia Liu Fangping Zhang Wenkai Xie Minyou He Dongmei Sun Xiangdong Chen Zhenyu Li 《Journal of Traditional Chinese Medical Sciences》 2025年第3期434-444,共11页
Objective:To evaluate the quality of Lygodium japonicum(Thunb.)Sw.(L.japonicum,Hai Jin Sha)by comparing its components without stewed(W)and stewed(S)using ultra-high-performance liquid chromatography(UHPLC)and chemome... Objective:To evaluate the quality of Lygodium japonicum(Thunb.)Sw.(L.japonicum,Hai Jin Sha)by comparing its components without stewed(W)and stewed(S)using ultra-high-performance liquid chromatography(UHPLC)and chemometric analysis.Additionally,network pharmacology was employed to investigate the possible mechanisms of action of L.japonicum in the urinary calculi(UC)treatment.Methods:A fingerprinting method was established to identify components through UHPLC-tandem mass spectrometry.Chemometric techniques were used to compare the L.japonicum extraction methods.Furthermore,various network pharmacological approaches were used to identify and analyze the potential targets of the identified components in relation to UC.Results:The W and S extracts were distributed into two distinct clusters.Significant differences in the levels of protocatechuic aldehyde,caffeic acid,and p-coumaric acid were observed between S and W.Network pharmacology analysis revealed that the primary targets of L.japonicum in the UC treatment were serum albumin and epidermal growth factor receptors,with potential active components including protocatechuic acid and caffeic acid.Conclusion:This study comprehensively examined the therapeutic components of L.japonicum before and after boiling,shedding light on its potential mechanisms of action in UC treatment.These findings offer valuable insights into the development and utilization of L.japonicum resources. 展开更多
关键词 Lygodium japonicum(Thunb.)Sw. UHPLC Fingerprint profiling Network pharmacology Caffeic acid Quality evaluation
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Effects of the“Internet+”nursing model based on user profilingon postoperative recovery in breast cancer:A prospective randomized controlled clinical trial
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作者 Xiuyuan Xie Yuanfang Ren +8 位作者 Jia Yao Yujie Fei Fenghe Liu Qian Tong Juanjuan Huang Meihong Kou Cuifeng Jin Weijuan Yang Haiping Xu 《International Journal of Nursing Sciences》 2025年第4期361-368,I0003,I0004,共10页
Objectives:This study aimed to explore the effectiveness and advantages of an“Internet+”nursing model based on user profilingin the rehabilitation of postoperative breast cancer patients.Methods:Breast cancer patien... Objectives:This study aimed to explore the effectiveness and advantages of an“Internet+”nursing model based on user profilingin the rehabilitation of postoperative breast cancer patients.Methods:Breast cancer patients admitted to the hospital from July 2023 to September 2024 were enrolled.These patients were randomly assigned to a control group and an intervention group,with 52 patients in each group.The control group received routine nursing care,while the intervention group received an“Internet+”nursing intervention based on user profilingin addition to routine care.The intervention period lasted for one month following discharge.Before and one month after the intervention,the Fear of Progression Questionnaire-Short Form(FOP-Q-SF),the Fear of Cancer Recurrence Inventory-Short Form(FCRI-SF),Chinese Posttraumatic Growth Inventory(C-PTGI),and the Functional Assessment of Cancer Therapy-Breast(FACT-B)were applied to assess the effects of interventions.Results:A total of 104 patients were analyzed.After the intervention,FOP-Q-SF and FCRI-SF scores were significantlylower in the intervention group compared to the control group,with statistical significance(t=3.98,P<0.001;t=-7.59,P<0.001),and Cohen’s d of 0.781 and 1.49,respectively.Additionally,CPTGI and FACT-B scores in the intervention group were significantly higher than those in the control group(t=-6.534,P<0.001;t=-4.579,P<0.001),with Cohen’s d of 0.585 and 0.656.Conclusions:An“Internet+”nursing model based on user profilingcould reduce postoperative breast cancer patients fear of disease progression and cancer recurrence,also enhancing posttraumatic growth and overall quality of life. 展开更多
关键词 User profiling Internet+ Breast cancer Fear of disease progression Fear of cancer recurrence Post-traumatic growth Quality of life
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High-resolution profiling observation of carbon source dynamics in a mussel farm in the Changjiang River estuary during early autumn
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作者 Dawei XU Di WU +2 位作者 Shouye YANG Yanping HU Kui WANG 《Journal of Oceanology and Limnology》 2025年第6期1985-2001,共17页
Global warming underscores the urgent need to enhance carbon sinks to mitigate climate change,yet the role of coastal shellfish aquaculture area as either carbon sinks or sources remains unclear.In this study,we condu... Global warming underscores the urgent need to enhance carbon sinks to mitigate climate change,yet the role of coastal shellfish aquaculture area as either carbon sinks or sources remains unclear.In this study,we conducted high-resolution profiling observations of CO_(2)dynamics and net community production(NCP)in a mussel farm located in the Changjiang(Yangtze)River estuary(CRE)during early autumn.Results indicate that the partial pressure of CO_(2)(pCO_(2))in the water column was consistently higher than the atmospheric level,averaging 74.75±2.44 Pa,signaling that the mussel farm acted as a CO_(2)source.The average air-water CO_(2)exchange flux(FCO_(2))averaged-1.91±1.16 mmol/(m^(2)·h),and NCP in the water column(NCPCOL)averaged-6.66±12.81 mmol/(m^(2)·h),revealing a heterotrophic condition.A significant inverse correlation was found between NCPCOLand sea surface pCO_(2)with a lag time of approximately 3.31 h,highlighting the influence of biological activity in modulating CO_(2)dynamics.Physical processes such as freshwater inputs,vertical mixing,and wind patterns,also played a crucial role in shaping pCO_(2)variations.The study emphasizes the complexity of CO_(2)dynamics in costal aquaculture areas and the need for long-term,high-resolution monitoring to better understand their contribution to climate change mitigation.The high-resolution profiling system provided novel insights into the dynamics of NCP and CO_(2)fluxes,showing its potential as an advanced tool for studying aquaculture systems.Future research should focus on expanding the geographic and temporal scope of studies,combining observational and modeling approaches to better predict the responses of aquaculture systems to environmental changes. 展开更多
关键词 Changjiang River estuary profiling system mussel farm net community production(NCP) carbon source-sink
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基于部分调用图的线程敏感Profiling技术 被引量:1
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作者 刘弢 吴承勇 张兆庆 《计算机工程》 CAS CSCD 北大核心 2008年第10期30-32,共3页
Profiling技术能提供程序实际执行时的相关信息。在动态编译环境中,Profiling的运行时开销导致难以收集较为复杂的运行时信息。该文提出一种基于部分调用图的Profiling技术,在收集多线程程序中线程相关的各种执行信息时,能有效减少运行... Profiling技术能提供程序实际执行时的相关信息。在动态编译环境中,Profiling的运行时开销导致难以收集较为复杂的运行时信息。该文提出一种基于部分调用图的Profiling技术,在收集多线程程序中线程相关的各种执行信息时,能有效减少运行时开销。在开放源码的虚拟机上实现了该Profiling技术。实验表明,其运行时开销只有原来的2%-4%。 展开更多
关键词 profiling技术 在线profiling 运行时环境
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Profiling student’s psychological capital and risk for learner burnout:Results and implications of a Chinese study
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作者 Ruijun Song Xichen Qin +4 位作者 Xiaomei Yang Mei Wu Jinyu Hong Youping Cao Yuting Ning 《Journal of Psychology in Africa》 2025年第2期265-270,共6页
The current study conducted the psychological capital profiles and the relation between profile memberships and learning burnout among undergraduates.Participants were 541 Chinese undergraduates ranging from 18 to 21 ... The current study conducted the psychological capital profiles and the relation between profile memberships and learning burnout among undergraduates.Participants were 541 Chinese undergraduates ranging from 18 to 21 years old(48.2%male;Mean years=19.54,SD=1.09 years).Latent profile analysis revealed three categories of psychological capital profile consistent high psychological capital profile(50.5%),consistent low psychological capital profile(38.1%),and dominate loss-orientated psychological capital profile(11.4%).The undergraduates in consistent high profile reported high self-efficacy,resilience,hope,and optimism.Consistent low profile characterized by a little low(~0.50 SD below the M)self-efficacy,resilience,hope,and optimism.Dominant loss-orientated profile displayed low self-efficacy,hope,optimism,but a little relatively high resilience.Specifically,undergraduates in consistent high profile exhibited low level of learning burnout;while undergraduates with low level of psychological capital(i.e.,consistent low profile and dominate loss-orientated profile)reported high level of learning burnout.The findings have theoretical significance which provides important knowledge about psychological capital profile among Chinese undergraduates.They have practical implications for student counselling and development providing person-centric support to students based on their individual psychological profiles. 展开更多
关键词 psychological capital learning burnout UNDERGRADUATES latent profile analysis
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NBS Profiling:一种有效寻找植物抗性基因的分子标记 被引量:1
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作者 裴冬丽 李成伟 《植物生理学通讯》 CSCD 北大核心 2009年第12期1226-1230,共5页
核苷酸结合位点-富含亮氨酸重复(NBS-LRR)类的抗病基因是植物抗病基因中最大的一类,也是近年来植物抗病分子育种研究的一大热点。NBS profiling是一种新型的寻找NBS-LRR类R基因和R基因同源序列(RGA)的分子标记。本文介绍这一分子标记技... 核苷酸结合位点-富含亮氨酸重复(NBS-LRR)类的抗病基因是植物抗病基因中最大的一类,也是近年来植物抗病分子育种研究的一大热点。NBS profiling是一种新型的寻找NBS-LRR类R基因和R基因同源序列(RGA)的分子标记。本文介绍这一分子标记技术的基本原理、方法步骤、优点及其在寻找植物抗性基因中的作用。 展开更多
关键词 R基因 同源序列克隆 NBS profiling
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利用正交实验设计优化马铃薯NBS-profiling反应体系
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作者 王颖 卢丽丽 +3 位作者 周福仙 李先平 隋启君 潘哲超 《分子植物育种》 CAS CSCD 北大核心 2018年第21期7057-7062,共6页
本研究以马铃薯品种自来洋芋为实验材料,利用正交试验的方法对影响马铃薯NBS profiling体系稳定性的7个主要因素:PCR Buffer体积、dNTP浓度、Taq酶活力、DNA模板浓度、引物浓度、引物接头浓度及稀释倍数,进行4水平设计,选用L32(47)正交... 本研究以马铃薯品种自来洋芋为实验材料,利用正交试验的方法对影响马铃薯NBS profiling体系稳定性的7个主要因素:PCR Buffer体积、dNTP浓度、Taq酶活力、DNA模板浓度、引物浓度、引物接头浓度及稀释倍数,进行4水平设计,选用L32(47)正交表,以PCR产物的多态性为评价标准进行优化试验,从而建立多态性最高的反应体系。结果表明,马铃薯NBS profiling体系的优化反应体系最终确定为:在25μL体系中,10×PCR Buffer体积为2.5μL、dNTP浓度为250μmol/L、Taq酶活力为0.02 U、DNA模板浓度为400 ng、引物浓度为30μmol/L、引物接头浓度为20μmol/L,并将第1次PCR产物稀释10倍,该优化体系可有效提高NBS-Profiling的多态性。NBS-Profiling技术在马铃薯种质资源的抗病基因挖掘方面具有重要的应用价值,因此优化NBS-Profiling反应体系,确定多态性最高的反应体系对该方法的应用具有重要作用。 展开更多
关键词 马铃薯 NBS profiling 正交设计
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基于OPT Cache替换Profiling的Cache提示生成
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作者 田兴彦 黄春 陈火旺 《计算机工程》 CAS CSCD 北大核心 2005年第20期85-87,共3页
提出了一个基于最优Cache替换(OPT)Profiling的静态Cache提示生成方法,并通过模拟SPEC2000Int测试程序,对该方法与LRUCache替换策略进行了性能比较。
关键词 Cache提示 profiling优化 OPT Cache替换
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指导cache静态划分的程序性能profiling优化技术 被引量:3
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作者 贾耀仓 武成岗 张兆庆 《计算机研究与发展》 EI CSCD 北大核心 2012年第1期93-102,共10页
对于共享cache的多核处理器,如何管理好各个核对cache的利用,对于充分发挥多核处理器性能是很关键的问题.目前采用的cache替换方法程序间会出现性能干扰,cache静态划分技术则是通过为同时运行的程序分配不同的空间来解决性能干扰问题.... 对于共享cache的多核处理器,如何管理好各个核对cache的利用,对于充分发挥多核处理器性能是很关键的问题.目前采用的cache替换方法程序间会出现性能干扰,cache静态划分技术则是通过为同时运行的程序分配不同的空间来解决性能干扰问题.为了给程序分配合适大小的cache空间,需要对程序进行性能profiling,即事先多遍运行收集程序在各种cache容量下的性能数据,这种性能profiling方法开销巨大,影响实用.为了解决性能profiling需要多遍运行程序的问题,提出了只需单遍运行的程序性能profiling优化技术.该技术利用在线的phase分析技术识别程序的运行阶段,避免对相同阶段的重复profiling;同时分析程序各phase的性能同cache容量变化的关系趋势,对于性能不敏感的容量变化则不进行profiling,降低开销.在程序运行结束后通过程序各phase在cache各种容量下的性能来估计程序在各容量下的整体性能,以指导cache静态划分.实验表明,该技术的开销仅为7%,而该方法指导的cache划分比未划分时有8%的性能改进,同多遍运行的程序性能profiling指导的cache划分性能相比仅有1%的下降. 展开更多
关键词 多核 CACHE划分 页着色 性能profiling phase分析
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Cache Profiling技术 被引量:2
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作者 周谦 冯晓兵 张兆庆 《计算机工程》 EI CAS CSCD 北大核心 2006年第13期47-48,共2页
如何减少和隐藏cache失效的延迟,是人们关注的热点。编译器为了得到cache访问命中的情况,往往使用模拟器去跑一遍来得到结果,这样的速度很慢。为了克服以上缺点,提出了在编译器中作cache profiling来获取cache访问的信息。类似于value p... 如何减少和隐藏cache失效的延迟,是人们关注的热点。编译器为了得到cache访问命中的情况,往往使用模拟器去跑一遍来得到结果,这样的速度很慢。为了克服以上缺点,提出了在编译器中作cache profiling来获取cache访问的信息。类似于value profiling和strideprofiling,cache profiling对访存指令作插装,可以有效地提高速度,并且只需要编译器的支持即可。Cache profiling获得的信息可以用来改进指令调度、软件预取、生成cache hint和辅助线程等。 展开更多
关键词 profiling CACHE profiling CACHE HINT 编译器
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基于动态profiling技术的流水粒度调优 被引量:2
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作者 马琳 陈莉 冯晓兵 《计算机研究与发展》 EI CSCD 北大核心 2005年第6期1065-1072,共8页
结点间流水是解决数据分布和计算分割不一致时的一种重要的并行发掘技术.结点间流水通过计算与通信的重叠获得并行度.精确的流水粒度是获得良好的流水性能的关键.流水分块取决于很多因素,如程序规模、程序的访问模式、结点规模、结点的... 结点间流水是解决数据分布和计算分割不一致时的一种重要的并行发掘技术.结点间流水通过计算与通信的重叠获得并行度.精确的流水粒度是获得良好的流水性能的关键.流水分块取决于很多因素,如程序规模、程序的访问模式、结点规模、结点的计算能力和存储体系、通信系统的性能、通信库开销等等.提出了动态profiling方式并实现在流水粒度的推导中,运行时信息收集部分典型分块,结合代价模型推导流水粒度,该模型考虑局部性优化;探索如何减少插桩执行的开销的同时保证代价模型的精度.实验证明,这种方式有更好的适应性,能获得较好的流水并行. 展开更多
关键词 结点间流水 动态profiling技术 循环变换
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cache profiling信息指导的软件流水 被引量:1
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作者 周谦 冯晓兵 张兆庆 《计算机研究与发展》 EI CSCD 北大核心 2008年第5期834-840,共7页
软件流水是一种重要的指令调度技术,它通过同时执行来自不同循环迭代的指令来加快循环的执行时间.随着处理器速度和访存速度差距越拉越大,访存指令尤其是cache miss的访存指令日益成为系统性能提高的瓶颈.由于这些指令的延迟不是固定的... 软件流水是一种重要的指令调度技术,它通过同时执行来自不同循环迭代的指令来加快循环的执行时间.随着处理器速度和访存速度差距越拉越大,访存指令尤其是cache miss的访存指令日益成为系统性能提高的瓶颈.由于这些指令的延迟不是固定的,如何在软件流水中预测并掩盖这些访存指令的延迟是非常重要的.与前人预测访存延迟的方法不同,引入cache profiling技术,通过动态收集到profile信息来预测访存延迟,并进行适当的调度.当增加模调度循环中的访存指令的延迟时,启动间隔也会随之增大,导致性能不会随之上升.CSMS算法和FLMS算法在尽量不增大启动间隔的情况下,改变访存指令的延迟.改进了CSMS算法和FLMS算法,根据cache profiling的信息来改变访存延迟,所以比前人的方法更为准确.实验表明,新方法可以有效地提高程序性能,对SPEC2000测试程序平均性能提高1%左右,个别例子的性能改进高达11%. 展开更多
关键词 软件流水 模调度 CACHE profiling 访存延迟 高性能计算
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Gene expression profiling:Canonical molecular changes and clinicopathological features in sporadic colorectal cancers 被引量:36
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作者 Jin Cheon Kim Seon Young Kim +4 位作者 Seon Ae Roh Dong-Hyung Cho Dae Dong Kim Jeong Hyun Kim Yong Sung Kim 《World Journal of Gastroenterology》 SCIE CAS CSCD 2008年第43期6662-6672,共11页
AIM: To investigate alternative or subordinate pathways involved in colorectal tumorigenesis and tumor growth, possibly determining at-risk populations and predicting responses to treatment. METHODS: Using microarra... AIM: To investigate alternative or subordinate pathways involved in colorectal tumorigenesis and tumor growth, possibly determining at-risk populations and predicting responses to treatment. METHODS: Using microarray gene-expression analysis, we analyzed patterns of gene expression relative to canonical molecular changes and clinicopathological features in 84 sporadic colorectal cancer patients, standardized by tumor location. Subsets of differentially expressed genes were confirmed by real-time reverse-transcript polymerase chain reaction (RT-PCR). RESULTS: The largest number of genes identified as being differentially expressed was by tumor location, and the next largest number by lymphovascular or neural invasion of tumor cells and by mismatch repair (NMR) defects. Amongst biological processes, the immune response was significantly implicated in entire molecular changes observed during colorectal tumorigenesis (P 〈 0.001). Amongst 47 differentially expressed genes, seven (PISD, NIBP, BAI2, STOML1, MRPL21, MRPL16, and MKKS) were newly found to correlate with tumorigenesis and tumor growth. Most location-associated molecular changes had distinct effects on gene expression, but the effects of the latter were sometimes contradictory. CONCLUSION: We show that several differentially expressed genes were associated with canonical molecular changes in sporadic colorectal cancers, possibly constituting alternative or subordinate pathways of tumorigenesis. As tumor location was the dominant factor influencing differential gene expression, location-specific analysis may identify location-associated pathways and enhance the accuracy of class prediction. 展开更多
关键词 Colorectal adenocarcinomas SPORADIC Gene expression profiling TUMORIGENESIS
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An upper ocean response to Typhoon Bolaven analyzed with Argo profiling floats 被引量:22
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作者 LIU Zenghong XU Jianping +1 位作者 SUN Chaohui WU Xiaofen 《Acta Oceanologica Sinica》 SCIE CAS CSCD 2014年第11期90-101,共12页
In situ observations from Argo profiling floats combined with satellite retrieved SST and rain rate are used to investigate an upper ocean response to Typhoon Bolaven from 20 through 29 August 2012. After the passage ... In situ observations from Argo profiling floats combined with satellite retrieved SST and rain rate are used to investigate an upper ocean response to Typhoon Bolaven from 20 through 29 August 2012. After the passage of Typhoon Bolaven, the deepening of mixed layer depth(MLD), and the cooling of mixed layer temperature(MLT) were observed. The changes in mixed layer salinity(MLS) showed an equivalent number of increasing and decreasing because the typhoon-induced salinity changes in the mixed layer were influenced by precipitation, evaporation, turbulent mixing and upwelling of thermocline water. The deepening of the MLD and the cooling of the MLT indicated a significant rightward bias, whereas the MLS was freshened to the left side of the typhoon track and increased on the other side. Intensive temperature and salinity profiles observed by Iridium floats make it possible to view response processes in the upper ocean after the passage of a typhoon. The cooling in the near-surface and the warming in the subsurface were observed by two Iridium floats located to the left side of the cyclonic track during the development stage of the storm, beyond the radius of maximum winds relative to the typhoon center. Water salinity increases at the base of the mixed layer and the top of the thermocline were the most obvious change observed by those two floats. On the right side of the track and near the typhoon center when the typhoon was intensified, the significant cooling from sea surface to a depth of 200×10^4 Pa, with the exception of the water at the top of the thermocline, was observed by the other Iridium float. Owing to the enhanced upwelling near the typhoon center, the water salinity in the near-surface increased noticeably. The heat pumping from the mixed layer into the thermocline induced by downwelling and the upwelling induced by the positive wind stress curl are the main causes for the different temperature and salinity variations on the different sides of the track. It seems that more time is required for the anomalies in the subsurface to be restored to pretyphoon conditions than for the anomalies in the mixed layer. 展开更多
关键词 Typhoon Bolaven Argo profiling floats upper ocean response ocean heat content
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