Molecular subtyping of cancer can greatly help to understand the development of disease and predict tumor behavior.Exploring detection methods for precise subtyping is appealing to prognosis and personalized therapy.D...Molecular subtyping of cancer can greatly help to understand the development of disease and predict tumor behavior.Exploring detection methods for precise subtyping is appealing to prognosis and personalized therapy.During the past decades,DNA-based biosensors have exhibited great potential in cancer diagnosis due to their structural programmability and functional diversity.Despite the encouraging progress that has been made,there remains an issue in improving the accuracy and sensitivity of cancer subtyping due to the complex process of disease,especially in preclinical or clinical applications.To accelerate the development of DNA sensors in the identification of cancer subtypes,in this review,we summarized their advances in molecular subtyping by analyzing the heterogeneity in categories and levels of biomarkers between cancer subtypes.The strategies toward genomic and proteomic heterogeneity in cells or on the cell surface,as well as the cancer excretions including extracellular vesicles(EVs)and microRNA(miRNAs)in serum,are summarized.Current challenges and the opportunities of DNA-based sensors in this field are also discussed.展开更多
This paper reports the direct immobilization of deoxyribonucleic acid (DNA) sequences of Herpes simplex virus (5’–AT CAC CGA CCC GGA GAG GGA C–3’) on the surface of DNA sensor by using the cyclic voltammetric meth...This paper reports the direct immobilization of deoxyribonucleic acid (DNA) sequences of Herpes simplex virus (5’–AT CAC CGA CCC GGA GAG GGA C–3’) on the surface of DNA sensor by using the cyclic voltammetric method with the presence of pyrrole. The potential was scanned from –0.7 volt to + 0.6 volt, the scanning rate was at 100mV/s. This kind of DNA sensor was developed to detect Herpes virus DNA in real samples. The FTIR was applied to verify specific binding of DNA sequence and conducting polymer, the morphology of conducting polymer doped with DNA strands was investigated by using a field emission scanning electron microscope (FE-SEM). The results showed that output signal given by coimmobilized DNA/PPy membrane sensor was better than that given by APTS immobilized membrane sensors. The sensor can detect as low as 2 nM of DNA target in real samples.展开更多
An electrochemical sensor incorporating a signal enhancement for the determination of lead （II） ions （Pb2＋） was designed on the basis of the thrombin-binding aptamer （TBA） as a molecular recog- nition element a...An electrochemical sensor incorporating a signal enhancement for the determination of lead （II） ions （Pb2＋） was designed on the basis of the thrombin-binding aptamer （TBA） as a molecular recog- nition element and ionic liquid supported cerium oxide （CeO2） nanoparticles-carbon nanotubes compo- site modification. The composite comprises nanoparticles CeO2, multi-waU carbon nanotubes （MWNTs） and hydrophobic room temperature ionic liquid （RTIL） 1-ethyl-3-methylimidazolium tetrafluoroborate （EMIMBF4）. The electrochemical sensors were fabricated by immersing the CeOa-MWNTs-EMIMBF4 modified glassy carbon electrode （GCE） into the solution of TBA probe. In the presence of Pb2＋, the TBA probe could form stable G-quartet structure by the specific binding interactions between Pb2＋ and TBA. The TBA-bound Pb2＋ can be electrochemically reduced, which provides a readout signal for quantitative detection of Pb2＋. The reduction peak current is linearly related to the concentration of Pb2＋ from 1.0 ＊ 10-8 M to 1.0 ＊ 105 M with a detection limit of 5 ＊ 109 M. This work demonstrates that the CeOz-MWNTs-EMIMBF4 nanocomposite modified GCE provides a promising platform for immobi- lizing the TBA probe and enhancing the sensitivity of the DNA-based sensors.展开更多
In this work, an electrochemical sensor was fabricated for determination of an anthracycline, doxorubicin(DOX) as a chemotherapy drug in plasma based on multi-walled carbon nanotubes modified platinum electrode(Pt/MWC...In this work, an electrochemical sensor was fabricated for determination of an anthracycline, doxorubicin(DOX) as a chemotherapy drug in plasma based on multi-walled carbon nanotubes modified platinum electrode(Pt/MWCNTs). DOX was effectively accumulated on the surface of modified electrode and generated a pair of redox peaks at around 0.522 and 0.647 V(vs. Ag/Ag Cl) in Britton Robinson(B-R) buffer(p H 4.0, 0.1 M). The electrochemical parameters including p H, type of buffer, accumulation time, amount of modifier and scan rate were optimized. Under the optimized conditions, there was a linear correlation between cathodic peak current and concentration of DOX in the range of 0.05–4.0 μg/m L with the detection limit of 0.002 μg/m L. The number of electron transfers(n) and electron transfer-coefficient(α) were estimated as 2.0 and 0.25, respectively. The constructed sensor displayed excellent precision, sensitivity, repeatability and selectivity in the determination of DOX in plasma. Moreover, cyclic voltammetry studies of DOX in the presence of DNA showed an intercalation mechanism with binding constant(K_b) of 1.12×10~5L/mol.展开更多
A ratiometric fluorescent sensor（Hoe-NI） was developed by connecting a nucleus targeted Hoechst unit to a naphthalimide dye via ＂click chemistry＂. The sensor achieves high specific nucleus labeling with wash-free ...A ratiometric fluorescent sensor（Hoe-NI） was developed by connecting a nucleus targeted Hoechst unit to a naphthalimide dye via ＂click chemistry＂. The sensor achieves high specific nucleus labeling with wash-free staining method in various kinds of living cells. The fluorescence ratio of the two emission bands（450 nm for Hoechst and 505 nm for naphthalimide） is changed sensitively to the variation of DNA concentrations, which provides the quantitative information in the processes of DNA damage induced by hydroxyl radicals and antitumor drug. Therefore, Hoe-NI is a recommendable sensor for the monitoring of nuclear DNA damage that reveals the health status of cells.展开更多
In this paper we report on a study of the CMOS image sensor detection of DNA based on self-assembled nano- metallic particles, which are selectively deposited on the surface of the passive image sensor. The nano-metal...In this paper we report on a study of the CMOS image sensor detection of DNA based on self-assembled nano- metallic particles, which are selectively deposited on the surface of the passive image sensor. The nano-metallic particles effectively block the optical radiation in the visible spectrum of ordinary light source. When such a technical method is applied to DNA detection, the requirement for a special UV light source in the most popular fluorescence is eliminated. The DNA detection methodology is tested on a CMOS sensor chip fabricated using a standard 0.5 gm CMOS process. It is demonstrated that the approach is highly selective to detecting even a signal-base mismatched DNA target with an extremely-low-concentration DNA sample down to 10 pM under an ordinary light source.展开更多
干扰素-γ诱导蛋白16(interferon gamma-inducible protein 16,IFI16)是含pyrin和造血表达、干扰素诱导特性和核定位(hematopoietic expression,interferon-inducible nature,and nuclear localization,HIN)结构域的蛋白质(pyrin and HI...干扰素-γ诱导蛋白16(interferon gamma-inducible protein 16,IFI16)是含pyrin和造血表达、干扰素诱导特性和核定位(hematopoietic expression,interferon-inducible nature,and nuclear localization,HIN)结构域的蛋白质(pyrin and HIN domain-containing protein,PYHIN)家族的重要成员,其独特的分子结构使其能够识别细胞内的多种核酸分子。作为一种关键的免疫调节因子,IFI16可通过多种途径参与天然免疫信号转导,在宿主抗病毒防御中发挥重要作用。本文综述了IFI16的分子特征及其在天然免疫和病毒感染中的调控机制,为抗病毒感染的治疗靶点及药物开发提供理论依据。展开更多
Microbial activity in the water injection system in oil and gas industry leads to an array of challenges, including biofouling, injectivity loss, reservoir plugging, and microbiologically influenced corrosion (MIC). A...Microbial activity in the water injection system in oil and gas industry leads to an array of challenges, including biofouling, injectivity loss, reservoir plugging, and microbiologically influenced corrosion (MIC). An effective mitigation strategy requires online and real-time monitoring of microbial activity and growth in the system so that the operators can apply and adjust counter-measures quickly and properly. The previous study [1] identified DNA staining technology-with PicoGreen and SYBR Green dyes—as a very promising method for automated, online determination of microbial cell abundance in the vast Saudi Aramco injection seawater systems. This study evaluated DNA staining technology on detection limit, automation potential, and temperature stability for the construction of automated sensor prototype. DNA staining with SYBR Green dye was determined to be better suited for online and real-time monitoring of microbial activity in the Saudi Aramco seawater systems. SYBR Green staining does not require sample pre-treatment, and the fluorescence signal intensity is more stable at elevated temperatures up to 30℃. The lower detection limit of 2 × 10<sup>3</sup>/ml was achieved under the optimized conditions, which is sufficient to detect microbial numbers in Saudi Aramco injection seawater. Finally, the requirements for design and construction of SYBR-based automated sensor prototype were determined.展开更多
基金supported by the National Natural Science Foundation of China(21890744,22104032)the National Key R&D Program of China(2019YFA0210100)+1 种基金the China Postdoctoral Science Foundation(2020 M672470)the National Postdoctoral Program for Innovative Talents(BX2020118).
文摘Molecular subtyping of cancer can greatly help to understand the development of disease and predict tumor behavior.Exploring detection methods for precise subtyping is appealing to prognosis and personalized therapy.During the past decades,DNA-based biosensors have exhibited great potential in cancer diagnosis due to their structural programmability and functional diversity.Despite the encouraging progress that has been made,there remains an issue in improving the accuracy and sensitivity of cancer subtyping due to the complex process of disease,especially in preclinical or clinical applications.To accelerate the development of DNA sensors in the identification of cancer subtypes,in this review,we summarized their advances in molecular subtyping by analyzing the heterogeneity in categories and levels of biomarkers between cancer subtypes.The strategies toward genomic and proteomic heterogeneity in cells or on the cell surface,as well as the cancer excretions including extracellular vesicles(EVs)and microRNA(miRNAs)in serum,are summarized.Current challenges and the opportunities of DNA-based sensors in this field are also discussed.
文摘This paper reports the direct immobilization of deoxyribonucleic acid (DNA) sequences of Herpes simplex virus (5’–AT CAC CGA CCC GGA GAG GGA C–3’) on the surface of DNA sensor by using the cyclic voltammetric method with the presence of pyrrole. The potential was scanned from –0.7 volt to + 0.6 volt, the scanning rate was at 100mV/s. This kind of DNA sensor was developed to detect Herpes virus DNA in real samples. The FTIR was applied to verify specific binding of DNA sequence and conducting polymer, the morphology of conducting polymer doped with DNA strands was investigated by using a field emission scanning electron microscope (FE-SEM). The results showed that output signal given by coimmobilized DNA/PPy membrane sensor was better than that given by APTS immobilized membrane sensors. The sensor can detect as low as 2 nM of DNA target in real samples.
基金supports from the National Science Foundations of China (Nos. 20875076 and 21005061)the Specialized Research Fund for the Doctoral Program of Higher Education of China (No. 20096101120011)+2 种基金the Natural Science Basic Research Plan in Shaanxi Province of China (No.2010JQ2013)the Education Department of Shaanxi Province,China (No. 09JK759)the NWU Graduate Innovation and Creativity Funds (No. 09YSY04)
文摘An electrochemical sensor incorporating a signal enhancement for the determination of lead （II） ions （Pb2＋） was designed on the basis of the thrombin-binding aptamer （TBA） as a molecular recog- nition element and ionic liquid supported cerium oxide （CeO2） nanoparticles-carbon nanotubes compo- site modification. The composite comprises nanoparticles CeO2, multi-waU carbon nanotubes （MWNTs） and hydrophobic room temperature ionic liquid （RTIL） 1-ethyl-3-methylimidazolium tetrafluoroborate （EMIMBF4）. The electrochemical sensors were fabricated by immersing the CeOa-MWNTs-EMIMBF4 modified glassy carbon electrode （GCE） into the solution of TBA probe. In the presence of Pb2＋, the TBA probe could form stable G-quartet structure by the specific binding interactions between Pb2＋ and TBA. The TBA-bound Pb2＋ can be electrochemically reduced, which provides a readout signal for quantitative detection of Pb2＋. The reduction peak current is linearly related to the concentration of Pb2＋ from 1.0 ＊ 10-8 M to 1.0 ＊ 105 M with a detection limit of 5 ＊ 109 M. This work demonstrates that the CeOz-MWNTs-EMIMBF4 nanocomposite modified GCE provides a promising platform for immobi- lizing the TBA probe and enhancing the sensitivity of the DNA-based sensors.
基金the research council of Gachsaran Branch, Islamic Azad University, Iran for supporting this project under Grant no. 25518
文摘In this work, an electrochemical sensor was fabricated for determination of an anthracycline, doxorubicin(DOX) as a chemotherapy drug in plasma based on multi-walled carbon nanotubes modified platinum electrode(Pt/MWCNTs). DOX was effectively accumulated on the surface of modified electrode and generated a pair of redox peaks at around 0.522 and 0.647 V(vs. Ag/Ag Cl) in Britton Robinson(B-R) buffer(p H 4.0, 0.1 M). The electrochemical parameters including p H, type of buffer, accumulation time, amount of modifier and scan rate were optimized. Under the optimized conditions, there was a linear correlation between cathodic peak current and concentration of DOX in the range of 0.05–4.0 μg/m L with the detection limit of 0.002 μg/m L. The number of electron transfers(n) and electron transfer-coefficient(α) were estimated as 2.0 and 0.25, respectively. The constructed sensor displayed excellent precision, sensitivity, repeatability and selectivity in the determination of DOX in plasma. Moreover, cyclic voltammetry studies of DOX in the presence of DNA showed an intercalation mechanism with binding constant(K_b) of 1.12×10~5L/mol.
基金supported by the National Natural Science Foundation of China (Nos. 21376038, 21421005 and 21576040)National Basic Research Program of China (No. 2013CB733702)
文摘A ratiometric fluorescent sensor（Hoe-NI） was developed by connecting a nucleus targeted Hoechst unit to a naphthalimide dye via ＂click chemistry＂. The sensor achieves high specific nucleus labeling with wash-free staining method in various kinds of living cells. The fluorescence ratio of the two emission bands（450 nm for Hoechst and 505 nm for naphthalimide） is changed sensitively to the variation of DNA concentrations, which provides the quantitative information in the processes of DNA damage induced by hydroxyl radicals and antitumor drug. Therefore, Hoe-NI is a recommendable sensor for the monitoring of nuclear DNA damage that reveals the health status of cells.
基金Project supported by the Key Program of the National Natural Science Foundation of China (Grant No. 61036004)the Shenzhen Science & Technology Foundation, China (Grant No. CXB201005250031A)+1 种基金the Fundamental Research Project of Shenzhen Science & Technology Foundation, China (Grant No. JC201005280670A)the International Collaboration Project of Shenzhen Science & Technology Foundation, China (Grant No. ZYA2010006030006A)
文摘In this paper we report on a study of the CMOS image sensor detection of DNA based on self-assembled nano- metallic particles, which are selectively deposited on the surface of the passive image sensor. The nano-metallic particles effectively block the optical radiation in the visible spectrum of ordinary light source. When such a technical method is applied to DNA detection, the requirement for a special UV light source in the most popular fluorescence is eliminated. The DNA detection methodology is tested on a CMOS sensor chip fabricated using a standard 0.5 gm CMOS process. It is demonstrated that the approach is highly selective to detecting even a signal-base mismatched DNA target with an extremely-low-concentration DNA sample down to 10 pM under an ordinary light source.
文摘干扰素-γ诱导蛋白16(interferon gamma-inducible protein 16,IFI16)是含pyrin和造血表达、干扰素诱导特性和核定位(hematopoietic expression,interferon-inducible nature,and nuclear localization,HIN)结构域的蛋白质(pyrin and HIN domain-containing protein,PYHIN)家族的重要成员,其独特的分子结构使其能够识别细胞内的多种核酸分子。作为一种关键的免疫调节因子,IFI16可通过多种途径参与天然免疫信号转导,在宿主抗病毒防御中发挥重要作用。本文综述了IFI16的分子特征及其在天然免疫和病毒感染中的调控机制,为抗病毒感染的治疗靶点及药物开发提供理论依据。
文摘Microbial activity in the water injection system in oil and gas industry leads to an array of challenges, including biofouling, injectivity loss, reservoir plugging, and microbiologically influenced corrosion (MIC). An effective mitigation strategy requires online and real-time monitoring of microbial activity and growth in the system so that the operators can apply and adjust counter-measures quickly and properly. The previous study [1] identified DNA staining technology-with PicoGreen and SYBR Green dyes—as a very promising method for automated, online determination of microbial cell abundance in the vast Saudi Aramco injection seawater systems. This study evaluated DNA staining technology on detection limit, automation potential, and temperature stability for the construction of automated sensor prototype. DNA staining with SYBR Green dye was determined to be better suited for online and real-time monitoring of microbial activity in the Saudi Aramco seawater systems. SYBR Green staining does not require sample pre-treatment, and the fluorescence signal intensity is more stable at elevated temperatures up to 30℃. The lower detection limit of 2 × 10<sup>3</sup>/ml was achieved under the optimized conditions, which is sufficient to detect microbial numbers in Saudi Aramco injection seawater. Finally, the requirements for design and construction of SYBR-based automated sensor prototype were determined.
