In quadrupeds,the cervical and lumbar circuits work together to achieve the speed-dependent gait expression.While most studies have focused on how local lumbar circuits regulate limb coordination and gaits,relatively ...In quadrupeds,the cervical and lumbar circuits work together to achieve the speed-dependent gait expression.While most studies have focused on how local lumbar circuits regulate limb coordination and gaits,relatively few studies are known about cervical circuits and even less about locomotor gaits.We use the previously published models by Danner et al.(DANNER,S.M.,SHEVTSOVA,N.A.,FRIGON,A.,and RYBAK,I.A.Computational modeling of spinal circuits controlling limb coordination and gaits in quadrupeds.e Life,6,e31050(2017))as a basis,and modify it by proposing an asymmetric organization of cervical and lumbar circuits.First,the model reproduces the typical speed-dependent gait expression in mice and more biologically appropriate locomotor parameters,including the gallop gait,locomotor frequencies,and limb coordination of the forelimbs.Then,the model replicates the locomotor features regulated by the M-current.The walk frequency increases with the M-current without affecting the interlimb coordination or gaits.Furthermore,the model reveals the interaction mechanism between the brainstem drive and ionic currents in regulating quadrupedal locomotion.Finally,the model demonstrates the dynamical properties of locomotor gaits.Trot and bound are identified as attractor gaits,walk as a semi-attractor gait,and gallop as a transitional gait,with predictable transitions between these gaits.The model suggests that cervical-lumbar circuits are asymmetrically recruited during quadrupedal locomotion,thereby providing new insights into the neural control of speed-dependent gait expression.展开更多
In recent decades,the properties and behaviors of nanofluidic devices have been widely explored in varied subjects such as engineering,physics,chemistry,and biology.Among the rich properties of nanofluidics,ionic curr...In recent decades,the properties and behaviors of nanofluidic devices have been widely explored in varied subjects such as engineering,physics,chemistry,and biology.Among the rich properties of nanofluidics,ionic current rectification(ICR) is a unique phenomenon arising from asymmetric nanofluidic devices with electric double layer(EDL) overlapped.The ICR property is especially useful in applications including energy conversion,mass separation,sea water purification and bioanalysis.In this review,the ICR property in nanofluidics as well as the underlying mechanism is demonstrated.The influencing factors concerning to the ICR property are systematically summarized.The asymmetric geometry as well as the charge distribution is in charge of the ICR behavior occurring in nanofluidic devices.This review is aimed at readers who are interested in the fundamentals of mass transport in nanofluidics in general,as well as those who are willing to apply nanofluidics in various research fields.展开更多
An equivalent relationship between electro magnetic flowmeters (EMFs) and the Hall effect is discussed in principle and three equivalent conclusions about their measuring equations are derived. Thereby,the calibratio...An equivalent relationship between electro magnetic flowmeters (EMFs) and the Hall effect is discussed in principle and three equivalent conclusions about their measuring equations are derived. Thereby,the calibration using the ionic current (CUIC) is introduced to the calibration of EMFs in a special Hall effect system. A basic system with these equations is specially given and discussed for realizing the method. Two key points about CUIC are proved by a simple experiment.展开更多
Experiments of poly（dT）20 electrophoresis throughα-hemolysin nanopores were performed to unveil the electrophoretic transport mechanism of DNA through nanopores in high concentration potassium chloride solution. It...Experiments of poly（dT）20 electrophoresis throughα-hemolysin nanopores were performed to unveil the electrophoretic transport mechanism of DNA through nanopores in high concentration potassium chloride solution. It is found that there are two obvious current blockades induced by poly（dT）20 translocation and collision events. Both blockade currents increase linearly with the applied bias voltage. However, the normalized blockade currents are almost kept the same although variable bias voltages are applied. The collision time of poly（dT）20 in the luminal site of the pore remains constant for different voltages. The translocation speed of poly（dT）20through the nanopore decreases with the increase of bias voltage. It is because as the potential increases, the drag force on the homopolymer helps it to crumple into a cluster much easier due to the poor stacking of thymine residues compared with homopolymers consisting of other nucleotides. Molecular dynamics simulations further confirm the experimental results. Increasing the applied bias voltage can slowdown the translocation velocity of the flexible poly（dT）20, which favors increasing the precision of single molecule detection by using nanopores.展开更多
Porous graphene has a high mechanical strength and an atomic-layer thickness that makes it a promising material for material separation and biomolecule sensing. Electrostatic interactions between charges in aqueous so...Porous graphene has a high mechanical strength and an atomic-layer thickness that makes it a promising material for material separation and biomolecule sensing. Electrostatic interactions between charges in aqueous solutions are a type of strong long-range interaction that may greatly influence fluid transport through nanopores. In this study, molecular dynamic simulations were conducted to investigate ion and water transport through 1.05-nm diameter monolayer graphene nanopores, with their edges charge-modified. Our results indicated that these nanopores are selective to counterions when they are charged. As the charge amount increases, the total ionic currents show an increase-decrease profile while the coion currents monotonically decrease. The co-ion rejection can reach 76.5% and 90.2% when the nanopores are negatively and positively charged, respectively. The Cl-ion current increases and reaches a plateau, and the Na＋current decreases as the charge amount increases in systems in which Na＋ions act as counterions. In addition, charge modification can enhance water transport through nanopores. This is mainly due to the ion selectivity of the nanopores. Notably, positive charges on the pore edges facilitate water transport much more strongly than negative charges.展开更多
In the field of robotics to enhance the interaction with humans in real-time and in the bioengineering field to develop prosthetic devices, the need for artificial skin is in high demand. In this work, the hydrogen-bo...In the field of robotics to enhance the interaction with humans in real-time and in the bioengineering field to develop prosthetic devices, the need for artificial skin is in high demand. In this work, the hydrogen-bonded complex network structure of the Pectin/PEG composite has been designed, resulting in the free-standing film functioning as a temperature-sensing device. With the gelation technique and the addition of PEG, the film’s flexibility and conductivity were enhanced. The fabricated device worked at a low voltage of 1 V supply with high throughput. With different dimensions, three devices were fabricated, and the maximum-induced ionic current was 34 µA ± 5%. The device has an average sensitivity of 1.3–2.7 µA/°C over the range of 30 °C to 42 °C. The device's fastest response time to sense the temperature change was 2 s ± 5%. The present device exhibits good stability for a long duration of time. These pectin/PEG films can be used as biomimetic skin to improve the efficiency in sensing the temperature.展开更多
Chemical oxygen demand （COD） is an important index to evaluate the water pollution level. The method of potassium dichromate is used as a national standard for determination of COD in China. Chloride is the most com...Chemical oxygen demand （COD） is an important index to evaluate the water pollution level. The method of potassium dichromate is used as a national standard for determination of COD in China. Chloride is the most common interference in COD determination process. In order to solve the problem, this paper analyzes the effect of chlorine ion on the determination ofCOD in principle. And then a kind of measurement system is designed based on the structure of nanometer glass probe, which achieves rapid measurement of the concentration of chloride ions within a larger range and provides a new technical solution for improving the accuracy of the COD measurement. Alter theoretical studies and experimental verification on the distractions in the process of ion current detection, the effects of probe diameter and bias voltage on the system measuring range and sensitivity are discussed.展开更多
Using compounds modified by the isotopes carbon-13 and nitrogen-15 helps conduct research in various fields of science, such as medicine, pharmacology, pharmacokinetics, metabolism, agriculture, and others. In the cas...Using compounds modified by the isotopes carbon-13 and nitrogen-15 helps conduct research in various fields of science, such as medicine, pharmacology, pharmacokinetics, metabolism, agriculture, and others. In the case of the availability of reliable, express, and cheap methods, the area of their use will gradually expand. A determination of the atomic fraction of the isotopes carbon-13 and nitrogen-15 directly in glycine, leucine, isoleucine, and alanine is proposed;the modification concerns all centers or one or more identical carbon and nitrogen centers separately, as well as both isotopes at the same time. There are defined mass lines of the mass spectrum of each amino acid, through which the isotopic content of carbon and nitrogen is calculated. The processes that must be taken into account for the determination of the isotopic content are also established. Isotopic analysis of these compounds until now was carried out by transforming them into carbon oxide, dioxide, and molecular nitrogen, and determination of their content in individual centers was impossible.展开更多
A systematic understanding of the mechanism in the rectification and capacitance of nanochannels and their regulation with the electrolyte concentration and electrical bias is pivotal for its wide applications to nano...A systematic understanding of the mechanism in the rectification and capacitance of nanochannels and their regulation with the electrolyte concentration and electrical bias is pivotal for its wide applications to nanofluidic electronics,ion separation,energy storage,and molecule sensing.Single unipolar and bipolar cylindrical nanochannels through polymer film were fabricated using single ion bombardment and track etching.Cyclic voltammetry results show that the bipolar nanochannel switches from rectification to capacitance as the electrolyte concentration decreases.Electrochemical impedance spectroscopy revealed that the capacitive impedance fraction in the bipolar nanochannel is regulated by electrolyte concentration and voltage.The switch from rectification to capacitance in the polymer nanochannel is well explained through a fluidic p-n junction model with a variable ion depletion layer regulated by the applied bias voltage,which is supported by the multi-physics simulation using Poisson-Nernst-Planck and Navier-Stokes solution.This work provides a mechanistic insight into the ionic current rectification and ionic capacitance in complex ionic nanochannels and paves the way for biomimetic nanofluidic electronics design.展开更多
Dysregulation of intracellular Ca2+ homeostasis is associated with various pathological conditions and arrhythmogenesis of the heart.The objective of this study was to investigate the effects of an acute increase in i...Dysregulation of intracellular Ca2+ homeostasis is associated with various pathological conditions and arrhythmogenesis of the heart.The objective of this study was to investigate the effects of an acute increase in intracellular Ca2+ concentration ([Ca2+] i) on the electrophysiology of ventricular myocytes by mimicking intracellular Ca 2+ overload.The [Ca2+] i was clamped to either a controlled (65-100 nmol L-1) or increased (1 μmol L-1) level.The transmembrane action potentials and ionic currents were recorded using whole-cell patch clamp techniques.We found that the acute increase in [Ca2+] i shortened the action potential duration,reduced the action potential amplitude,maximum depolarization velocity and resting membrane potential,caused delayed after-depolarizations (DADs),and triggered activity--compared with these parameters in the control.The increased [Ca2+] i augmented late I Na in a time-dependent manner,reduced ICaL and IK1,and increased IKr but not IKs.The results of this study can be used to explain calcium overload-induced ventricular arrhythmias.展开更多
The emergence of MoS_(2) nanopores has provided a new avenue for high performance DNA sequencing,which is critical for modem chemical/biological research and applications.Herein,molecular dynamics simulations were per...The emergence of MoS_(2) nanopores has provided a new avenue for high performance DNA sequencing,which is critical for modem chemical/biological research and applications.Herein,molecular dynamics simulations were performed to design a conceptual device to sequence DNA with MoS_(2) nanopores of different structures(e.g.,pore rim contained Mo atoms only,S atoms only,or both Mo and S atoms),where various unfolded single-stranded DNAs(ssDNAs)translocated through the nanopores driven by transmembrane bias;the sequence content was identified by the associating ionic current.All ssDNAs adsorbed onto the MoS_(2) surface and translocated through the nanopores by transmembrane electric field in a stepwise manner,where the pause between two permeation events was long enough for the DNA fragments in the nanopore to produce well-defined ionic blockage current to deduce the DNA’s base sequence.The transmembrane bias and DNA-MoS_(2) interaction could regulate the speed of the translocation process.Furthermore,the structure(atom constitution of the nanopore rim)of the nanopore considerably regulated both the translocate process and the ionic current.Thus,MoS_(2) nanopores could be employed to sequence DNA with the flexibility to regulate the translocation process and ionic current to yield the optimal sequencing performance.展开更多
Nanofluidics is a recent appearing research field, introduced in 1995 as an analogue of the field of microfluidics, and has been becoming popular in the past few years. The proximity of the channel dimension, the Deby...Nanofluidics is a recent appearing research field, introduced in 1995 as an analogue of the field of microfluidics, and has been becoming popular in the past few years. The proximity of the channel dimension, the Debye length, and the size of biomolecules such as DNA and proteins gives the unique features of nanofluidic devices. Of various unique properties of the nanofluidics, mass transport in nanochannel plays determining roles in fundamental reaches and practical applications of nanofluidic device. Thus, much work including numerical and experimental researches has been performed to investigate the mass transport behaviors in nanofluidic devices. This review summarizes the fabrication technologies for nanofluidic devices, the mass transport behaviors in nanochannel, and their applications in bioanalysis. The main focus will be laid on the effects of nanochannel size and surface charge on mass transport including electrokinetic transport of charged analytes, diffusion of electric neutral molecules, ionic current rectification, concentration polarization, nonlinear electrokinetic flow at the micro-nanofluidic interfaces.展开更多
Nanopore devices have attracted a lot of attention for their potential application in DNA sequencing. Here, we study how an occluding object placed near a nanopore affects its access resistance by integrating an atomi...Nanopore devices have attracted a lot of attention for their potential application in DNA sequencing. Here, we study how an occluding object placed near a nanopore affects its access resistance by integrating an atomic force microscopy with a nanopore sensor. It is found that there exists a critical hemisphere around the nanopore, inside which the tip of an atomic force microscopy will affect the ionic current. The radius of this hemisphere, which is a bit smaller than the theoretical capture radius of ions, increases linearly with the applied bias voltage and quadratically with the nanopore diameter, but is independent of the operation modes and scanning speeds of the atomic force microscopy. A theoretical model is also proposed to describe how the tip position and geometrical parameters affect the access resistance.展开更多
The conventional Poisson-Nernst-Planck equations do not account for the finite size of ions explicitly.This leads to solutions featuring unrealistically high ionic concentrations in the regions subject to external pot...The conventional Poisson-Nernst-Planck equations do not account for the finite size of ions explicitly.This leads to solutions featuring unrealistically high ionic concentrations in the regions subject to external potentials,in particular,near highly charged surfaces.A modified form of the Poisson-Nernst-Planck equations accounts for steric effects and results in solutions with finite ion concentrations.Here,we evaluate numerical methods for solving the modified Poisson-Nernst-Planck equations by modeling electric field-driven transport of ions through a nanopore.We describe a novel,robust finite element solver that combines the applications of the Newton’s method to the nonlinear Galerkin form of the equations,augmented with stabilization terms to appropriately handle the drift-diffusion processes.To make direct comparison with particle-based simulations possible,our method is specifically designed to produce solutions under periodic boundary conditions and to conserve the number of ions in the solution domain.We test our finite element solver on a set of challenging numerical experiments that include calculations of the ion distribution in a volume confined between two charged plates,calculations of the ionic current though a nanopore subject to an external electric field,and modeling the effect of a DNA molecule on the ion concentration and nanopore current.展开更多
基金Project supported by the National Natural Science Foundation of China(Nos.12272092 and 12332004)。
文摘In quadrupeds,the cervical and lumbar circuits work together to achieve the speed-dependent gait expression.While most studies have focused on how local lumbar circuits regulate limb coordination and gaits,relatively few studies are known about cervical circuits and even less about locomotor gaits.We use the previously published models by Danner et al.(DANNER,S.M.,SHEVTSOVA,N.A.,FRIGON,A.,and RYBAK,I.A.Computational modeling of spinal circuits controlling limb coordination and gaits in quadrupeds.e Life,6,e31050(2017))as a basis,and modify it by proposing an asymmetric organization of cervical and lumbar circuits.First,the model reproduces the typical speed-dependent gait expression in mice and more biologically appropriate locomotor parameters,including the gallop gait,locomotor frequencies,and limb coordination of the forelimbs.Then,the model replicates the locomotor features regulated by the M-current.The walk frequency increases with the M-current without affecting the interlimb coordination or gaits.Furthermore,the model reveals the interaction mechanism between the brainstem drive and ionic currents in regulating quadrupedal locomotion.Finally,the model demonstrates the dynamical properties of locomotor gaits.Trot and bound are identified as attractor gaits,walk as a semi-attractor gait,and gallop as a transitional gait,with predictable transitions between these gaits.The model suggests that cervical-lumbar circuits are asymmetrically recruited during quadrupedal locomotion,thereby providing new insights into the neural control of speed-dependent gait expression.
基金supported by the National Natural Science Foundation of China(Nos.21874155,21575163)the Natural Science Foundation of Jiangsu Province(No.BK20191316)+2 种基金the Double First-Class University Project(No.CPU2018GY25)the State Key Laboratory of Analytical Chemistry for Life Science(No.SKLACLS1919)the Qing-Lan Project ofjiangsu Province(2019)。
文摘In recent decades,the properties and behaviors of nanofluidic devices have been widely explored in varied subjects such as engineering,physics,chemistry,and biology.Among the rich properties of nanofluidics,ionic current rectification(ICR) is a unique phenomenon arising from asymmetric nanofluidic devices with electric double layer(EDL) overlapped.The ICR property is especially useful in applications including energy conversion,mass separation,sea water purification and bioanalysis.In this review,the ICR property in nanofluidics as well as the underlying mechanism is demonstrated.The influencing factors concerning to the ICR property are systematically summarized.The asymmetric geometry as well as the charge distribution is in charge of the ICR behavior occurring in nanofluidic devices.This review is aimed at readers who are interested in the fundamentals of mass transport in nanofluidics in general,as well as those who are willing to apply nanofluidics in various research fields.
文摘An equivalent relationship between electro magnetic flowmeters (EMFs) and the Hall effect is discussed in principle and three equivalent conclusions about their measuring equations are derived. Thereby,the calibration using the ionic current (CUIC) is introduced to the calibration of EMFs in a special Hall effect system. A basic system with these equations is specially given and discussed for realizing the method. Two key points about CUIC are proved by a simple experiment.
基金The National Natural Science Foundation of China(No.51435003,51375092)Research Program of Chongqing Municipal Education Commission(No.KJ1401030)+1 种基金the Research & Innovation Program for Graduate Student in Universities of Jiangsu Province(No.KYLX_0100)the Scientific Research Foundation of Graduate School of Southeast University(No.YBJJ1540)
文摘Experiments of poly（dT）20 electrophoresis throughα-hemolysin nanopores were performed to unveil the electrophoretic transport mechanism of DNA through nanopores in high concentration potassium chloride solution. It is found that there are two obvious current blockades induced by poly（dT）20 translocation and collision events. Both blockade currents increase linearly with the applied bias voltage. However, the normalized blockade currents are almost kept the same although variable bias voltages are applied. The collision time of poly（dT）20 in the luminal site of the pore remains constant for different voltages. The translocation speed of poly（dT）20through the nanopore decreases with the increase of bias voltage. It is because as the potential increases, the drag force on the homopolymer helps it to crumple into a cluster much easier due to the poor stacking of thymine residues compared with homopolymers consisting of other nucleotides. Molecular dynamics simulations further confirm the experimental results. Increasing the applied bias voltage can slowdown the translocation velocity of the flexible poly（dT）20, which favors increasing the precision of single molecule detection by using nanopores.
基金Project supported by the National Basic Research Program of China(Grant Nos.2011CB707601 and 2011CB707605)the National Natural Science Foundation of China(Grant No.50925519)+2 种基金the Fundamental Research Funds for the Central UniversitiesFunding of Jiangsu Provincial Innovation Program for Graduate Education,China(Grant No.CXZZ13 0087)the Scientific Research Foundation of Graduate School of Southeast University(Grant No.YBJJ 1322)
文摘Porous graphene has a high mechanical strength and an atomic-layer thickness that makes it a promising material for material separation and biomolecule sensing. Electrostatic interactions between charges in aqueous solutions are a type of strong long-range interaction that may greatly influence fluid transport through nanopores. In this study, molecular dynamic simulations were conducted to investigate ion and water transport through 1.05-nm diameter monolayer graphene nanopores, with their edges charge-modified. Our results indicated that these nanopores are selective to counterions when they are charged. As the charge amount increases, the total ionic currents show an increase-decrease profile while the coion currents monotonically decrease. The co-ion rejection can reach 76.5% and 90.2% when the nanopores are negatively and positively charged, respectively. The Cl-ion current increases and reaches a plateau, and the Na＋current decreases as the charge amount increases in systems in which Na＋ions act as counterions. In addition, charge modification can enhance water transport through nanopores. This is mainly due to the ion selectivity of the nanopores. Notably, positive charges on the pore edges facilitate water transport much more strongly than negative charges.
文摘In the field of robotics to enhance the interaction with humans in real-time and in the bioengineering field to develop prosthetic devices, the need for artificial skin is in high demand. In this work, the hydrogen-bonded complex network structure of the Pectin/PEG composite has been designed, resulting in the free-standing film functioning as a temperature-sensing device. With the gelation technique and the addition of PEG, the film’s flexibility and conductivity were enhanced. The fabricated device worked at a low voltage of 1 V supply with high throughput. With different dimensions, three devices were fabricated, and the maximum-induced ionic current was 34 µA ± 5%. The device has an average sensitivity of 1.3–2.7 µA/°C over the range of 30 °C to 42 °C. The device's fastest response time to sense the temperature change was 2 s ± 5%. The present device exhibits good stability for a long duration of time. These pectin/PEG films can be used as biomimetic skin to improve the efficiency in sensing the temperature.
基金National Natural Science Foundation of China(No.61072013)
文摘Chemical oxygen demand （COD） is an important index to evaluate the water pollution level. The method of potassium dichromate is used as a national standard for determination of COD in China. Chloride is the most common interference in COD determination process. In order to solve the problem, this paper analyzes the effect of chlorine ion on the determination ofCOD in principle. And then a kind of measurement system is designed based on the structure of nanometer glass probe, which achieves rapid measurement of the concentration of chloride ions within a larger range and provides a new technical solution for improving the accuracy of the COD measurement. Alter theoretical studies and experimental verification on the distractions in the process of ion current detection, the effects of probe diameter and bias voltage on the system measuring range and sensitivity are discussed.
文摘Using compounds modified by the isotopes carbon-13 and nitrogen-15 helps conduct research in various fields of science, such as medicine, pharmacology, pharmacokinetics, metabolism, agriculture, and others. In the case of the availability of reliable, express, and cheap methods, the area of their use will gradually expand. A determination of the atomic fraction of the isotopes carbon-13 and nitrogen-15 directly in glycine, leucine, isoleucine, and alanine is proposed;the modification concerns all centers or one or more identical carbon and nitrogen centers separately, as well as both isotopes at the same time. There are defined mass lines of the mass spectrum of each amino acid, through which the isotopic content of carbon and nitrogen is calculated. The processes that must be taken into account for the determination of the isotopic content are also established. Isotopic analysis of these compounds until now was carried out by transforming them into carbon oxide, dioxide, and molecular nitrogen, and determination of their content in individual centers was impossible.
基金supported by the National Key R&D Program of China(Grant No.2021YFA1601400)the National Natural Science Foundation of China(Grant Nos.12241201,1197283,12375287,and U1632271).
文摘A systematic understanding of the mechanism in the rectification and capacitance of nanochannels and their regulation with the electrolyte concentration and electrical bias is pivotal for its wide applications to nanofluidic electronics,ion separation,energy storage,and molecule sensing.Single unipolar and bipolar cylindrical nanochannels through polymer film were fabricated using single ion bombardment and track etching.Cyclic voltammetry results show that the bipolar nanochannel switches from rectification to capacitance as the electrolyte concentration decreases.Electrochemical impedance spectroscopy revealed that the capacitive impedance fraction in the bipolar nanochannel is regulated by electrolyte concentration and voltage.The switch from rectification to capacitance in the polymer nanochannel is well explained through a fluidic p-n junction model with a variable ion depletion layer regulated by the applied bias voltage,which is supported by the multi-physics simulation using Poisson-Nernst-Planck and Navier-Stokes solution.This work provides a mechanistic insight into the ionic current rectification and ionic capacitance in complex ionic nanochannels and paves the way for biomimetic nanofluidic electronics design.
基金supported by the National Natural Science Foundation of China(Grant No. 30870912)Department of Biology,Gilead Sciences,Inc.,USA.
文摘Dysregulation of intracellular Ca2+ homeostasis is associated with various pathological conditions and arrhythmogenesis of the heart.The objective of this study was to investigate the effects of an acute increase in intracellular Ca2+ concentration ([Ca2+] i) on the electrophysiology of ventricular myocytes by mimicking intracellular Ca 2+ overload.The [Ca2+] i was clamped to either a controlled (65-100 nmol L-1) or increased (1 μmol L-1) level.The transmembrane action potentials and ionic currents were recorded using whole-cell patch clamp techniques.We found that the acute increase in [Ca2+] i shortened the action potential duration,reduced the action potential amplitude,maximum depolarization velocity and resting membrane potential,caused delayed after-depolarizations (DADs),and triggered activity--compared with these parameters in the control.The increased [Ca2+] i augmented late I Na in a time-dependent manner,reduced ICaL and IK1,and increased IKr but not IKs.The results of this study can be used to explain calcium overload-induced ventricular arrhythmias.
基金The financial support from the Science and Technology Key Project of Guangdong Province(No.2020B010188002)Guangdong Natural Science Foundation(No.2019A1515011121)+5 种基金Guangzhou Technology Project(No.201804010219)the National Natural Science Foundation of China(Grant Nos.21908046 and 22078104)Hubei Natural Science Foundation(No.2019CFB293)Guangdong Basic and Applied Basic Research Foundation(No.2019A1515110706)State Key Laboratory of Pulp and Paper Engineering(No.SCUT201828)the Fundamental Research Funds for the Central Universities were gratefully acknowledged.
文摘The emergence of MoS_(2) nanopores has provided a new avenue for high performance DNA sequencing,which is critical for modem chemical/biological research and applications.Herein,molecular dynamics simulations were performed to design a conceptual device to sequence DNA with MoS_(2) nanopores of different structures(e.g.,pore rim contained Mo atoms only,S atoms only,or both Mo and S atoms),where various unfolded single-stranded DNAs(ssDNAs)translocated through the nanopores driven by transmembrane bias;the sequence content was identified by the associating ionic current.All ssDNAs adsorbed onto the MoS_(2) surface and translocated through the nanopores by transmembrane electric field in a stepwise manner,where the pause between two permeation events was long enough for the DNA fragments in the nanopore to produce well-defined ionic blockage current to deduce the DNA’s base sequence.The transmembrane bias and DNA-MoS_(2) interaction could regulate the speed of the translocation process.Furthermore,the structure(atom constitution of the nanopore rim)of the nanopore considerably regulated both the translocate process and the ionic current.Thus,MoS_(2) nanopores could be employed to sequence DNA with the flexibility to regulate the translocation process and ionic current to yield the optimal sequencing performance.
基金supported by the National Basic Research Program (2012CB933804)the National Natural Science Foundation of China (20890020, 20975047, 21035002)+2 种基金the National Science Fund for Creative Research Groups (21121091)Specialized Research Fund for the Doctoral Program of Higher Fducation (200802840012)the Natural Science Foundation of Jiangsu Province (BK2010009)
文摘Nanofluidics is a recent appearing research field, introduced in 1995 as an analogue of the field of microfluidics, and has been becoming popular in the past few years. The proximity of the channel dimension, the Debye length, and the size of biomolecules such as DNA and proteins gives the unique features of nanofluidic devices. Of various unique properties of the nanofluidics, mass transport in nanochannel plays determining roles in fundamental reaches and practical applications of nanofluidic device. Thus, much work including numerical and experimental researches has been performed to investigate the mass transport behaviors in nanofluidic devices. This review summarizes the fabrication technologies for nanofluidic devices, the mass transport behaviors in nanochannel, and their applications in bioanalysis. The main focus will be laid on the effects of nanochannel size and surface charge on mass transport including electrokinetic transport of charged analytes, diffusion of electric neutral molecules, ionic current rectification, concentration polarization, nonlinear electrokinetic flow at the micro-nanofluidic interfaces.
基金supported by the National Natural Science Foundation of China(Grants Nos.51435003&51375092)supported by the Fundamental Research Funds for the Central Universities+1 种基金the Innovative Project for Graduate Students of Jiangsu Province(Grant No.KYLX_0100)the Scientific Research Foundation of Graduate School of Southeast University(Grant No.YBJJ1540)
文摘Nanopore devices have attracted a lot of attention for their potential application in DNA sequencing. Here, we study how an occluding object placed near a nanopore affects its access resistance by integrating an atomic force microscopy with a nanopore sensor. It is found that there exists a critical hemisphere around the nanopore, inside which the tip of an atomic force microscopy will affect the ionic current. The radius of this hemisphere, which is a bit smaller than the theoretical capture radius of ions, increases linearly with the applied bias voltage and quadratically with the nanopore diameter, but is independent of the operation modes and scanning speeds of the atomic force microscopy. A theoretical model is also proposed to describe how the tip position and geometrical parameters affect the access resistance.
文摘The conventional Poisson-Nernst-Planck equations do not account for the finite size of ions explicitly.This leads to solutions featuring unrealistically high ionic concentrations in the regions subject to external potentials,in particular,near highly charged surfaces.A modified form of the Poisson-Nernst-Planck equations accounts for steric effects and results in solutions with finite ion concentrations.Here,we evaluate numerical methods for solving the modified Poisson-Nernst-Planck equations by modeling electric field-driven transport of ions through a nanopore.We describe a novel,robust finite element solver that combines the applications of the Newton’s method to the nonlinear Galerkin form of the equations,augmented with stabilization terms to appropriately handle the drift-diffusion processes.To make direct comparison with particle-based simulations possible,our method is specifically designed to produce solutions under periodic boundary conditions and to conserve the number of ions in the solution domain.We test our finite element solver on a set of challenging numerical experiments that include calculations of the ion distribution in a volume confined between two charged plates,calculations of the ionic current though a nanopore subject to an external electric field,and modeling the effect of a DNA molecule on the ion concentration and nanopore current.
