为研究野生与养殖小黄鱼群体的遗传多样性,基于mtDNA Cytb基因和D-loop控制区对舟山嵊泗海域(SS)和象山三门口海域(SMK)2个小黄鱼野生群体和1个养殖群体(YZ)的遗传结构与遗传分化等进行比较分析。序列分析结果显示,Cytb基因序列为841 bp...为研究野生与养殖小黄鱼群体的遗传多样性,基于mtDNA Cytb基因和D-loop控制区对舟山嵊泗海域(SS)和象山三门口海域(SMK)2个小黄鱼野生群体和1个养殖群体(YZ)的遗传结构与遗传分化等进行比较分析。序列分析结果显示,Cytb基因序列为841 bp,其A+T含量(50.2%)与C+G含量(49.8%)相似;D-loop区序列为629~635 bp,A+T含量(58.9%)远高于C+G含量(41.1%)。SS、SMK和YZ群体Cytb基因的单倍型数分别为26、27和12,SS和SMK群体共享2个单倍型(Hap1和Hap13),SMK和YZ群体共享1个单倍型(Hap41);SS、SMK和YZ群体D-loop区的单倍型数分别为27、30和10,SS和SMK群体共享1个单倍型(Hap4)。多样性分析结果显示,3个群体均属于高单倍型多样性(H_(d)>0.5),其中,SS和SMK群体单倍型多样性和核苷酸多样性高于YZ群体,表明野生群体多样性略高于养殖群体。遗传分化指数显示,2个小黄鱼野生群体间的分化程度极小,而养殖群体与野生群体间存在中度分化。遗传分化指数和AMOVA分析结果表明,群体内个体的变异是遗传变异的主要来源。Cytb基因和D-loop区序列中性检验结果中SS和SMK群体的Tajima s D值和Fu and Li s值均为负数,且Cytb基因的Tajima s D值和Fu and Li s值显著(P<0.05)偏离中性,表明2个野生群体有可能经历过群体扩张。单倍型系统发育树显示,SS、SMK和YZ群体均未表现出明显的地理聚集,群体间互有交叉,表明3个群体间的分化尚不明显。展开更多
Length frequency data of small yellow croaker （Larimichthys polyactis） were acquired from the survey vessel in May, July, September and December, 2011 in Haizhou Bay of China. In this study, 921 fish individuals wer...Length frequency data of small yellow croaker （Larimichthys polyactis） were acquired from the survey vessel in May, July, September and December, 2011 in Haizhou Bay of China. In this study, 921 fish individuals were analyzed for the estimation of growth and mortality parameters. Between length and weight, the power coefficient b was 2.7321, 2.9703, 3.0418 and 2.7252 for the 4 surveying months, respectively. The estimated von Bertalanffy growth function parameters were 230mm （L∞） and 0.26yr-1 （K） as were calculated with ELEFAN method equipped in FiSAT computer package. With length-converted catch curve analysis, the total mortality rate （Z） and its 95% confidence interval were 2.16 （1.69-2.64） yr-1, 0.59 （0.15-1.04） yr-1, 1.16 （0.80-1.52） yrl and 0.96 （0.70-1.23） yr1 for the 4 surveying months, respectively, with the pooled data the value was 1.15 （0.81-1.48） yr1. The natural mor- tality rate （M） was 0.516 yr 1 as was calculated with Pauly＇s equation （the annual average sea water temperature was 11 ℃）. Therefore, fish mortality rate was 0.634 yrz. The yield-per-recruit analysis indicated that when tc was 1, Fmax, was 0.7 and F01 was 0.55. Cur- rently, the age at first capture is about 1 year and Fcurrent was 0.634. Therefore, Fcurrent was larger than F0.1 and less than Fmax. This indicates that current fish mortality is at a dangerously high level. With Gulland method, the biological reference point for fishery （Fopt） was estimated as 0.516 yr1, lower than current fish mortality. Accordingly, reducing catch in the region was strongly recom- mended.展开更多
文摘为研究野生与养殖小黄鱼群体的遗传多样性,基于mtDNA Cytb基因和D-loop控制区对舟山嵊泗海域(SS)和象山三门口海域(SMK)2个小黄鱼野生群体和1个养殖群体(YZ)的遗传结构与遗传分化等进行比较分析。序列分析结果显示,Cytb基因序列为841 bp,其A+T含量(50.2%)与C+G含量(49.8%)相似;D-loop区序列为629~635 bp,A+T含量(58.9%)远高于C+G含量(41.1%)。SS、SMK和YZ群体Cytb基因的单倍型数分别为26、27和12,SS和SMK群体共享2个单倍型(Hap1和Hap13),SMK和YZ群体共享1个单倍型(Hap41);SS、SMK和YZ群体D-loop区的单倍型数分别为27、30和10,SS和SMK群体共享1个单倍型(Hap4)。多样性分析结果显示,3个群体均属于高单倍型多样性(H_(d)>0.5),其中,SS和SMK群体单倍型多样性和核苷酸多样性高于YZ群体,表明野生群体多样性略高于养殖群体。遗传分化指数显示,2个小黄鱼野生群体间的分化程度极小,而养殖群体与野生群体间存在中度分化。遗传分化指数和AMOVA分析结果表明,群体内个体的变异是遗传变异的主要来源。Cytb基因和D-loop区序列中性检验结果中SS和SMK群体的Tajima s D值和Fu and Li s值均为负数,且Cytb基因的Tajima s D值和Fu and Li s值显著(P<0.05)偏离中性,表明2个野生群体有可能经历过群体扩张。单倍型系统发育树显示,SS、SMK和YZ群体均未表现出明显的地理聚集,群体间互有交叉,表明3个群体间的分化尚不明显。
基金supported by the Fundamental Research Funds for Central Universities (Grant No. 201022001)
文摘Length frequency data of small yellow croaker （Larimichthys polyactis） were acquired from the survey vessel in May, July, September and December, 2011 in Haizhou Bay of China. In this study, 921 fish individuals were analyzed for the estimation of growth and mortality parameters. Between length and weight, the power coefficient b was 2.7321, 2.9703, 3.0418 and 2.7252 for the 4 surveying months, respectively. The estimated von Bertalanffy growth function parameters were 230mm （L∞） and 0.26yr-1 （K） as were calculated with ELEFAN method equipped in FiSAT computer package. With length-converted catch curve analysis, the total mortality rate （Z） and its 95% confidence interval were 2.16 （1.69-2.64） yr-1, 0.59 （0.15-1.04） yr-1, 1.16 （0.80-1.52） yrl and 0.96 （0.70-1.23） yr1 for the 4 surveying months, respectively, with the pooled data the value was 1.15 （0.81-1.48） yr1. The natural mor- tality rate （M） was 0.516 yr 1 as was calculated with Pauly＇s equation （the annual average sea water temperature was 11 ℃）. Therefore, fish mortality rate was 0.634 yrz. The yield-per-recruit analysis indicated that when tc was 1, Fmax, was 0.7 and F01 was 0.55. Cur- rently, the age at first capture is about 1 year and Fcurrent was 0.634. Therefore, Fcurrent was larger than F0.1 and less than Fmax. This indicates that current fish mortality is at a dangerously high level. With Gulland method, the biological reference point for fishery （Fopt） was estimated as 0.516 yr1, lower than current fish mortality. Accordingly, reducing catch in the region was strongly recom- mended.
