The soil-resident pathogen, Plasmodiophora brassicae, infects cruciferous crops, causing obligate parasitic clubroot disease and posing a significant threat to the Brassica vegetable industry in China. To learn more a...The soil-resident pathogen, Plasmodiophora brassicae, infects cruciferous crops, causing obligate parasitic clubroot disease and posing a significant threat to the Brassica vegetable industry in China. To learn more about its pathogenesis, we reported a Nanopore sequencing-derived25.3 Mb high-quality genome sequence of P. brassicae pathotype 4 strain(P.b 4). Comparing the P.b 4 genome with that of the published P.brassicae e3 genome(P.b e3) identified single nucleotide polymorphisms, structural variations, and small insertions and deletions. We then carried out RNA-sequencing of root samples from a clubroot-susceptible line at 5, 14, and 28 days after inoculation(DAI), and classified genes into five categories based on their expression patterns. Interestingly, 158 genes were highly expressed at 14 DAI, which were enriched in budding cell isotropic bud growth, ascospore wall assembly, spore wall assembly, spore wall biogenesis, and ascospore wall biogenesis.Subsequently, we bioinformatically predicted 555 secreted effector candidates, among which only 125 were expressed during infection and had amino acid lengths less than 400. The putative effector Pb010018, which was highly expressed at 14 DAI, was validated to have a signal peptide using a yeast secretion system. Luciferase activity and co-immunoprecipitation assays demonstrated that Pb010018 interacts with serine hydroxymethyltransferase BrSHMT1, and expression analysis showed that SHMT1 was upregulated in both Arabidopsis and B. rapa during infection. Furthermore, after infection, the Arabidopsis shmt1 mutant(atshmt1) showed reduced severity of clubroot disease, together with downregulated expression of Pb010018. Our results offer new insights into plant-pathogen interaction mechanisms, and provide the possibility for improving Brassica resistance to clubroot disease.展开更多
Brassica clubroot caused by Plasmodiophora brassicae has been identified as a severe soil-borne disease that poses a significant threat to plants root systems.The disease results in the formation of tumorous enlargeme...Brassica clubroot caused by Plasmodiophora brassicae has been identified as a severe soil-borne disease that poses a significant threat to plants root systems.The disease results in the formation of tumorous enlargements in the roots,leading to wilting and eventual plant death.Consequently,crop yield is drastically reduced,causing substantial economic losses in agriculture.The current study aims to provide a comprehensive overview of recent research process on Brassica clubroot,focusing on the biological characteristics,physiological race identification,and pathogenic mechanism of P.brassicae.Furthermore,it covers the latest advancements in the comprehensive prevention and clubroot control.The insights gained from this study are expected to contribute to the future research on clubroot and the development of resistance breeding strategies.展开更多
基金supported by the Youth Foundation of Beijing Academy of Agriculture and Forestry Sciences[Grant No.QNJJ202242]the Excellent Young Scholars of Beijing Academy of Agriculture and Forestry Sciences[Grant No.YXQN202205]+3 种基金the Beijing Nova Program[Grant No.20220484052]the National Natural Science Foundation of China[Grant No.31801852]the Collaborative Innovation Center of Beijing Academy of Agriculture and Forestry Sciences[Grant No.KJCX201907-2]the Earmarked Fund for China Agriculture Research System[Grant No.CARS-23-A-05].
文摘The soil-resident pathogen, Plasmodiophora brassicae, infects cruciferous crops, causing obligate parasitic clubroot disease and posing a significant threat to the Brassica vegetable industry in China. To learn more about its pathogenesis, we reported a Nanopore sequencing-derived25.3 Mb high-quality genome sequence of P. brassicae pathotype 4 strain(P.b 4). Comparing the P.b 4 genome with that of the published P.brassicae e3 genome(P.b e3) identified single nucleotide polymorphisms, structural variations, and small insertions and deletions. We then carried out RNA-sequencing of root samples from a clubroot-susceptible line at 5, 14, and 28 days after inoculation(DAI), and classified genes into five categories based on their expression patterns. Interestingly, 158 genes were highly expressed at 14 DAI, which were enriched in budding cell isotropic bud growth, ascospore wall assembly, spore wall assembly, spore wall biogenesis, and ascospore wall biogenesis.Subsequently, we bioinformatically predicted 555 secreted effector candidates, among which only 125 were expressed during infection and had amino acid lengths less than 400. The putative effector Pb010018, which was highly expressed at 14 DAI, was validated to have a signal peptide using a yeast secretion system. Luciferase activity and co-immunoprecipitation assays demonstrated that Pb010018 interacts with serine hydroxymethyltransferase BrSHMT1, and expression analysis showed that SHMT1 was upregulated in both Arabidopsis and B. rapa during infection. Furthermore, after infection, the Arabidopsis shmt1 mutant(atshmt1) showed reduced severity of clubroot disease, together with downregulated expression of Pb010018. Our results offer new insights into plant-pathogen interaction mechanisms, and provide the possibility for improving Brassica resistance to clubroot disease.
基金supported by the Science and Technology Talent Promotion Project(2023TJ-Z09)Innovation Program(2023RC1077,2023JJ40279)of Hunan Province,China.
文摘Brassica clubroot caused by Plasmodiophora brassicae has been identified as a severe soil-borne disease that poses a significant threat to plants root systems.The disease results in the formation of tumorous enlargements in the roots,leading to wilting and eventual plant death.Consequently,crop yield is drastically reduced,causing substantial economic losses in agriculture.The current study aims to provide a comprehensive overview of recent research process on Brassica clubroot,focusing on the biological characteristics,physiological race identification,and pathogenic mechanism of P.brassicae.Furthermore,it covers the latest advancements in the comprehensive prevention and clubroot control.The insights gained from this study are expected to contribute to the future research on clubroot and the development of resistance breeding strategies.
