BACKGROUND In December 2019,an ongoing outbreak of coronavirus disease 2019(COVID-19)was first identified in Wuhan,China.The characteristics of COVID-19 patients treated in local hospitals in Wuhan are not fully repre...BACKGROUND In December 2019,an ongoing outbreak of coronavirus disease 2019(COVID-19)was first identified in Wuhan,China.The characteristics of COVID-19 patients treated in local hospitals in Wuhan are not fully representative of patients outside Wuhan.Therefore,it is highly essential to analyze the epidemiological and clinical characteristics of COVID-19 in areas outside Wuhan or Hubei Province.To date,a limited number of studies have concentrated on the epidemiological and clinical characteristics of COVID-19 patients with different genders,clinical classification,and with or without basic diseases.AIM To study the epidemiological and clinical characteristics of COVID-19 patients in Hengyang(China)and provide a reliable reference for the prevention and control of COVID-19.METHODS From January 16 to March 2,2020,a total of 48 confirmed cases of COVID-19 were reported in Hengyang,and those cases were included in this study.The diagnostic criteria,clinical classification,and discharge standard related to COVID-19 were in line with the Diagnosis and Treatment Protocol for Novel Coronavirus Pneumonia(Trial Version 7)released by National Health Commission and National Administration of Traditional Chinese Medicine.The presence of SARS-CoV-2 in pharyngeal swab specimens was detected by quantitative reverse transcription polymerase chain reaction.All the data were imported into the excel worksheet and statistically analyzed by using SPSS 25.0 software.RESULTS A total of 48 cases of COVID-19 were collected,of which 1 was mild,38 were moderate,and 9 were severe.It was unveiled that there were 31(64.6%)male patients and 17(35.4%)female patients,with a female-to-male ratio of 1.82:1.The range of age of patients with COVID-19 was dominantly 30-49 years old[25(52.1%)of 48],followed by those aged over 60 years old[11(22.9%)].Besides,29.2%(14 of 48)of patients had basic diseases,and 57.2%(8 of 14)of patients with basic diseases were aged over 60 years old.The occupations of 48 COVID-19 patients were mainly farmers working in agricultural production[15(31.5%)of 48],rural migrant workers from Hengyang to Wuhan[15(31.5%)],and service workers operating in the service sector[8(16.7%)].The mean latent period was 6.86±3.57 d,and the median was 7[interquartile range(IQR):4-9]d.The mean time from onset of symptoms to the first physician visit was 3.38±2.98(95%CI:2.58-9.18)d,with a median of 2(IQR:1-5)d,and the mean time from hospital admission to confirmed diagnosis was 2.29±2.11(95%CI:1.18-6.42)d,with a median of 2(IQR:1-3)d.The main symptoms were fever[43(89.6%)of 48],cough and expectoration[41(85.4%)],fatigue[22(45.8%)],and chills[22(45.8%)].Other symptoms included poor appetite[13(27.1%)],sore throat[9(18.8%)],dyspnea[9(18.8%)],diarrhea[7(14.6%)],dizziness[5(10.4%)],headache[5(10.4%)],muscle pain[5(10.4%)],nausea and vomiting[4(8.3%)],hemoptysis[4(8.3%)],and runny nose[1(2.1%)].The numbers of peripheral blood leukocytes,lymphocytes,and eosinophils were significantly reduced in the majority of the patients.The levels of C-reactive protein,fibrinogen,blood glucose,lactate dehydrogenase,Ddimer,alanine aminotransferase(ALT),aspartate aminotransferase(AST),gamma-glutamyl transferase(γ-GT),myoglobin(MB),and creatine kinase(CK)were increased in 64.6%,44.7%,43.2%,37.0%,29.5%,22.9%,20.8%,21.6%,13.6%,and 12.8%of patients,respectively.The incidence of ALT elevation in male patients was remarkably higher than that in females(P<0.01),while the incidences of AST,CK,and blood glucose elevations in severe patients were remarkably higher than those in moderate patients(P<0.05,respectively).Except for the mild patients,chest computed tomography showed characteristic pulmonary lesions.All the patients received antiviral drugs,38(79.2%)accepted traditional Chinese medicine,and 2(4.2%)received treatment of human umbilical-cord mesenchymal stem cells.On March 2,2020,48 patients with COVID-19 were all cured and discharged.CONCLUSION Based on our results,patients with COVID-19 often have multiple organ dysfunction or damage.The incidences of ALT elevation in males,and AST,CK,and blood glucose elevations in severe patients are remarkably higher.展开更多
Objective：Previous studies have identified that kazrin is a constituent of desmosome and influences intercellular adhesion,growing development and morphology.We previously cloned another new isoform,kazrin F and foun...Objective：Previous studies have identified that kazrin is a constituent of desmosome and influences intercellular adhesion,growing development and morphology.We previously cloned another new isoform,kazrin F and found that it has anti-apoptotic effects on human glioma cell line.To further explore whether kazrin F is involved in tumorigenesis,we investigated its expression and role in cervical cancer（CC） cells.Methods：The role of kazrin F and miR-186 in CC was determined by 3-（4,5-dimethylthiazol-2-yl）-2,5-diphenyltetrazolium bromide（MTT） assay,colony formation,transwell,and apoptosis assays.Using enhanced green fluorescent protein（EGFP） reporter assays,reverse transcription-quantitative polymerase chain reaction（RT-qPCR） and western blot analysis,we identified kazrin F post-transcriptional regulation by miR-186.Results：We demonstrate that kazrin F is highly expressed in CC tissues compared with the adjacent noncancerous tissues and promotes cell proliferation,colony formation,migration and invasion in HeLa and C33 A cells by suppressing apoptosis and facilitating epithelial-to-mesenchymal transition（EMT）.Furthermore,miR-186 was confirmed as a regulator of kazrin F dysregulation.An EGFP reporter assay proved that miR-186 directly targets the 3＇-untranslated region（3＇UTR） of kazrin F and downregulates its expression,and miR-186 expression showed an inverse correlation with kazrin F levels in CC tissues.In addition,overexpression of miR-186 suppressed the malignant behaviors of CC cells.The ectopic expression of kazrin F rescued the inhibitory effects of miR-186.Conclusions：Our findings indicate that the upregulation of kazrin F due to downregulated miR-186 levels contributes to malignancy,and highlight the significance of kazrin F in CC tumorigenesis.展开更多
Background:Accurate mapping of forest canopy heights at a fine spatial resolution over large geographical areas is challenging.It is essential for the estimation of forest aboveground biomass and the evaluation of for...Background:Accurate mapping of forest canopy heights at a fine spatial resolution over large geographical areas is challenging.It is essential for the estimation of forest aboveground biomass and the evaluation of forest ecosystems.Yet current regional to national scale forest height maps were mainly produced at coarse-scale.Such maps lack spatial details for decision-making at local scales.Recent advances in remote sensing provide great opportunities to fill this gap.Method:In this study,we evaluated the utility of multi-source satellite data for mapping forest heights over Hunan Province in China.A total of 523 plot data collected from 2017 to 2018 were utilized for calibration and validation of forest height models.Specifically,the relationships between three types of in-situ measured tree heights(maximum-,averaged-,and basal area-weighted-tree heights)and plot-level remote sensing metrics(multispectral,radar,and topo variables from Landsat,Sentinel-1/PALSAR-2,and SRTM)were analyzed.Three types of models(multilinear regression,random forest,and support vector regression)were evaluated.Feature variables were selected by two types of variable selection approaches(stepwise regression and random forest).Model parameters and model performances for different models were tuned and evaluated via a 10-fold cross-validation approach.Then,tuned models were applied to generate wall-to-wall forest height maps for Hunan Province.Results:The best estimation of plot-level tree heights(R2 ranged from 0.47 to 0.52,RMSE ranged from 3.8 to 5.3 m,and rRMSE ranged from 28%to 31%)was achieved using the random forest model.A comparison with existing forest height maps showed similar estimates of mean height,however,the ranges varied under different definitions of forest and types of tree height.Conclusions:Primary results indicate that there are small biases in estimated heights at the province scale.This study provides a framework toward establishing regional to national scale maps of vertical forest structure.展开更多
Soybean(Glycine max)stands as a globally significant agricultural crop,and the comprehensive assembly of its genome is of paramount importance for unraveling its biological characteristics and evolutionary history.Nev...Soybean(Glycine max)stands as a globally significant agricultural crop,and the comprehensive assembly of its genome is of paramount importance for unraveling its biological characteristics and evolutionary history.Nevertheless,previous soybean genome assemblies have harbored gaps and incompleteness,which have constrained in-depth investigations into soybean.Here,we present Telomere-to-Telomere(T2T)assembly of the Chinese soybean cultivar Zhonghuang 13(ZH13)genome,termed ZH13-T2T,utilizing PacBio Hifi and ONT ultralong reads.We employed a multi-assembler approach,integrating Hifiasm,NextDenovo,and Canu,to minimize biases and enhance assembly accuracy.The assembly spans 1,015,024,879 bp,effectively resolving all 393 gaps that previously plagued the reference genome.Our annotation efforts identified 50,564 high-confidence protein-coding genes,707 of which are novel.ZH13-T2T revealed longer chromosomes,421 not-aligned regions(NARs),112 structure variations(SVs),and a substantial expansion of repetitive element compared to earlier assemblies.Specifically,we identified 25.67 Mb of tandem repeats,an enrichment of 5S and 48S rDNAs,and characterized their genotypic diversity.In summary,we deliver the first complete Chinese soybean cultivar T2T genome.The comprehensive annotation,along with precise centromere and telomere characterization,as well as insights into structural variations,further enhance our understanding of soybean genetics and evolution.展开更多
<div style="text-align:justify;"> Based on the detailed interpretation of high-accuracy 3D seismic data, the characteristics of regional unconformities, fracture systems, sedimentary filling and paleo-...<div style="text-align:justify;"> Based on the detailed interpretation of high-accuracy 3D seismic data, the characteristics of regional unconformities, fracture systems, sedimentary filling and paleo-stress field in Zhu 1 depression were comprehensively analyzed. The results showed that 2nd episode of Zhu-Qiong movement was an important tectonic transformation that occurred during rifting, basin structure patterns above and below the regional angular unconformity caused by 2nd episode had distinct differences. The orientations of those basin-controlling faults changed from NE, NEE to EW, NWW, which indicated that the paleo-stress field veered from NNW extension clockwise to sub-NS extension and basin structures patterns transformed from NE, NEE strong rifting to sub-EW, NWW weak rifting. The depocenter showed seesaw-like migration from S to N. And the sedimentary systems transformed from semi-deep-deep lacustrine facies to braided river delta facies developed in shore-shallow lacustrine. Combined with its tectonic recombination of periphery plates that period, the mechanism of above tectonic transformation had direct correspondence to the readjustment of the Indian plate and the Pacific plate. The southward subduction of the pro-to-south China Sea is the direct cause of this tectonic transformation. </div>展开更多
基金Supported by the Novel Coronavirus Pneumonia Emergency Project of University of South China,No.2020-15 and No.2020-25the Hengyang Science and Technology Plan Project-Basic Research Project of Prevention and Treatment of the Novel Coronavirus Pneumonia,No.202010031577+2 种基金the Scientific Research Project of Hunan Provincial Health and Family Planning Commission,No.A2017015the Natural Science Foundation of Hunan Province,China,No.2016JJ5010the National Natural Science Foundation of China,No.81373465.
文摘BACKGROUND In December 2019,an ongoing outbreak of coronavirus disease 2019(COVID-19)was first identified in Wuhan,China.The characteristics of COVID-19 patients treated in local hospitals in Wuhan are not fully representative of patients outside Wuhan.Therefore,it is highly essential to analyze the epidemiological and clinical characteristics of COVID-19 in areas outside Wuhan or Hubei Province.To date,a limited number of studies have concentrated on the epidemiological and clinical characteristics of COVID-19 patients with different genders,clinical classification,and with or without basic diseases.AIM To study the epidemiological and clinical characteristics of COVID-19 patients in Hengyang(China)and provide a reliable reference for the prevention and control of COVID-19.METHODS From January 16 to March 2,2020,a total of 48 confirmed cases of COVID-19 were reported in Hengyang,and those cases were included in this study.The diagnostic criteria,clinical classification,and discharge standard related to COVID-19 were in line with the Diagnosis and Treatment Protocol for Novel Coronavirus Pneumonia(Trial Version 7)released by National Health Commission and National Administration of Traditional Chinese Medicine.The presence of SARS-CoV-2 in pharyngeal swab specimens was detected by quantitative reverse transcription polymerase chain reaction.All the data were imported into the excel worksheet and statistically analyzed by using SPSS 25.0 software.RESULTS A total of 48 cases of COVID-19 were collected,of which 1 was mild,38 were moderate,and 9 were severe.It was unveiled that there were 31(64.6%)male patients and 17(35.4%)female patients,with a female-to-male ratio of 1.82:1.The range of age of patients with COVID-19 was dominantly 30-49 years old[25(52.1%)of 48],followed by those aged over 60 years old[11(22.9%)].Besides,29.2%(14 of 48)of patients had basic diseases,and 57.2%(8 of 14)of patients with basic diseases were aged over 60 years old.The occupations of 48 COVID-19 patients were mainly farmers working in agricultural production[15(31.5%)of 48],rural migrant workers from Hengyang to Wuhan[15(31.5%)],and service workers operating in the service sector[8(16.7%)].The mean latent period was 6.86±3.57 d,and the median was 7[interquartile range(IQR):4-9]d.The mean time from onset of symptoms to the first physician visit was 3.38±2.98(95%CI:2.58-9.18)d,with a median of 2(IQR:1-5)d,and the mean time from hospital admission to confirmed diagnosis was 2.29±2.11(95%CI:1.18-6.42)d,with a median of 2(IQR:1-3)d.The main symptoms were fever[43(89.6%)of 48],cough and expectoration[41(85.4%)],fatigue[22(45.8%)],and chills[22(45.8%)].Other symptoms included poor appetite[13(27.1%)],sore throat[9(18.8%)],dyspnea[9(18.8%)],diarrhea[7(14.6%)],dizziness[5(10.4%)],headache[5(10.4%)],muscle pain[5(10.4%)],nausea and vomiting[4(8.3%)],hemoptysis[4(8.3%)],and runny nose[1(2.1%)].The numbers of peripheral blood leukocytes,lymphocytes,and eosinophils were significantly reduced in the majority of the patients.The levels of C-reactive protein,fibrinogen,blood glucose,lactate dehydrogenase,Ddimer,alanine aminotransferase(ALT),aspartate aminotransferase(AST),gamma-glutamyl transferase(γ-GT),myoglobin(MB),and creatine kinase(CK)were increased in 64.6%,44.7%,43.2%,37.0%,29.5%,22.9%,20.8%,21.6%,13.6%,and 12.8%of patients,respectively.The incidence of ALT elevation in male patients was remarkably higher than that in females(P<0.01),while the incidences of AST,CK,and blood glucose elevations in severe patients were remarkably higher than those in moderate patients(P<0.05,respectively).Except for the mild patients,chest computed tomography showed characteristic pulmonary lesions.All the patients received antiviral drugs,38(79.2%)accepted traditional Chinese medicine,and 2(4.2%)received treatment of human umbilical-cord mesenchymal stem cells.On March 2,2020,48 patients with COVID-19 were all cured and discharged.CONCLUSION Based on our results,patients with COVID-19 often have multiple organ dysfunction or damage.The incidences of ALT elevation in males,and AST,CK,and blood glucose elevations in severe patients are remarkably higher.
基金supported in part by the National Natural Science Foundation of China(No.8157279091629302+1 种基金 31270818)the Natural Science Foundation of Tianjin (No.12JCZDJC25100,14JCYBJC26400,16JCYBJC42400)
文摘Objective：Previous studies have identified that kazrin is a constituent of desmosome and influences intercellular adhesion,growing development and morphology.We previously cloned another new isoform,kazrin F and found that it has anti-apoptotic effects on human glioma cell line.To further explore whether kazrin F is involved in tumorigenesis,we investigated its expression and role in cervical cancer（CC） cells.Methods：The role of kazrin F and miR-186 in CC was determined by 3-（4,5-dimethylthiazol-2-yl）-2,5-diphenyltetrazolium bromide（MTT） assay,colony formation,transwell,and apoptosis assays.Using enhanced green fluorescent protein（EGFP） reporter assays,reverse transcription-quantitative polymerase chain reaction（RT-qPCR） and western blot analysis,we identified kazrin F post-transcriptional regulation by miR-186.Results：We demonstrate that kazrin F is highly expressed in CC tissues compared with the adjacent noncancerous tissues and promotes cell proliferation,colony formation,migration and invasion in HeLa and C33 A cells by suppressing apoptosis and facilitating epithelial-to-mesenchymal transition（EMT）.Furthermore,miR-186 was confirmed as a regulator of kazrin F dysregulation.An EGFP reporter assay proved that miR-186 directly targets the 3＇-untranslated region（3＇UTR） of kazrin F and downregulates its expression,and miR-186 expression showed an inverse correlation with kazrin F levels in CC tissues.In addition,overexpression of miR-186 suppressed the malignant behaviors of CC cells.The ectopic expression of kazrin F rescued the inhibitory effects of miR-186.Conclusions：Our findings indicate that the upregulation of kazrin F due to downregulated miR-186 levels contributes to malignancy,and highlight the significance of kazrin F in CC tumorigenesis.
基金This work was funded by the Open Fund of State Key Laboratory of Remote Sensing Science(OFSLRSS201904)National Natural Science Foundation of China(41901351)+1 种基金Start-up Program of Wuhan University(2019-2021)Natural Science Foundation of Ningxia Province(2021AAC03017).
文摘Background:Accurate mapping of forest canopy heights at a fine spatial resolution over large geographical areas is challenging.It is essential for the estimation of forest aboveground biomass and the evaluation of forest ecosystems.Yet current regional to national scale forest height maps were mainly produced at coarse-scale.Such maps lack spatial details for decision-making at local scales.Recent advances in remote sensing provide great opportunities to fill this gap.Method:In this study,we evaluated the utility of multi-source satellite data for mapping forest heights over Hunan Province in China.A total of 523 plot data collected from 2017 to 2018 were utilized for calibration and validation of forest height models.Specifically,the relationships between three types of in-situ measured tree heights(maximum-,averaged-,and basal area-weighted-tree heights)and plot-level remote sensing metrics(multispectral,radar,and topo variables from Landsat,Sentinel-1/PALSAR-2,and SRTM)were analyzed.Three types of models(multilinear regression,random forest,and support vector regression)were evaluated.Feature variables were selected by two types of variable selection approaches(stepwise regression and random forest).Model parameters and model performances for different models were tuned and evaluated via a 10-fold cross-validation approach.Then,tuned models were applied to generate wall-to-wall forest height maps for Hunan Province.Results:The best estimation of plot-level tree heights(R2 ranged from 0.47 to 0.52,RMSE ranged from 3.8 to 5.3 m,and rRMSE ranged from 28%to 31%)was achieved using the random forest model.A comparison with existing forest height maps showed similar estimates of mean height,however,the ranges varied under different definitions of forest and types of tree height.Conclusions:Primary results indicate that there are small biases in estimated heights at the province scale.This study provides a framework toward establishing regional to national scale maps of vertical forest structure.
基金This work has been supported by the National Key Research and Development Program of China(2021YFF1200105)National Natural Science Foundation of China(62172125,62371161).
文摘Soybean(Glycine max)stands as a globally significant agricultural crop,and the comprehensive assembly of its genome is of paramount importance for unraveling its biological characteristics and evolutionary history.Nevertheless,previous soybean genome assemblies have harbored gaps and incompleteness,which have constrained in-depth investigations into soybean.Here,we present Telomere-to-Telomere(T2T)assembly of the Chinese soybean cultivar Zhonghuang 13(ZH13)genome,termed ZH13-T2T,utilizing PacBio Hifi and ONT ultralong reads.We employed a multi-assembler approach,integrating Hifiasm,NextDenovo,and Canu,to minimize biases and enhance assembly accuracy.The assembly spans 1,015,024,879 bp,effectively resolving all 393 gaps that previously plagued the reference genome.Our annotation efforts identified 50,564 high-confidence protein-coding genes,707 of which are novel.ZH13-T2T revealed longer chromosomes,421 not-aligned regions(NARs),112 structure variations(SVs),and a substantial expansion of repetitive element compared to earlier assemblies.Specifically,we identified 25.67 Mb of tandem repeats,an enrichment of 5S and 48S rDNAs,and characterized their genotypic diversity.In summary,we deliver the first complete Chinese soybean cultivar T2T genome.The comprehensive annotation,along with precise centromere and telomere characterization,as well as insights into structural variations,further enhance our understanding of soybean genetics and evolution.
文摘<div style="text-align:justify;"> Based on the detailed interpretation of high-accuracy 3D seismic data, the characteristics of regional unconformities, fracture systems, sedimentary filling and paleo-stress field in Zhu 1 depression were comprehensively analyzed. The results showed that 2nd episode of Zhu-Qiong movement was an important tectonic transformation that occurred during rifting, basin structure patterns above and below the regional angular unconformity caused by 2nd episode had distinct differences. The orientations of those basin-controlling faults changed from NE, NEE to EW, NWW, which indicated that the paleo-stress field veered from NNW extension clockwise to sub-NS extension and basin structures patterns transformed from NE, NEE strong rifting to sub-EW, NWW weak rifting. The depocenter showed seesaw-like migration from S to N. And the sedimentary systems transformed from semi-deep-deep lacustrine facies to braided river delta facies developed in shore-shallow lacustrine. Combined with its tectonic recombination of periphery plates that period, the mechanism of above tectonic transformation had direct correspondence to the readjustment of the Indian plate and the Pacific plate. The southward subduction of the pro-to-south China Sea is the direct cause of this tectonic transformation. </div>
