Coronaviruses(CoVs)are a large family of human and animal pathogens that cause significant health and economic burdens worldwide.Thapsigargin(Tg)is a plant-derived sesquiterpene lactone with potent antiviral effects;h...Coronaviruses(CoVs)are a large family of human and animal pathogens that cause significant health and economic burdens worldwide.Thapsigargin(Tg)is a plant-derived sesquiterpene lactone with potent antiviral effects;however,the underlying mechanism remains unclear.Here,we show that Tg exhibited strong antiviral activity against the neurotropic swine CoV porcine hemagglutinating encephalomyelitis virus(PHEV)both in vivo and in vitro.Tg also exhibited inhibitory activity against other three swine coronaviruses in cell lines.Specifically,Tg treatment significantly inhibited the replication and transcription of genomic RNA in the viral life cycle but did not directly inactivate PHEV.Transcriptome analysis and glycolysis/mitochondrial stress testing confirmed that Tg alters intracellular metabolic flux,and suppresses glycolysis and oxidative phosphorylation(OXPHOS).Furthermore,metabolic reprogramming is associated with the antiviral effect of Tg and is required for productive PHEV infection.Overall,our findings highlight that Tg plays a crucial role in combating viral infections by targeting host energy metabolism shared by pathogenic microorganisms,suggesting that targeting key nodes of host metabolic processes may be a strategy for designing antiviral drugs against coronaviruses.展开更多
Nanoconfinement is a promising approach to simultaneously enhance the thermodynamics,kinetics,and cycling stability of hydrogen storage materials.The introduction of supporting scaffolds usually causes a reduction in ...Nanoconfinement is a promising approach to simultaneously enhance the thermodynamics,kinetics,and cycling stability of hydrogen storage materials.The introduction of supporting scaffolds usually causes a reduction in the total hydrogen storage capacity due to“dead weight.”Here,we synthesize an optimized N-doped porous carbon(rN-pC)without heavy metal as supporting scaffold to confine Mg/MgH_(2) nanoparticles(Mg/MgH_(2)@rN-pC).rN-pC with 60 wt%loading capacity of Mg(denoted as 60 Mg@rN-pC)can adsorb and desorb 0.62 wt%H_(2) on the rN-pC scaffold.The nanoconfined MgH_(2) can be chemically dehydrided at 175℃,providing~3.59 wt%H_(2) with fast kinetics(fully dehydrogenated at 300℃ within 15 min).This study presents the first realization of nanoconfined Mg-based system with adsorption-active scaffolds.Besides,the nanoconfined MgH_(2) formation enthalpy is reduced to~68 kJ mol^(−1) H_(2) from~75 kJ mol^(−1) H_(2) for pure MgH_(2).The composite can be also compressed to nanostructured pellets,with volumetric H_(2) density reaching 33.4 g L^(−1) after 500 MPa compression pressure,which surpasses the 24 g L^(−1) volumetric capacity of 350 bar compressed H_(2).Our approach can be implemented to the design of hybrid H_(2) storage materials with enhanced capacity and desorption rate.展开更多
With the depletion of fossil fuels and global warming,there is an urgent demand to seek green,low-cost,and high-efficiency energy resources.Hydrogen has been considered as a potential candidate to replace fossil fuels...With the depletion of fossil fuels and global warming,there is an urgent demand to seek green,low-cost,and high-efficiency energy resources.Hydrogen has been considered as a potential candidate to replace fossil fuels,due to its high gravimetric energy density(142 MJ kg^(-1)),high abundance(H_(2)O),and environmentalfriendliness.However,due to its low volume density,effective and safe hydrogen storage techniques are now becoming the bottleneck for the"hydrogen economy".Under such a circumstance,Mg-based hydrogen storage materials garnered tremendous interests due to their high hydrogen storage capacity(~7.6 wt%for MgH_(2)),low cost,and excellent reversibility.However,the high thermodynamic stability(ΔH=-74.7 kJ mol^(-1)H_(2))and sluggish kinetics result in a relatively high desorption temperature(>300℃),which severely restricts widespread applications of MgH_(2).Nano-structuring has been proven to be an effective strategy that can simultaneously enhance the ab/de-sorption thermodynamic and kinetic properties of MgH_(2),possibly meeting the demand for rapid hydrogen desorption,economic viability,and effective thermal management in practical applications.Herein,the fundamental theories,recent advances,and practical applications of the nanostructured Mg-based hydrogen storage materials are discussed.The synthetic strategies are classified into four categories:free-standing nano-sized Mg/MgH_(2)through electrochemical/vapor-transport/ultrasonic methods,nanostructured Mg-based composites via mechanical milling methods,construction of core-shell nano-structured Mg-based composites by chemical reduction approaches,and multi-dimensional nano-sized Mg-based heterostructure by nanoconfinement strategy.Through applying these strategies,near room temperature ab/de-sorption(<100℃)with considerable high capacity(>6 wt%)has been achieved in nano Mg/MgH_(2)systems.Some perspectives on the future research and development of nanostructured hydrogen storage materials are also provided.展开更多
Objective： The effects of hydraulic pressure on renal tubular epithelial-myofibroblast transdifferentiation （TEMT） were investigated. Methods： We applied hydraulic pressure （50 cmH2O） to normal rat kidney tubula...Objective： The effects of hydraulic pressure on renal tubular epithelial-myofibroblast transdifferentiation （TEMT） were investigated. Methods： We applied hydraulic pressure （50 cmH2O） to normal rat kidney tubular epithelial cells （NRK52E） for different durations. Furthermore, different pressure magnitudes were applied to cells. The morphology, cytoskeleton, and expression ofmyofibroblastic marker protein and transforming growth factor-β1 （TGF-β1） of NRK52E cells were examined. Results Disorganized actin filaments and formation of curling clusters in actin were seen in the cytoplasm of pressurized cells. We verified that de novo expression α-smooth muscle actin induced by pressure, which indicated TEMT, was dependent on both the magnitude and duration of pressure. TGF-β1 expression was significantly upregulated under certain conditions, which implies that the induction of TEMT by hydraulic pressure is related with TGF-β1. Conclusion： We illustrate for the first time that hydraulic pressure can induce TEMT in a pressure magnitude- and duration-dependent manner, and that this TEMT is accompanied by TGF-β1 secretion.展开更多
Twenty-five species of Mesopolobus Westwood are recognized from China, of which four species are reported as new to science, M. tongi Xiao, sp. nov., M. changbaicus Xiao, sp. nov., M. equivenae Sun ＆ Xiao, sp. nov. a...Twenty-five species of Mesopolobus Westwood are recognized from China, of which four species are reported as new to science, M. tongi Xiao, sp. nov., M. changbaicus Xiao, sp. nov., M. equivenae Sun ＆ Xiao, sp. nov. and M. beilingicus Sun ＆ Xiao, sp. nov. and fifteen species are newly recorded from China. A key to Chinese Mesopolobus and illustration of external features of the species are provided.展开更多
Total saponins of Panax notoginseng （PNS） have been shown to ameliorate renal interstitial fibrosis. Ginsenoside Rg 1, a panaxatriol saponin, is one of the major active molecules from PNS. The present study was unde...Total saponins of Panax notoginseng （PNS） have been shown to ameliorate renal interstitial fibrosis. Ginsenoside Rg 1, a panaxatriol saponin, is one of the major active molecules from PNS. The present study was undertaken to investigate the effect of ginsenoside Rgl on renal fibrosis in rats with unilateral ureteral obstruction （UUO）. The rats were randomly divided into 3 groups： sham-operation （n=15）, UUO （n=15） and UUO with ginsenoside Rgl treatment （n=15, 50 mg per kg body weight, intraperitoneally （i.p.） injected）. The rats were sacrificed on Days 7 and 14 after the surgery. Histological examination demonstrated that ginsenoside Rgl significantly inhibited interstitial fibrosis including tubular injury as well as collagen deposition, u-smooth muscle actin （α-SMA） and E-cadherin are two markers of tubular epithelial-myofibroblast transition （TEMT）. Interestingly, ginsenoside Rgl notably decreased α-SMA expression and simultaneously enhanced E-cadherin expression. The messenger RNA （mRNA） of transforming growth factor-β1 （TGF-β1）, a key mediator to regulate TEMT, in the obstructed kidney increased dramatically, but was found to decrease significantly after administration of ginsenoside Rg 1. Further study showed that ginsenoside Rgl considerably decreased the levels of both active TGF-β1 and phosphorylated Smad2 （pSmad2）. Moreover, ginsenoside Rgl substantially suppressed the expression of thrombospondin-1 （TSP-1）, a cytokine which can promote the transcription of TGF-β1 mRNA and the activation of latent TGF-β1. These results suggest that ginsenoside Rgl inhibits renal interstitial fibrosis in rats with UUO. The mechanism might be partly related to the blocking of TEMT via suppressing the expression of TSP-1.展开更多
MgH_(2) is a promising high-capacity solid-state hydrogen storage material,while its application is greatly hindered by the high desorption temperature and sluggish kinetics.Herein,intertwined 2D oxygen vacancy-rich V...MgH_(2) is a promising high-capacity solid-state hydrogen storage material,while its application is greatly hindered by the high desorption temperature and sluggish kinetics.Herein,intertwined 2D oxygen vacancy-rich V_(2)O_(5) nanosheets(H-V_(2)O_(5))are specifically designed and used as catalysts to improve the hydrogen storage properties of MgH_(2).The as-prepared MgH_(2)-H-V_(2)O_(5) composites exhibit low desorption temperatures(Tonset=185℃)with a hydrogen capacity of 6.54 wt%,fast kinetics(Ea=84.55±1.37 kJ mol^(-1) H_(2) for desorption),and long cycling stability.Impressively,hydrogen absorption can be achieved at a temperature as low as 30℃ with a capacity of 2.38 wt%within 60 min.Moreover,the composites maintain a capacity retention rate of~99%after 100 cycles at 275℃.Experimental studies and theoretical calculations demonstrate that the in-situ formed VH_(2)/V catalysts,unique 2D structure of H-V_(2)O_(5) nanosheets,and abundant oxygen vacancies positively contribute to the improved hydrogen sorption properties.Notably,the existence of oxygen vacancies plays a double role,which could not only directly accelerate the hydrogen ab/de-sorption rate of MgH_(2),but also indirectly affect the activity of the catalytic phase VH_(2)/V,thereby further boosting the hydrogen storage performance of MgH_(2).This work highlights an oxygen vacancy excited“hydrogen pump”effect of VH_(2)/V on the hydrogen sorption of Mg/MgH_(2).The strategy developed here may pave a new way toward the development of oxygen vacancy-rich transition metal oxides catalyzed hydride systems.展开更多
In the present study, we examined the codon usage bias between pseudorabies virus （PRV） US1 gene and the USl-like genes of 20 reference alphaherpesviruses. Comparative analysis showed noticeable disparities of the s...In the present study, we examined the codon usage bias between pseudorabies virus （PRV） US1 gene and the USl-like genes of 20 reference alphaherpesviruses. Comparative analysis showed noticeable disparities of the synonymous codon usage bias in the 21 alphaherpesviruses, indicated by codon adaptation index, effective number of codons （ENc） and GC3s value. The codon usage pattern of PRV US1 gene was phylogenetically conserved and similar to that of the USl-like genes of the genus Varicellovirus of alphaherpesvirus, with a strong bias towards the codons with C and G at the third codon position. Cluster analysis of codon usage pattern of PRV US1 gene with its reference alphaherpesviruses demonstrated that the codon usage bias of USl-like genes of 21 alphaherpesviruses had a very close relation with their gene functions. ENc-plot revealed that the genetic heterogeneity in PRV US1 gene and the 20 reference alphaherpesviruses was constrained by G＋C content, as well as the gene length. In addition, comparison of codon preferences in the US1 gene of PRV with those ofE. coli, yeast and human revealed that there were 50 codons showing distinct usage differences between PRV and yeast, 49 between PRV and human, but 48 between PRV and E. coil Although there were slightly fewer differences in codon usages between E.coli and PRV, the difference is unlikely to be statistically significant, and experimental studies are necessary to establish the most suitable expression system for PRV US1. In conclusion, these results may improve our understanding of the evolution, pathogenesis and functional studies of PRV, as well as contributing to the area of herpesvirus research or even studies with other viruses.展开更多
基金supported by the National Key Research and Development Program of China under Grant 2022YFD1801400 to Zi Lithe National Natural Science Foundation of China under Grants 32302851 to Junchao Shi,32272956 to Zi Li,32172828 to Wenqi Hethe Natural Science Foundation Project of Jilin Province under Grant 20240101014JC to Zi Li.
文摘Coronaviruses(CoVs)are a large family of human and animal pathogens that cause significant health and economic burdens worldwide.Thapsigargin(Tg)is a plant-derived sesquiterpene lactone with potent antiviral effects;however,the underlying mechanism remains unclear.Here,we show that Tg exhibited strong antiviral activity against the neurotropic swine CoV porcine hemagglutinating encephalomyelitis virus(PHEV)both in vivo and in vitro.Tg also exhibited inhibitory activity against other three swine coronaviruses in cell lines.Specifically,Tg treatment significantly inhibited the replication and transcription of genomic RNA in the viral life cycle but did not directly inactivate PHEV.Transcriptome analysis and glycolysis/mitochondrial stress testing confirmed that Tg alters intracellular metabolic flux,and suppresses glycolysis and oxidative phosphorylation(OXPHOS).Furthermore,metabolic reprogramming is associated with the antiviral effect of Tg and is required for productive PHEV infection.Overall,our findings highlight that Tg plays a crucial role in combating viral infections by targeting host energy metabolism shared by pathogenic microorganisms,suggesting that targeting key nodes of host metabolic processes may be a strategy for designing antiviral drugs against coronaviruses.
基金supported by the National Key R&D Program of China(2022YFB3803700)National Natural Science Foundation of China(52171186)+1 种基金Young Elite Scientists Sponsorship Program by CAST(2023QNRC001)support from“Zhiyuan Honor Program”for doctoral students,Shanghai Jiao Tong University.
文摘Nanoconfinement is a promising approach to simultaneously enhance the thermodynamics,kinetics,and cycling stability of hydrogen storage materials.The introduction of supporting scaffolds usually causes a reduction in the total hydrogen storage capacity due to“dead weight.”Here,we synthesize an optimized N-doped porous carbon(rN-pC)without heavy metal as supporting scaffold to confine Mg/MgH_(2) nanoparticles(Mg/MgH_(2)@rN-pC).rN-pC with 60 wt%loading capacity of Mg(denoted as 60 Mg@rN-pC)can adsorb and desorb 0.62 wt%H_(2) on the rN-pC scaffold.The nanoconfined MgH_(2) can be chemically dehydrided at 175℃,providing~3.59 wt%H_(2) with fast kinetics(fully dehydrogenated at 300℃ within 15 min).This study presents the first realization of nanoconfined Mg-based system with adsorption-active scaffolds.Besides,the nanoconfined MgH_(2) formation enthalpy is reduced to~68 kJ mol^(−1) H_(2) from~75 kJ mol^(−1) H_(2) for pure MgH_(2).The composite can be also compressed to nanostructured pellets,with volumetric H_(2) density reaching 33.4 g L^(−1) after 500 MPa compression pressure,which surpasses the 24 g L^(−1) volumetric capacity of 350 bar compressed H_(2).Our approach can be implemented to the design of hybrid H_(2) storage materials with enhanced capacity and desorption rate.
基金support from the National Key Research&Development Program(2022YFB3803700)of ChinaNational Natural Science Foundation(No.52171186)financial support from the Center of Hydrogen Science,Shanghai Jiao Tong University。
文摘With the depletion of fossil fuels and global warming,there is an urgent demand to seek green,low-cost,and high-efficiency energy resources.Hydrogen has been considered as a potential candidate to replace fossil fuels,due to its high gravimetric energy density(142 MJ kg^(-1)),high abundance(H_(2)O),and environmentalfriendliness.However,due to its low volume density,effective and safe hydrogen storage techniques are now becoming the bottleneck for the"hydrogen economy".Under such a circumstance,Mg-based hydrogen storage materials garnered tremendous interests due to their high hydrogen storage capacity(~7.6 wt%for MgH_(2)),low cost,and excellent reversibility.However,the high thermodynamic stability(ΔH=-74.7 kJ mol^(-1)H_(2))and sluggish kinetics result in a relatively high desorption temperature(>300℃),which severely restricts widespread applications of MgH_(2).Nano-structuring has been proven to be an effective strategy that can simultaneously enhance the ab/de-sorption thermodynamic and kinetic properties of MgH_(2),possibly meeting the demand for rapid hydrogen desorption,economic viability,and effective thermal management in practical applications.Herein,the fundamental theories,recent advances,and practical applications of the nanostructured Mg-based hydrogen storage materials are discussed.The synthetic strategies are classified into four categories:free-standing nano-sized Mg/MgH_(2)through electrochemical/vapor-transport/ultrasonic methods,nanostructured Mg-based composites via mechanical milling methods,construction of core-shell nano-structured Mg-based composites by chemical reduction approaches,and multi-dimensional nano-sized Mg-based heterostructure by nanoconfinement strategy.Through applying these strategies,near room temperature ab/de-sorption(<100℃)with considerable high capacity(>6 wt%)has been achieved in nano Mg/MgH_(2)systems.Some perspectives on the future research and development of nanostructured hydrogen storage materials are also provided.
基金Project (No. 2007CB947802) supported by National Basic Research Program of China
文摘Objective： The effects of hydraulic pressure on renal tubular epithelial-myofibroblast transdifferentiation （TEMT） were investigated. Methods： We applied hydraulic pressure （50 cmH2O） to normal rat kidney tubular epithelial cells （NRK52E） for different durations. Furthermore, different pressure magnitudes were applied to cells. The morphology, cytoskeleton, and expression ofmyofibroblastic marker protein and transforming growth factor-β1 （TGF-β1） of NRK52E cells were examined. Results Disorganized actin filaments and formation of curling clusters in actin were seen in the cytoplasm of pressurized cells. We verified that de novo expression α-smooth muscle actin induced by pressure, which indicated TEMT, was dependent on both the magnitude and duration of pressure. TGF-β1 expression was significantly upregulated under certain conditions, which implies that the induction of TEMT by hydraulic pressure is related with TGF-β1. Conclusion： We illustrate for the first time that hydraulic pressure can induce TEMT in a pressure magnitude- and duration-dependent manner, and that this TEMT is accompanied by TGF-β1 secretion.
基金supported by the Presidential Foundation of the CAS,Ministry of Science and Technology of China(2012FY111100,2011FY120200)the National Natural Science Foundation of China(31372238)the Knowledge Innovation Program of the Chinese Academy of Sciences(KSCX2-EW-Z-8)
文摘Twenty-five species of Mesopolobus Westwood are recognized from China, of which four species are reported as new to science, M. tongi Xiao, sp. nov., M. changbaicus Xiao, sp. nov., M. equivenae Sun ＆ Xiao, sp. nov. and M. beilingicus Sun ＆ Xiao, sp. nov. and fifteen species are newly recorded from China. A key to Chinese Mesopolobus and illustration of external features of the species are provided.
基金Guangxi University of Traditional Chinese Medicine Postgraduate Education Innovation Project (Grant No. YCBXJ2022009)Guilin Science and Technology Bureau (Grant No. 2020011208-5)National Natural Science Foundation of China (Grant No. 81973768)。
文摘随着干细胞在阿尔茨海默病的研究越来越多,这项研究已经成为该领域的研究热点。干细胞疗法是最具前景的一种治疗方法。本研究通过文献计量学可视化分析,以探索干细胞在阿尔茨海默病的研究热点和趋势。构建干细胞对阿尔茨海默病研究的检索式,数据来自Web of Science Core Collection database,使用Cite Space和VOS viewer软件对2002至2021年的文献数据进行分析。干细胞对AD的研究涉及94个国家/地区,共有3629个机构参与,每年呈上升趋势,其中美国和中国是主要的研究国家。Takahashi团队首次培养出诱导多能干细胞,成为众多研究者理论的来源。University of California System是研究成果影响最大的机构, Plos One是最受欢迎的期刊, Maiese发现SIRT1是AD的治疗靶点,并且他的研究成果最多。研究重点包括Brain,Dentate gyrus,Amyloid-beta,Oxidative stress,Neurodegeneration,Inflammation,Pluripotent stem cells, Neural stem cells, Microglia。我们的研究揭示了干细胞在AD中的全球研究趋势,目前研究的热点是诱导多能干细胞模型在AD中的研究,为该领域的研究工作者提高了重要的信息和参考。
基金Project (No. 30170437) supported by the National Natural Science Foundation of China
文摘Total saponins of Panax notoginseng （PNS） have been shown to ameliorate renal interstitial fibrosis. Ginsenoside Rg 1, a panaxatriol saponin, is one of the major active molecules from PNS. The present study was undertaken to investigate the effect of ginsenoside Rgl on renal fibrosis in rats with unilateral ureteral obstruction （UUO）. The rats were randomly divided into 3 groups： sham-operation （n=15）, UUO （n=15） and UUO with ginsenoside Rgl treatment （n=15, 50 mg per kg body weight, intraperitoneally （i.p.） injected）. The rats were sacrificed on Days 7 and 14 after the surgery. Histological examination demonstrated that ginsenoside Rgl significantly inhibited interstitial fibrosis including tubular injury as well as collagen deposition, u-smooth muscle actin （α-SMA） and E-cadherin are two markers of tubular epithelial-myofibroblast transition （TEMT）. Interestingly, ginsenoside Rgl notably decreased α-SMA expression and simultaneously enhanced E-cadherin expression. The messenger RNA （mRNA） of transforming growth factor-β1 （TGF-β1）, a key mediator to regulate TEMT, in the obstructed kidney increased dramatically, but was found to decrease significantly after administration of ginsenoside Rg 1. Further study showed that ginsenoside Rgl considerably decreased the levels of both active TGF-β1 and phosphorylated Smad2 （pSmad2）. Moreover, ginsenoside Rgl substantially suppressed the expression of thrombospondin-1 （TSP-1）, a cytokine which can promote the transcription of TGF-β1 mRNA and the activation of latent TGF-β1. These results suggest that ginsenoside Rgl inhibits renal interstitial fibrosis in rats with UUO. The mechanism might be partly related to the blocking of TEMT via suppressing the expression of TSP-1.
基金the support from the National Key Research&Development Program(2022YFB3803700)of ChinaNational Natural Science Foundation(No.52171186)the financial support from the Center of Hydrogen Science,Shanghai Jiao Tong University。
文摘MgH_(2) is a promising high-capacity solid-state hydrogen storage material,while its application is greatly hindered by the high desorption temperature and sluggish kinetics.Herein,intertwined 2D oxygen vacancy-rich V_(2)O_(5) nanosheets(H-V_(2)O_(5))are specifically designed and used as catalysts to improve the hydrogen storage properties of MgH_(2).The as-prepared MgH_(2)-H-V_(2)O_(5) composites exhibit low desorption temperatures(Tonset=185℃)with a hydrogen capacity of 6.54 wt%,fast kinetics(Ea=84.55±1.37 kJ mol^(-1) H_(2) for desorption),and long cycling stability.Impressively,hydrogen absorption can be achieved at a temperature as low as 30℃ with a capacity of 2.38 wt%within 60 min.Moreover,the composites maintain a capacity retention rate of~99%after 100 cycles at 275℃.Experimental studies and theoretical calculations demonstrate that the in-situ formed VH_(2)/V catalysts,unique 2D structure of H-V_(2)O_(5) nanosheets,and abundant oxygen vacancies positively contribute to the improved hydrogen sorption properties.Notably,the existence of oxygen vacancies plays a double role,which could not only directly accelerate the hydrogen ab/de-sorption rate of MgH_(2),but also indirectly affect the activity of the catalytic phase VH_(2)/V,thereby further boosting the hydrogen storage performance of MgH_(2).This work highlights an oxygen vacancy excited“hydrogen pump”effect of VH_(2)/V on the hydrogen sorption of Mg/MgH_(2).The strategy developed here may pave a new way toward the development of oxygen vacancy-rich transition metal oxides catalyzed hydride systems.
基金supported by grants from the Scientific Research Foundation for the Ph.D.,Guangzhou Medical University(2011C20)National Natural Science Foundation of China(31200120)+1 种基金Medical Scientific Research Foundation of Guangdong Province,China(B2012165)the Guangzhou city-level key disciplines and specialties of Immunology(B127007)
文摘In the present study, we examined the codon usage bias between pseudorabies virus （PRV） US1 gene and the USl-like genes of 20 reference alphaherpesviruses. Comparative analysis showed noticeable disparities of the synonymous codon usage bias in the 21 alphaherpesviruses, indicated by codon adaptation index, effective number of codons （ENc） and GC3s value. The codon usage pattern of PRV US1 gene was phylogenetically conserved and similar to that of the USl-like genes of the genus Varicellovirus of alphaherpesvirus, with a strong bias towards the codons with C and G at the third codon position. Cluster analysis of codon usage pattern of PRV US1 gene with its reference alphaherpesviruses demonstrated that the codon usage bias of USl-like genes of 21 alphaherpesviruses had a very close relation with their gene functions. ENc-plot revealed that the genetic heterogeneity in PRV US1 gene and the 20 reference alphaherpesviruses was constrained by G＋C content, as well as the gene length. In addition, comparison of codon preferences in the US1 gene of PRV with those ofE. coli, yeast and human revealed that there were 50 codons showing distinct usage differences between PRV and yeast, 49 between PRV and human, but 48 between PRV and E. coil Although there were slightly fewer differences in codon usages between E.coli and PRV, the difference is unlikely to be statistically significant, and experimental studies are necessary to establish the most suitable expression system for PRV US1. In conclusion, these results may improve our understanding of the evolution, pathogenesis and functional studies of PRV, as well as contributing to the area of herpesvirus research or even studies with other viruses.
