Cucumber mosaic virus(CMV)threatens lily production by reducing floral quality and enabling carry-over via infected planting stock.To explore tissue-specific host responses,we analyzed a legacy,single-replicate RNA-se...Cucumber mosaic virus(CMV)threatens lily production by reducing floral quality and enabling carry-over via infected planting stock.To explore tissue-specific host responses,we analyzed a legacy,single-replicate RNA-seq dataset from two cultivars,‘Cancun’and‘Connecticut King’(CK),profiling leaf(source)and bulb(sink)tissues at 0 and 28 days post-inoculation(dpi),alongside leaf DAS-ELISA.Principal component analysis indicated that tissue identity dominated the transcriptome(PC1=47.7%),with CMV treatment driving within-tissue shifts over time.Exploratory Gene Ontology/KEGG summaries and a focused marker panel revealed a consistent split:in leaves,genes linked to jasmonate/WRKY-associated defense(e.g.,WRKY40/41/51/53;AOS/OPR1/2;CYP74A/DDE2)tended to show higher expression at 28 dpi,whereas cell-wall/transport-related terms were reduced;in bulbs,transcripts associated with photosynthetic/organellar maintenance(LHCB/CAB,HCF107)andβ-amylase-linked carbohydrate turnover were more prominent,with comparatively limited elevation of canonical defense modules.Leaf ELISA trajectories were compatible with this framework:CK showed a transient peak at 14 dpi followed by a decline at 24 dpi,whereas‘Cancun’increased progressively.Taken together,the concordance among ordination,enrichment patterns,marker behavior,and leaf titers in this non-replicated dataset is consistent with a working model in which stronger or earlier leaf responses may contribute to partial containment and reduced systemic accumulation.We propose a compact leaf marker set(WRKY40/41/51/53;AOS/OPR1/2;CYP74A/DDE2)and bulb candidates(β-amylase;LHCB/CAB/HCF107)as hypothesis-generating indicators of containment and sink maintenance.These tissue-resolved patterns provide a descriptive framework and a starting point for future validation by qPCR and replicated RNA-seq across additional cultivars,with the long-term goal of informing selection and stock hygiene in lily production.展开更多
基金the support of“Cooperative Research Program for Agriculture Science and Technology Development(Project No.PJ00926803)”Rural Development Administration,Republic of Korea.
文摘Cucumber mosaic virus(CMV)threatens lily production by reducing floral quality and enabling carry-over via infected planting stock.To explore tissue-specific host responses,we analyzed a legacy,single-replicate RNA-seq dataset from two cultivars,‘Cancun’and‘Connecticut King’(CK),profiling leaf(source)and bulb(sink)tissues at 0 and 28 days post-inoculation(dpi),alongside leaf DAS-ELISA.Principal component analysis indicated that tissue identity dominated the transcriptome(PC1=47.7%),with CMV treatment driving within-tissue shifts over time.Exploratory Gene Ontology/KEGG summaries and a focused marker panel revealed a consistent split:in leaves,genes linked to jasmonate/WRKY-associated defense(e.g.,WRKY40/41/51/53;AOS/OPR1/2;CYP74A/DDE2)tended to show higher expression at 28 dpi,whereas cell-wall/transport-related terms were reduced;in bulbs,transcripts associated with photosynthetic/organellar maintenance(LHCB/CAB,HCF107)andβ-amylase-linked carbohydrate turnover were more prominent,with comparatively limited elevation of canonical defense modules.Leaf ELISA trajectories were compatible with this framework:CK showed a transient peak at 14 dpi followed by a decline at 24 dpi,whereas‘Cancun’increased progressively.Taken together,the concordance among ordination,enrichment patterns,marker behavior,and leaf titers in this non-replicated dataset is consistent with a working model in which stronger or earlier leaf responses may contribute to partial containment and reduced systemic accumulation.We propose a compact leaf marker set(WRKY40/41/51/53;AOS/OPR1/2;CYP74A/DDE2)and bulb candidates(β-amylase;LHCB/CAB/HCF107)as hypothesis-generating indicators of containment and sink maintenance.These tissue-resolved patterns provide a descriptive framework and a starting point for future validation by qPCR and replicated RNA-seq across additional cultivars,with the long-term goal of informing selection and stock hygiene in lily production.
