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大肠杆菌hfq和rne-710基因的双质粒无痕敲除技术 被引量:1
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作者 王净 吕瑞辰 +1 位作者 韩延平 杨瑞馥 《生物工程学报》 CAS CSCD 北大核心 2018年第4期602-612,共11页
基因敲除技术是了解基因功能的重要技术手段。以大肠杆菌K-12 MG1655基因组hfq(309 bp)和rne-710(1056 bp)基因为模型,首先构建Δhfq∷Spe和Δrne-710∷Spe菌株,通过融合PCR方法分别构建缺失hfq(309 bp)和rne-710(1056 bp)的融合片段并... 基因敲除技术是了解基因功能的重要技术手段。以大肠杆菌K-12 MG1655基因组hfq(309 bp)和rne-710(1056 bp)基因为模型,首先构建Δhfq∷Spe和Δrne-710∷Spe菌株,通过融合PCR方法分别构建缺失hfq(309 bp)和rne-710(1056 bp)的融合片段并连接至辅助质粒,缺失hfq和rne-710的片段经重组分别替换壮观霉素抗性盒,得到无痕敲除株Δhfq和Δrne-710。双质粒无痕敲除和融合PCR方法相结合为大片段基因缺失开辟了新的途径。 展开更多
关键词 大肠杆菌 HFQ rne-710 双质粒无痕敲除 融合PCR Ⅰ-Sce Ⅰ内切酶
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Transcriptomic Response to Yersinia pestis:RIG-I Like Receptor Signaling Response Is Detrimental to the Host against Plague 被引量:2
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作者 Zongmin Du Huiying Yang +12 位作者 Yafang Tan Guang Tian Qingwen Zhang Yujun Cui Yanfeng Yan Xiaohong Wu Zuyun Chen Shiyang Cao Yujing Bi yanping han Xiaoyi Wang Yajun Song Ruifu Yan 《Journal of Genetics and Genomics》 SCIE CAS CSCD 2014年第7期379-396,共18页
Bacterial pathogens have evolved various mechanisms to modulate host immune responses for successful infection. In this study, RNA- sequencing technology was used to analyze the responses of human monocytes THP1 to Ye... Bacterial pathogens have evolved various mechanisms to modulate host immune responses for successful infection. In this study, RNA- sequencing technology was used to analyze the responses of human monocytes THP1 to Yersinia pestis infection. Over 6000 genes were differentially expressed over the 12 h infection. Kinetic responses of pathogen recognition receptor signaling pathways, apoptosis, antigen processing, and presentation pathway and coagulation system were analyzed in detail. Among them, RIG-I-like receptor (RLR) signaling pathway, which was established for antiviral defense, was significantly affected. Mice lacking MAVS, the adaptor of the RLR signaling pathway, were less sensitive to infection and exhibited lower IFN-13 production, higher Thl-type cytokines IFN-γ and IL-12 production, and lower Th2-type cytokines IL-4 and IL-13 production in the serum compared with wild-type mice. Moreover, infection of pathogenic bacteria other than E pestis also altered the expression of the RLR pathway, suggesting that the response of RLR pathway to bacterial infection is a universal mechanism. 展开更多
关键词 Yersinia pestis Innate immunity RIG-I-like receptor signaling RNA-seq Transcriptomic response
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Microbiota, chronic inflammation, and health: The promise of inflammatome and inflammatomics for precision medicine and health care
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作者 Huan Zhang Bing Jun Yang Lee +10 位作者 Tong Wang Xuesong Xiang Yafang Tan yanping han Yujing Bi Fachao Zhi Xin Wang Fang He Seppo J.Salminen Baoli Zhu Ruifu Yang 《hLife》 2025年第7期308-326,307,共20页
Theterms“inflammatome”(holistic inflammation networks)and“inflammatomics”(anovelomicsfield)wereproposed to decode dysbiosis-driven chronic inflammation and its disease links.Inflammatomics explores microbiota–imm... Theterms“inflammatome”(holistic inflammation networks)and“inflammatomics”(anovelomicsfield)wereproposed to decode dysbiosis-driven chronic inflammation and its disease links.Inflammatomics explores microbiota–immune crosstalk,particularly innate immune interactions,revealing how dysregulated microbial communities trigger chronic inflammation underlying disorders like inflammatory bowel disease,metabolic diseases,and neurodegeneration.This discipline transcends traditional inflammation paradigms by dissecting molecular pathways connecting dysbiosis to systemic inflammation,enabling early detection and precision interventions.It integrates evolutionary perspectives on host–microbe interactions,emphasizing the human body as a stress-sensitive“organ”.Challenges include stan dardizing inflammatome profiling,translating findings into clinical tools,and advancing multiomics technologies.By bridging microbial ecology,immunology,and systems medicine,inflammatomics holds a transformative potential to shift health care from reactive treatment to proactive,personalized prevention,targeting disease origins shaped by chronic inflammatome dysregulation. 展开更多
关键词 inflammatome inflammatomics DYSBIOSIS chronic inflammation healthcare MEDICINE
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On the viscosity of magnetic fluid with low and moderate solid fraction 被引量:5
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作者 Zhiqiang Ren yanping han +2 位作者 Ruoyu Hong Jianmin Ding Hongzhong Li 《Particuology》 SCIE EI CAS CSCD 2008年第3期191-198,共8页
The design of a pressurized capillary rheometer operating at prescribed temperature is described to measure the viscosity of magnetic fluids (MFs) containing Fe3O4 magnetic nanoparticles (MNPs). The equipment cons... The design of a pressurized capillary rheometer operating at prescribed temperature is described to measure the viscosity of magnetic fluids (MFs) containing Fe3O4 magnetic nanoparticles (MNPs). The equipment constant of the rheometer was obtained using liquids with predetermined viscosities. Experimentally measured viscosities were used to evaluate different equations for suspension viscosities. Deviation of measured suspension viscosities from the Einstein equation was found to be basically due to the influence of spatial distribution and aggregation of Fe3O4 MNPs. By taking account of the coating layer on MNPs and the aggregation of MNPs in MFs, a modified Einstein equation was proposed to fit the experimental data. Moreover, the influence of external magnetic field on viscosity was also taken into account. Viscosities thus predicted are in good agreement with experimental data. Temperature effect on suspension viscosity was shown experimentally to be due to the shear-thinning behavior of the MFs. 展开更多
关键词 RHEOLOGY Capillary rheometer Magnetic fluid VISCOSITY Peclet number
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IL-17A-dependent gut microbiota is essential for regulating diet-induced disorders in mice 被引量:7
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作者 Yujing Bi Chunxiao Li +16 位作者 Lin Liu Jiyuan Zhou Zhengchao Li Huimin Deng Chunyan Wu yanping han Yajun Song Yafang Tan Xiaoyi Wang Zongmin Du Yujun Cui Yanfeng Yan Fachao Zhi Guangwei Liu Nan Qin Heping Zhang Ruifu Yang 《Science Bulletin》 SCIE EI CAS CSCD 2017年第15期1052-1063,共12页
The gut microbiota plays a key role in obesity and related metabolic disorders, and multiple factors including diet, host genotype, and age regulate it. Many studies have examined the contribution of extrinsic factors... The gut microbiota plays a key role in obesity and related metabolic disorders, and multiple factors including diet, host genotype, and age regulate it. Many studies have examined the contribution of extrinsic factors to the regulation of the gut microbiota, but the importance of the host genetic constitution cannot be ignored, lnterleukin 17A (lL-17A), a pro-inflammatory cytokine, is important in the defense against infection and diseases. Here, we investigated the association among IL-17, a high-fat diet (HFD), and the gut microbiota. Mice deficient in 1L-17A were resistant to diet-induced obesity and related diseases. Compared with the I1-17a^-/1 mice, wild-type (WT) mice challenged with HFD showed obvious weight fluctuations, such as those seen in type 2 diabetes, and hematological changes similar to those associated with metabolic syndrome. However, housing WT mice and Il-17a^-/- mice together signifi- cantly alleviated these symptoms in the WT mice. A metagenomic analysis of the mouse feces indicated that the microbial community compositions of these two groups differed before HFD feeding. The HFD mediated shifts in the gut microbial compositions, which were associated with the mouse phenotypes. We also identified potentially beneficial and harmful species present during this period, and drew net- works of the most abundant species. A functional analysis indicated pathway changes in the WT and I1-17a^- /- mice when fed the HFD. Collectively, these data underscore the importance of the host factor IL-17A in shaping and regulating the gut microbiota, which conversely, influences the host health. 展开更多
关键词 Gut microbiota Obesity IL-17A Metagenomics
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Transcriptional regulation of the waaAE-coaD operon by PhoP and RcsAB in Yersinia pestis biovar Microtus 被引量:2
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作者 Lei Liu Nan Fang +5 位作者 Yicheng Sun Huiying Yang Yiquan Zhang yanping han Dongsheng Zhou Ruifu Yang 《Protein & Cell》 SCIE CAS CSCD 2014年第12期940-944,共5页
Dear Editor, Yersinia pestis, the causative agent of plague, is transmitted among mammals (including humans) primarily via the bite of infected fleas. Flea-borne transmission distinguishes Y. pestis from its progeni... Dear Editor, Yersinia pestis, the causative agent of plague, is transmitted among mammals (including humans) primarily via the bite of infected fleas. Flea-borne transmission distinguishes Y. pestis from its progenitor Y. pseudotuberculosis, which is a mild food-borne pathogen (Zhou and Yang, 2011). In Y. pestis, transmission by fleas involves the synthesis of biofilms that physically block the flea's proventriculus; Y. pseudotuberculosis does not produce biofilms in fleas (Zhou and Yang, 2011). Thus, biofllm formation may play a key role in virulence differences between the species. 展开更多
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