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定向进化改造酪氨酸解氨酶提高大肠杆菌合成对香豆酸产量 被引量:7
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作者 霍亚楠 吴凤礼 +4 位作者 宋国田 涂然 陈五九 花尔并 王钦宏 《生物工程学报》 CAS CSCD 北大核心 2020年第11期2367-2376,共10页
对香豆酸是一种具有多种药理活性的天然酚类化合物,也是多种天然药用产物生物合成的前体物质,广泛应用于食品、化妆品、医药等领域。通过微生物合成对香豆酸相对于化学合成和植物提取工艺具有节能减排等优势。但是,目前微生物合成对香... 对香豆酸是一种具有多种药理活性的天然酚类化合物,也是多种天然药用产物生物合成的前体物质,广泛应用于食品、化妆品、医药等领域。通过微生物合成对香豆酸相对于化学合成和植物提取工艺具有节能减排等优势。但是,目前微生物合成对香豆酸产量较低,难以满足大规模工业发酵生产的要求。为了进一步提高对香豆酸产量,对粘红酵母酪氨酸解氨酶(Tyrosine ammonia-lyase,TAL)进行定向进化改造,利用高通量筛选方法从随机突变体文库中筛选TAL催化活性提高的突变体。通过初筛和复筛两轮筛选,从大约10000个突变体中获得1个TAL催化活性提高1倍的突变体。该突变体包含3个氨基酸突变位点,分别为S9Y、A11N、E518A。进一步通过单点氨基酸饱和突变验证,当S9位点突变为Y、I、N和A11位点突变为N、T、Y时,TAL的催化活性提高1倍以上。通过对S9和A11位点3种类型突变进行组合突变验证,S9Y/A11N和S9N/A11Y突变体的TAL催化活力显著高于其他组合。将S9N/A11Y突变体质粒转入酪氨酸高产菌株CP032。通过摇瓶发酵,该菌株在48 h时的对香豆酸产量达到394.2 mg/L,比对照菌提高2.2倍。本研究工作对促进微生物合成对香豆酸的代谢工程研究具有一定的参考价值。 展开更多
关键词 大肠杆菌 对香豆酸 生物合成 定向进化 酪氨酸解氨酶
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新型生长快速需钠弧菌基因组无痕编辑体系构建 被引量:2
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作者 吴凤礼 梁艳霞 +2 位作者 张媛媛 霍亚楠 王钦宏 《生物工程学报》 CAS CSCD 北大核心 2020年第11期2387-2397,共11页
需钠弧菌Vibrio natriegens作为近几年发展起来的一种新型生长快速底盘细胞,在合成生物学领域展现出良好的应用前景。基因组编辑是合成生物学研究中不可或缺的遗传操作手段。但是,开展需钠弧菌的合成生物学研究仍然有待进一步发展精准... 需钠弧菌Vibrio natriegens作为近几年发展起来的一种新型生长快速底盘细胞,在合成生物学领域展现出良好的应用前景。基因组编辑是合成生物学研究中不可或缺的遗传操作手段。但是,开展需钠弧菌的合成生物学研究仍然有待进一步发展精准、高效的基因组编辑系统。针对这个问题,首先对6株需钠弧菌的生理表型进行检测,选取生长快速、表型稳定的CICC 10908菌株作为基因组编辑研究的宿主细胞。其次,建立并优化需钠弧菌自然转化系统。优化后的系统将筛选标记基因cat-sacB或KanR整合到需钠弧菌染色体上的同源重组效率分别达到4×10^–5和4×10^–4。再次,在优化的自然转化系统基础上,利用双向选择性筛选方法,建立了精准、高效的需钠弧菌基因组无痕编辑体系。通过测试,基因敲除、回补、插入和替换这4种不同类型基因编辑的阳性率分别为93.8%、100%、95.7%和100%。最后,需钠弧菌可以实现质粒的高效转化和消除。该工作为需钠弧菌合成生物学研究提供精准、高效的基因组无痕编辑手段。 展开更多
关键词 需钠弧菌 底盘细胞 自然转化 基因组编辑 合成生物学
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Gallstones,cholecystectomy,and cancer risk:an observational and Mendelian randomization study 被引量:1
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作者 Yuanyue Zhu Linhui Shen +37 位作者 yanan huo Qin Wan Yingfen Qin Ruying Hu Lixin Shi Qing Su Xuefeng Yu Li Yan Guijun Qin Xulei Tang Gang Chen Yu Xu Tiange Wang Zhiyun Zhao Zhengnan Gao Guixia Wang Feixia Shen Xuejiang Gu Zuojie Luo Li Chen Qiang Li Zhen Ye Yinfei Zhang Chao Liu Youmin Wang Shengli Wu Tao Yang Huacong Deng Lulu Chen Tianshu Zeng Jiajun Zhao Yiming Mu Weiqing Wang Guang Ning Jieli Lu Min Xu Yufang Bi Weiguo Hu 《Frontiers of Medicine》 2025年第1期79-89,共11页
This study aimed to comprehensively examine the association of gallstones,cholecystectomy,and cancer risk.Multivariable logistic regressions were performed to estimate the observational associations of gallstones and ... This study aimed to comprehensively examine the association of gallstones,cholecystectomy,and cancer risk.Multivariable logistic regressions were performed to estimate the observational associations of gallstones and cholecystectomy with cancer risk,using data from a nationwide cohort involving 239799 participants.General and gender-specific two-sample Mendelian randomization(MR)analysis was further conducted to assess the causalities of the observed associations.Observationally,a history of gallstones without cholecystectomy was associated with a high risk of stomach cancer(adjusted odds ratio(aOR)=2.54,95%confidence interval(CI)1.50–4.28),liver and bile duct cancer(aOR=2.46,95%CI 1.17–5.16),kidney cancer(aOR=2.04,95%CI 1.05–3.94),and bladder cancer(aOR=2.23,95%CI 1.01–5.13)in the general population,as well as cervical cancer(aOR=1.69,95%CI 1.12–2.56)in women.Moreover,cholecystectomy was associated with high odds of stomach cancer(aOR=2.41,95%CI 1.29–4.49),colorectal cancer(aOR=1.83,95%CI 1.18–2.85),and cancer of liver and bile duct(aOR=2.58,95%CI 1.11–6.02).MR analysis only supported the causal effect of gallstones on stomach,liver and bile duct,kidney,and bladder cancer.This study added evidence to the causal effect of gallstones on stomach,liver and bile duct,kidney,and bladder cancer,highlighting the importance of cancer screening in individuals with gallstones. 展开更多
关键词 GALLSTONE CHOLECYSTECTOMY cancer risk Mendelian randomization
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Circulating short-chain and branched short-chain fatty acids and the risk of incident type 2 diabetes: findings from the 4C study
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作者 Shuangyuan Wang Hong Lin +55 位作者 Xiaojing Jia Yiting Lin Chunyan Hu Mian Li Yu Xu Min Xu Jie Zheng Xinjie Zhao Yanli Li Lulu Chen Tianshu Zeng Ruying Hu Zhen Ye Lixin Shi Qing Su Yuhong Chen Xuefeng Yu Li Yan Tiange Wang Zhiyun Zhao Guijun Qin Qin Wan Gang Chen Meng Dai Di Zhang Bihan Qiu Xiaoyan Zhu Ruixin Liu Xiao Wang Xulei Tang Zhengnan Gao Feixia Shen Xuejiang Gu Zuojie Luo Yingfen Qin Li Chen Xinguo Hou yanan huo Qiang Li Guixia Wang Yinfei Zhang Chao Liu Youmin Wang Shengli Wu Tao Yang Huacong Deng Jiajun Zhao Yiming Mu Guowang Xu Shenghan Lai Donghui Li Guang Ning Weiqing Wang Yufang Bi Jieli Lu the 4C Study Group 《Life Metabolism》 2025年第2期59-68,共10页
Previous studies suggested that fecal short-chain fatty acids(SCFAs) and branched short-chain fatty acids(BCFAs) are associated with glucose regulation. However, the potential relationship between circulating SCFAs an... Previous studies suggested that fecal short-chain fatty acids(SCFAs) and branched short-chain fatty acids(BCFAs) are associated with glucose regulation. However, the potential relationship between circulating SCFAs and BCFAs with incident diabetes risk in both men and women remains unidentified in prospective cohort studies. In this study, we examined a panel of nine serum SCFAs and BCFAs in 3414 subjects with incident diabetes, and matched normoglycemic controls from the China Cardiometabolic Disease and Cancer Cohort study. In fully adjusted conditional logistic regression models, total SCFAs, total BCFAs, and isovaleric acid were significantly associated with incident type 2 diabetes mellitus(T2DM)(P < 0.05). Interestingly, gender-specific analysis showed that per standard deviation(SD) increment of SCFAs were positively associated with incident T2DM among women, with the odds ratio(95% confidence interval) of 1.16(1.05-1.29) for total SCFAs and 1.18(1.07-1.31) for propionate, respectively(P < 0.05, false discovery rate(FDR) < 0.05). No significant associations were observed in men. A significant interaction was detected between men and women for propionate(Pinteraction< 0.001, FDR < 0.01). After further adjustment of insulin measurements, the associations of serum propionate with diabetes remained significant(P < 0.05, FDR < 0.05). Meanwhile, the associations of total BCFAs and isovaleric acid with diabetes were partially mediated by triglycerides, insulin resistance, and β-cell function in mediation analysis. These findings, for the first time in a large prospective cohort, provide evidence for an association between circulating SCFAs and BCFAs with T2DM risk, and support the potential role of circulating propionate with gender disparities in the early pathogenesis of diabetes. 展开更多
关键词 short-chain fatty acids branched short-chain fatty acids type 2 diabetes insulin resistance
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Associations of sleeping patterns and isotemporal substitution of other behavior with the prevalence of CKD in Chinese adults 被引量:2
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作者 Yi Ding Xiaoli Xu +41 位作者 Zhuojun Xin Qiuyu Cao Jiaojiao Huang Xianglin Wu yanan huo Qin Wan Yingfen Qin Ruying Hu Lixin Shi Qing Su Xuefeng Yu Li Yan Guijun Qin Xulei Tang Gang Chen Min Xu Tiange Wang Zhiyun Zhao Zhengnan Gao Guixia Wang Feixia Shen Zuojie Luo Li Chen Qiang Li Zhen Ye Yinfei Zhang Chao Liu Youmin Wang Tao Yang Huacong Deng Lulu Chen Tianshu Zeng Jiajun Zhao Yiming Mu Shengli Wu Yuhong Chen Jieli Lu Weiqing Wang Guang Ning Yu Xu Yufang Bi Mian Li 《Frontiers of Medicine》 SCIE CSCD 2024年第2期303-314,共12页
Studies have found a U-shaped relationship between sleep duration and chronic kidney disease(CKD)risk,but limited research evaluated the association of reallocating excessive sleep to other behavior with CKD.We includ... Studies have found a U-shaped relationship between sleep duration and chronic kidney disease(CKD)risk,but limited research evaluated the association of reallocating excessive sleep to other behavior with CKD.We included 104538 participants from the nationwide cohort of the Risk Evaluation of Cancers in Chinese Diabetic Individuals:A Longitudinal Study,with self-reported time of daily-life behavior.Using isotemporal substitution models,we found that substituting 1 h of sleeping with sitting,walking,or moderate-to-vigorous physical activity was associated with a lower CKD prevalence.Leisure-time physical activity displacement was associated with a greater prevalence reduction than occupational physical activity in working population.In stratified analysis,a lower CKD prevalence related to substitution toward physical activity was found in long sleepers.More pronounced correlations were observed in long sleepers with diabetes than in those with prediabetes,and they benefited from other behavior substitutions toward a more active way.The U-shaped association between sleep duration and CKD prevalence implied the potential effects of insufficient and excessive sleep on the kidneys,in which the pernicious link with oversleep could be reversed by time reallocation to physical activity.The divergence in the predicted effect on CKD following time reallocation to behavior of different domains and intensities and in subpopulations with diverse metabolic statuses underlined the importance of optimizing sleeping patterns and adjusting integral behavioral composition. 展开更多
关键词 SLEEP physical activity chronic kidney disease isotemporal substitution behavioral pattern
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Exploring age and gender disparities in cardiometabolic phenotypes and lipidomic signatures among Chinese adults: a nationwide cohort study 被引量:1
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作者 Xiaojing Jia Hong Lin +52 位作者 Ruizhi Zheng Shuangyuan Wang Yilan Ding Chunyan Hu Mian Li Yu Xu Min Xu Guixia Wang Lulu Chen Tianshu Zeng Ruying Hu Zhen Ye Lixin Shi Qing Su Yuhong Chen Xuefeng Yu Li Yan Tiange Wang Zhiyun Zhao Guijun Qin Qin Wan Gang Chen Meng Dai Di Zhang Bihan Qiu Xiaoyan Zhu Jie Zheng Xulei Tang Zhengnan Gao Feixia Shen Xuejiang Gu Zuojie Luo Yingfen Qin Li Chen Xinguo Hou yanan huo Qiang Li Yinfei Zhang Chao Liu Youmin Wang Shengli Wu Tao Yang Huacong Deng Jiajun Zhao Yiming Mu Shenghan Lai Donghui Li Weiguo Hu Guang Ning Weiqing Wang Yufang Bi Jieli Lu for theC Study Group 《Life Metabolism》 2024年第5期61-74,共14页
Understanding sex disparities in modifiable risk factors across the lifespan is essential for crafting individualized intervention strategies.We aim to investigate age-related sex disparity in cardiometabolic phenotyp... Understanding sex disparities in modifiable risk factors across the lifespan is essential for crafting individualized intervention strategies.We aim to investigate age-related sex disparity in cardiometabolic phenotypes in a large nationwide Chinese cohort.A total of 254,670 adults aged 40 years or older were selected from a population-based cohort in China.Substantial sex disparities in the prevalence of metabolic diseases were observed across different age strata,particularly for dyslipidemia and its components.Generalized additive models were employed to characterize phenotype features,elucidating how gender differences evolve with advancing age.Half of the 16 phenotypes consistently exhibited no sex differences,while four(high-density lipoprotein[HDL]cholesterol,apolipoprotein A1,diastolic blood pressure,and fasting insulin)displayed significant sex differences across all age groups.Triglycerides,apolipoprotein B,non-HDL cholesterol,and total cholesterol demonstrated significant age-dependent sex disparities.Notably,premenopausal females exhibited significant age-related differences in lipid levels around the age of 40-50 years,contrasting with the relatively stable associations observed in males and postmenopausal females.Menopause played an important but not sole role in age-related sex differences in blood lipids.Sleep duration also had an age-and sex-dependent impact on lipids.Lipidomic analysis and K-means clustering further revealed that 58.6%of the 263 measured lipids varied with sex and age,with sphingomyelins,cholesteryl esters,and triacylglycerols being the most profoundly influenced lipid species by the combined effects of age,sex,and their interaction.These findings underscore the importance of age consideration when addressing gender disparities in metabolic diseases and advocate for personalized,age-specific prevention and management. 展开更多
关键词 sex difference AGING metabolic diseases modifiable risk factors LIPIDOMICS
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Lipid nanoparticle-mediated base-editing of the Hao1 gene achieves sustainable primary hyperoxaluria type 1 therapy in rats
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作者 Dexin Zhang Rui Zheng +10 位作者 Zhoutong Chen Liren Wang Xi Chen Lei Yang yanan huo Shuming Yin Dan Zhang Jiaxin Huang Xingang Cui Dali Li Hongquan Geng 《Science China(Life Sciences)》 CSCD 2024年第12期2575-2586,共12页
Primary hyperoxaluria type 1(PH1)is a severe hereditary disease,leading to the accumulation of oxalate in multiple organs,particularly the kidney.Hydroxyacid oxidase 1(HAO1),a pivotal gene involved in oxalate producti... Primary hyperoxaluria type 1(PH1)is a severe hereditary disease,leading to the accumulation of oxalate in multiple organs,particularly the kidney.Hydroxyacid oxidase 1(HAO1),a pivotal gene involved in oxalate production,is an approved target for the treatment of PH1.In this study,we demonstrated the discovery of several novel therapeutic sites of the Hao1 gene and the efficient editing of Hao1c.290-2 A in vivo with lipid nanoparticles(LNP)delivered adenine base editing(ABE)mRNA.A single infusion of LNP-ABE resulted in a near-complete knockout of Hao1 in the liver,leading to the sustainable normalization of urinary oxalate(for at least 6 months)and complete rescue of the pathophysiology in PH1 rats.Additionally,a significant correlation between Hao1 editing efficiency and urinary oxalate levels was observed and over 60%Hao1 editing efficiency was required to achieve the normalization of urinary oxalate in PH1 rats.These findings suggest that the LNP-mediated base-editing of Hao1c.290-2 A is an efficient and safe approach to PH1 therapy,highlighting its potential utility in clinical settings. 展开更多
关键词 primary hyperoxaluria type 1 lipid nanoparticles hydroxyacid oxidase 1 base editing
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Therapeutic effectiveness of different machines in intense pulsed light treatment of meibomian gland dysfunction
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作者 Zhenwei Qin Yirui Zhu +8 位作者 Jiale Lu Lin Lin yanan huo Haoyu Wang Chen Qiao Xiangxi Chen Jianhua Wu Qingyan Zeng Xiuming Jin 《Advances in Ophthalmology Practice and Research》 2024年第4期182-188,共7页
Purpose:This study aimed to determine the therapeutic effectiveness of different machines in intense pulsed light(IPL)treatment of meibomian gland dysfunction(MGD).Methods:213 subjects diagnosed with MGD underwent thr... Purpose:This study aimed to determine the therapeutic effectiveness of different machines in intense pulsed light(IPL)treatment of meibomian gland dysfunction(MGD).Methods:213 subjects diagnosed with MGD underwent three sessions of IPL treatment in a control(M22)treatment group or experimental(OPL-I)treatment group and were followed up three to four weeks after each session.Tear breakup time(TBUT),meibomian gland secretion scores(MGSS),meibomian gland meibum scores(MGMS),corneal fluorescein staining(CFS)scores,and the Standard Patient Evaluation of Eye Dryness(SPEED)was used to assess eye dryness signs and symptoms at baseline and follow-up visits.Results:Two machines had the same working principles except that experimental(OPL-I)group consist of a dual filter system.Both groups showed significant improvements(P<0.0001)in TBUT,MGSS,MGMS,CFS scores and SPEED scores.Non-inferiority analysis showed no statistically significant differences in any result between the two groups.Various defects appeared on the filter with the extension of usage time.Spectrophotometry showed that light intensity decreased to 93.5%±0.46%past the first filter.Conclusions:IPL treatment completed with different machines have the same effect on improving the symptoms and signs of MGD.The dual filter system in the IPL machine reduces light intensity by approximately 6.5%without affecting its therapeutic effect.It is a feasible measure to ensure double safety and has the significance of popularization not only for MGD but also in other IPL treatment scenarios. 展开更多
关键词 MGD IPL Non-inferiority analysis Dual filter system
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