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Organic matter accelerated microbial iron reduction and available phosphorus release in reflooded paddy soils
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作者 xipeng liu Yuchen Shu +5 位作者 Kejie Li Haotian Wang Qingfang Bi Haibo Wang Chengliang Sun Xianyong Lin 《Soil Ecology Letters》 2025年第3期155-168,共14页
Organic fertilization may influence soil carbon−iron(C-Fe)cycling and enhance phosphorus(P)availability,yet the direct connection between soil organic matter molecules and iron-reducing processes in long-term fertiliz... Organic fertilization may influence soil carbon−iron(C-Fe)cycling and enhance phosphorus(P)availability,yet the direct connection between soil organic matter molecules and iron-reducing processes in long-term fertilized paddy soils remains underexplored.In this study,we conducted a microcosm experiment using paddy soils treated with six distinct fertilization regimes involving varying P and organic matter inputs up to five years.We assessed P activation under reflooding conditions,evaluated Fe reduction,and characterized dissolved organic matter(DOM)at the molecular level using Fourier transform ion cyclotron resonance mass spectrometry(FT-ICR MS),alongside profiling soil microbial community composition via high-throughput sequencing.Our findings revealed that after 25 days of reflooding,soil Olsen-P content increased by an average of 73%compared to its initial state,showing a strong correlation with the Fe reduction process.Specifically,treatments involving pig manure application exhibited higher Fe reduction rates and enhanced P activation,highlighting the role of organic matter in facilitating Fe reduction.Examination of Fe-reducing microorganisms revealed that their relative abundance was decoupled from Fe reduction and P release rates,potentially due to limitations of lower soil organic matter content.Further analysis of DOM composition and network structures suggested that high-molecular-weight DOM,particularly lignin,acted as key resources for Fe-reducing microbes,thereby driving Fe reduction and promoting P release.Overall,our study highlights the crucial role of soil DOM in enabling microbial-driven Fe reduction and enhancing P availability,providing insights valuable for sustainable agricultural practices. 展开更多
关键词 manure application P availability soil biogeochemistry microbial carbon mineralization iron-carbon cycling anaerobic soil
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Low-probability events detection using unsupervised multiprototype clustering for single-molecule electronics
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作者 Chi Shang Rigong Te +9 位作者 Shenglun Xiong xipeng liu Taige Lu Yixuan Zhu Chun Tang Jing Li Yu Zhou Haojie liu Junyang liu Wenjing Hong 《Nano Research》 2025年第4期402-410,共9页
Artificial intelligence for science(AI4S)has emerged as a new horizon in state-of-the-art scientific research,and single-molecule electronics could be considered an ideal prototype in AI4S due to the opportunities in ... Artificial intelligence for science(AI4S)has emerged as a new horizon in state-of-the-art scientific research,and single-molecule electronics could be considered an ideal prototype in AI4S due to the opportunities in correlating highthroughput and high-quality data with clear physical mechanisms.Towards using artificial intelligence for single-molecule electronics(AI4SME),the unsupervised extraction of lowprobability events from the massive experimental data becomes the key step,which has emerged for accurate detection of different configurations and even structural changes in singlemolecule junctions.However,the present algorithms suffer from the“uniform effect”,in which the majority events are erroneously allocated to minority ones,resulting in a relatively equal spread of cluster sizes and hindering the investigations for charge transport mechanisms with subtle and complex behaviors in single-molecule electronics.In this work,we propose a new multi-prototype clustering technique for precisely discriminating molecular events during the break junction process,especially those occurring with a probability below 10%,and further precisely extract the product species at the onset of the electric field-driven single-molecule keto-enol reaction with a probability as low as 1.5%.Our work tackles the long-term bottleneck of uniform effect for the precise detection of low-probability single-molecule events. 展开更多
关键词 single-molecule electronics low-probability events detection machine learning artificial intelligence for science(AI4S)
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嗜热古菌Sulfolobus acidocaldarius核酸内切酶V的重组表达与酶学特征
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作者 宋吴涛 刘喜朋 缪晓玲 《微生物学报》 CAS CSCD 北大核心 2021年第12期4070-4085,共16页
【目的】表达纯化嗜酸嗜热硫化叶菌(Sulfolobus acidocaldarius)的核酸内切酶V(Saci_0544),对其核酸内切酶活性及酶学特征进行探究。【方法】将Sulfolobus acidocaldarius核酸内切酶V(SacEndoV)在大肠杆菌中进行重组表达,经亲和层析纯... 【目的】表达纯化嗜酸嗜热硫化叶菌(Sulfolobus acidocaldarius)的核酸内切酶V(Saci_0544),对其核酸内切酶活性及酶学特征进行探究。【方法】将Sulfolobus acidocaldarius核酸内切酶V(SacEndoV)在大肠杆菌中进行重组表达,经亲和层析纯化得到目标蛋白;利用带有不同类型损伤的寡核苷酸作为底物,结合变性聚丙烯酰胺凝胶电泳技术,鉴定SacEndoV对相应损伤寡核苷酸底物的剪切活性。【结果】SacEndoV特异性剪切含脱氧肌苷(Deoxyinosine)的损伤DNA底物,明显偏好单链DNA底物。SacEndoV在70–95℃温度范围内酶活性高,酶活性依赖于二价金属离子,Mg^(2+)为最佳辅助离子,其最佳反应pH为7.5–8.0,高于200 mmol/L的NaCl会明显抑制其剪切活性。损伤DNA中脱氧肌苷3′端相邻的脱氧核糖核苷酸的结构完整性对于SacEndoV识别并剪切相应底物具有重要影响,脱氧肌苷3′端无碱基位点的存在使得SacEndoV不能够切断损伤DNA。此外,经测定SacEndoV对于含肌苷的损伤RNA底物具有剪切活性。【结论】本研究证实SacEndoV是一种典型的核酸内切酶V,对含脱氧肌苷的损伤DNA具有特异性的内切酶活性,推测其在Sulfolobus acidocaldarius体内参与脱氧肌苷的切除修复。 展开更多
关键词 嗜热古菌 嗜酸嗜热硫化叶菌 核酸内切酶V 脱氧肌苷
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