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蓝碧海峡澄黄滨珊瑚群体遗传多样性 被引量:2
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作者 牛文涛 田鹏 +4 位作者 林荣澄 陈彬 suharsono 施晓峰 郑新庆 《应用海洋学学报》 CAS CSCD 北大核心 2015年第3期419-426,共8页
通过对印度尼西亚蓝碧海峡3个澄黄滨珊瑚(Porites lutea)地理群体(YM、YN、YS)的79个样本核糖体RNA转录单元内间隔区ITS基因(包括ITS1区和ITS2区)片段进行克隆、测序,探讨澄黄滨珊瑚的群体遗传多样性和遗传分化.结果表明:79条序列共获... 通过对印度尼西亚蓝碧海峡3个澄黄滨珊瑚(Porites lutea)地理群体(YM、YN、YS)的79个样本核糖体RNA转录单元内间隔区ITS基因(包括ITS1区和ITS2区)片段进行克隆、测序,探讨澄黄滨珊瑚的群体遗传多样性和遗传分化.结果表明:79条序列共获得63个单倍型,3个群体呈现出高的单倍型多样性(Hd=0.991 56)和高的核苷酸多样性(Pi=0.026 81).Tajima'D检验、Fu's Fs检验和岐点分布检验(mismatch analysis)推测种群经历了群体扩张事件.单倍型邻接关系树和单倍型网络图表明澄黄滨珊瑚群体没有明显的地理谱系结构.分子方差分析(AMOVA)表明群体间遗传变异占1.22%,群体内遗传变异占98.78%.群体间固定指数(Fst)的绝对值为0.012 2,表明群体间遗传分化较弱.各群体间的基因流值均大于4,说明澄黄滨珊瑚在当地群体间随机交配,基因交流十分充沛,各珊瑚群体间没有地理隔离,可以互相作为造礁珊瑚修复用的来源补充地. 展开更多
关键词 海洋生物学 澄黄滨珊瑚 遗传多样性 基因流 转录间隔区 蓝碧海峡
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2种分子标记应用于澄黄滨珊瑚群体遗传多样性研究中的可行性 被引量:3
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作者 田鹏 牛文涛 +2 位作者 林荣澄 陈彬 suharsono 《应用海洋学学报》 CAS CSCD 2014年第1期46-52,共7页
利用PCR技术对澄黄滨珊瑚的2种分子标记(线粒体细胞色素氧化酶亚基1基因COI和核糖体RNA内转录间隔区基因ITS)进行测序,探讨COI序列和ITS序列在澄黄滨珊瑚(Porites lutea)群体研究中的适用性,并从中选出最适合研究澄黄滨珊瑚群体遗传多... 利用PCR技术对澄黄滨珊瑚的2种分子标记(线粒体细胞色素氧化酶亚基1基因COI和核糖体RNA内转录间隔区基因ITS)进行测序,探讨COI序列和ITS序列在澄黄滨珊瑚(Porites lutea)群体研究中的适用性,并从中选出最适合研究澄黄滨珊瑚群体遗传多样性的分子标记.结果显示COI序列变异位点少,成对序列差异在群体内、群体间都很小,不适于澄黄滨珊瑚的群体研究;而ITS区序列个体内成对的序列差异仅为0.35%,可以作为研究澄黄滨珊瑚群体遗传多样性的分子标记;通过对ITS1、ITS2、5.8S rRNA、ITS1+ITS2及ITS区序列的比较,认为ITS1+ITS2序列是最适合研究澄黄滨珊瑚群体遗传多样性的分子标记.本研究为以后研究我国沿岸造礁石珊瑚澄黄滨珊瑚的群体遗传结构提供方法依据,从而为保护管理和恢复受损珊瑚礁生态系统提供遗传学数据支持. 展开更多
关键词 保护生物学 澄黄滨珊瑚 群体遗传 分子标记 COI ITS1+ITS2
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Next-generation sequencing revealed specific microbial symbionts in Porites lutea with pigment abnormalities in North Sulawesi, Indonesia
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作者 OU Danyun CHEN Bin +3 位作者 HADI Tri Aryono suharsono NIU Wentao ALFIANSAH Yustian Rovi 《Acta Oceanologica Sinica》 SCIE CAS CSCD 2018年第12期78-84,共7页
Bacterial diseases affecting corals pose an enormous threat to the health of coral reefs. The relationship between certain bacterial species and coral diseases remain largely unknown. Pigment abnormalities are common ... Bacterial diseases affecting corals pose an enormous threat to the health of coral reefs. The relationship between certain bacterial species and coral diseases remain largely unknown. Pigment abnormalities are common in Porites lutea. Here we used Illumina 16S rRNA gene sequencing to analyze the bacterial communities associated with healthy P. lutea and P. lutea with pigment abnormalities. We observed an increase of alpha diversity of the bacterial community of P. lutea with pigment abnormalities, relative to healthy corals. We then identified changes in the abundance of individual operational taxonomic units(OTUs) between pigmented and healthy corals. We were able to identify eight OTUs associated with pigment abnormalities, which are possibly the causative agents of pigment abnormalities. 展开更多
关键词 Porites lutea pigment abnormalities next-generation sequencing 16S rRNA bacterial diversity
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Change in coral reef benthic communities in the Lembeh Strait and Likupang, North Sulawesi, Indonesia
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作者 HADI Tri Aryono SIHOUKA Jimmy +2 位作者 SHI Xiaofeng BUDIYANTO Agus suharsono 《Acta Oceanologica Sinica》 SCIE CAS CSCD 2018年第12期45-54,共10页
Anthropogenic impacts and natural disturbances have been intense recently in the global scale, affecting the composition of coral reef benthic communities from coral to algal dominated reefs. However, this condition d... Anthropogenic impacts and natural disturbances have been intense recently in the global scale, affecting the composition of coral reef benthic communities from coral to algal dominated reefs. However, this condition does not always occur considering corals are able to recover when the stressors falter. This study aims to investigate the change in coral reef benthic communities and the relationship among benthic categories. The study was carried out in 2014 and 2016 at five sites, three sites in the Lembeh Strait and two sites in Likupang, North Sulawesi Province. Underwater Photo Transect(UPT) was used at depth of around 4–6 m in slope areas. The result indicated that the benthic communities were slightly changing: the percent covers of hard corals, sponges, soft corals, macroalgae and substrate categories were not significantly different between the years but category of others, particularly seasonally growing hydroid, increased significantly, occupying the available substrates and overtopping other benthos surrounding. The study also found that there was a significant relationship between the change in benthic gradient and the number of hard coral colonies: when the composition becomes less complex, the number of colony declines. In contrast, the hard coral diversity remained unchanged, suggesting the coral reefs apparently have an ecological resilience(sustainable species diversity) against the change although ecological complexity declines. In addition, the hard coral cover was significantly correlated with soft coral and sponge covers, which did not change significantly among the years. In general, the coral reefs in North Sulawesi might experience a temporary blip due to the increasing percent cover of others, and be predicted to recover as there was no indication of soft corals and sponges to increase significantly. However, it is necessary to investigate the dynamic of benthic communities in different depth gradients to gain a comprehensive understanding as the communities respond differently to the light intensity. 展开更多
关键词 coral reef benthic community percent cover Lembeh Strait Likupang
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