Both activated carbon and magnetite have been reported to promote the syntrophic growth of Geobacter metallireducens and Geobacter sulfurreducens co-cultures, the first model to show direct interspecies electron trans...Both activated carbon and magnetite have been reported to promote the syntrophic growth of Geobacter metallireducens and Geobacter sulfurreducens co-cultures, the first model to show direct interspecies electron transfer (DIET); however, differential transcriptomics of the promotion on co-cultures with these two conductive materials are unknown. Here, the comparative transcriptomic analysis of G. metallireducens and G. sulfurreducens co-cultures with granular activated carbon (GAC) and magnetite was reported. More than 2.6-fold reduced transcript abundances were determined for the uptake hydrogenase genes of G. sulfurreducens as well as other hydrogenases in those co-cultures to which conductive materials had been added. This is consistent with electron transfer in G. metallireducens-G. sulfurreducens co-cultures as evinced by direct interspecies electron transfer (DIET). Transcript abundance for the structural component of electrically conductive pili (e-pili), PilA, was 2.2-fold higher in G. metallireducens, and, in contrast, was 14.9-fold lower in G. sulfurreducens in co-cultures with GAC than in Geobacters co-cultures without GAC. However, it was 9.3-fold higher in G. sulfurreducens in co-cultures with magnetite than in Geobacters co-cultures. Mutation results showed that GAC can be substituted for the e-pili of both strains but magnetite can only compensate for that of G. sulfurreducens, indicating that the e-pili is a more important electron acceptor for the electron donor strain of G. metallireducens than for G. sulfurreducens. Transcript abundance for G. metallireducens c-type cytochrome gene GMET_RS14535, a homologue to c-type cytochrome gene omcE of G. sulfurreducens was 9.8-fold lower in co-cultures with GAC addition, while that for OmcS of G. sulfurreducens was 25.1-fold higher in co-cultures with magnetite, than in that without magnetite. Gene deletion studies showed that neither GAC nor magnetite can completely substitute the cytochrome (OmcE homologous) of G. metallireducens but compensate for the cytochrome (OmcS) of G. sulfurreducens. Moreover, some genes associated with central metabolism were up-regulated in the presence of both GAC and magnetite; however, tricarboxylic acid cycle gene transcripts in G. sulfurreducens were not highly-expressed in each of these amended co-cultures, suggesting that there was considerable redundancy in the pathways utilised by G. sulfurreducens for electron transfer to reduce fumarate with the amendment of GAC or magnetite. These results support the DIET model of G. metallireducens and G. sulfurreducens and suggest that e-pili and cytochromes of the electron donor strain are more important than that of the electron acceptor strain, indicating that comparative transcriptomics may be a promising route by which to reveal different responses of electron donor and acceptor during DIET in co-cultures.展开更多
Research on the last 30 years of architectural heritage conservation in Shanghai would highlight the establishment of both a preliminary system for heritage classification and gradation,as well as an authorised herita...Research on the last 30 years of architectural heritage conservation in Shanghai would highlight the establishment of both a preliminary system for heritage classification and gradation,as well as an authorised heritage institution framework.During the course of this process,different conservation methodologies and models(restorations,additions,relocations,extensions and reconstructions)have been put into practice according to the actual situation of the historic architecture of Shanghai.An overall view shows how architectural heritage conservation in Shanghai has undergone three different phases-initial;experimental;and the deepening conservation phase,on which a fundamental step was given in 2002,when the Shanghai Municipal Government issued the‘Legislation for the Conservation of Historical Areas and Heritage Architecture in Shanghai’,creating a conservation system that is participated by the authorities,academic institutions,design institutions and construction companies.The article also stresses the need to provide for a special system of architectural heritage conservation in Shanghai,acknowledging the specificity of its cultural heritage,administrative system,legislation,codes,building technologies and materials;as well as its particular historical situation.展开更多
Rivers are the primary contributors of iron and other elements to the global oceans.Iron-reducing bacteria play an important biogeochemical role in coupling the iron and carbon redox cycles.However,the extent of chang...Rivers are the primary contributors of iron and other elements to the global oceans.Iron-reducing bacteria play an important biogeochemical role in coupling the iron and carbon redox cycles.However,the extent of changes in community structures and iron-reduction activities of iron-reducing bacteria in riverine and coastal marine sediments remains unclear.This study presents information on the spatial patterns and relative abundance of iron-reducing bacteria in sediments of the Yellow River estuary and the adjacent Bohai Sea.High-throughput sequencing of bacterial 16S rRNA found that the highest relative abundances and diversities were from the estuary(Yellow River-Bohai Sea mixing zone).Pseudomonas,Thiobacillus,Geobacter,Rhodoferax,and Clostridium were the most abundant putative iron-reducing bacteria genera in the sediments of the Yellow River.Vibrio,Shewanella,and Thiobacillus were the most abundant in the sediments of the Bohai Sea.The putative iron-reducing bacterial community was positively correlated with the concentrations of total nitrogen and ammonium in coastal marine sediments,and was significantly correlated with the concentration of nitrate in river sediments.The riverine sediments,with a more diverse iron-reducing bacterial community,exhibited increased activity of Fe(III)reduction in enrichment cultures.The estuary-wide high abundance of putative iron-reducing bacteria suggests that the effect of river-sea interaction on bacterial distribution patterns is high.The results of this study will help the understanding of the biogeochemical cycling of iron in riverine and coastal marine environments.展开更多
基金supported by the Major Research plan(91751112)the General Programme(41371257,41573071)of the National Natural Science Foundation of China+2 种基金Shandong Natural Science Fund for Distinguished Young Scholars(JQ201608)the Young Taishan Scholars Programme of Shandong Province(tsqn20161054)the Key Research Project for Frontier Science of the Chinese Academy of Sciences(QYZDJ-SSW-DQC015)
文摘Both activated carbon and magnetite have been reported to promote the syntrophic growth of Geobacter metallireducens and Geobacter sulfurreducens co-cultures, the first model to show direct interspecies electron transfer (DIET); however, differential transcriptomics of the promotion on co-cultures with these two conductive materials are unknown. Here, the comparative transcriptomic analysis of G. metallireducens and G. sulfurreducens co-cultures with granular activated carbon (GAC) and magnetite was reported. More than 2.6-fold reduced transcript abundances were determined for the uptake hydrogenase genes of G. sulfurreducens as well as other hydrogenases in those co-cultures to which conductive materials had been added. This is consistent with electron transfer in G. metallireducens-G. sulfurreducens co-cultures as evinced by direct interspecies electron transfer (DIET). Transcript abundance for the structural component of electrically conductive pili (e-pili), PilA, was 2.2-fold higher in G. metallireducens, and, in contrast, was 14.9-fold lower in G. sulfurreducens in co-cultures with GAC than in Geobacters co-cultures without GAC. However, it was 9.3-fold higher in G. sulfurreducens in co-cultures with magnetite than in Geobacters co-cultures. Mutation results showed that GAC can be substituted for the e-pili of both strains but magnetite can only compensate for that of G. sulfurreducens, indicating that the e-pili is a more important electron acceptor for the electron donor strain of G. metallireducens than for G. sulfurreducens. Transcript abundance for G. metallireducens c-type cytochrome gene GMET_RS14535, a homologue to c-type cytochrome gene omcE of G. sulfurreducens was 9.8-fold lower in co-cultures with GAC addition, while that for OmcS of G. sulfurreducens was 25.1-fold higher in co-cultures with magnetite, than in that without magnetite. Gene deletion studies showed that neither GAC nor magnetite can completely substitute the cytochrome (OmcE homologous) of G. metallireducens but compensate for the cytochrome (OmcS) of G. sulfurreducens. Moreover, some genes associated with central metabolism were up-regulated in the presence of both GAC and magnetite; however, tricarboxylic acid cycle gene transcripts in G. sulfurreducens were not highly-expressed in each of these amended co-cultures, suggesting that there was considerable redundancy in the pathways utilised by G. sulfurreducens for electron transfer to reduce fumarate with the amendment of GAC or magnetite. These results support the DIET model of G. metallireducens and G. sulfurreducens and suggest that e-pili and cytochromes of the electron donor strain are more important than that of the electron acceptor strain, indicating that comparative transcriptomics may be a promising route by which to reveal different responses of electron donor and acceptor during DIET in co-cultures.
文摘Research on the last 30 years of architectural heritage conservation in Shanghai would highlight the establishment of both a preliminary system for heritage classification and gradation,as well as an authorised heritage institution framework.During the course of this process,different conservation methodologies and models(restorations,additions,relocations,extensions and reconstructions)have been put into practice according to the actual situation of the historic architecture of Shanghai.An overall view shows how architectural heritage conservation in Shanghai has undergone three different phases-initial;experimental;and the deepening conservation phase,on which a fundamental step was given in 2002,when the Shanghai Municipal Government issued the‘Legislation for the Conservation of Historical Areas and Heritage Architecture in Shanghai’,creating a conservation system that is participated by the authorities,academic institutions,design institutions and construction companies.The article also stresses the need to provide for a special system of architectural heritage conservation in Shanghai,acknowledging the specificity of its cultural heritage,administrative system,legislation,codes,building technologies and materials;as well as its particular historical situation.
基金the National Natural Science Foundation of China(nos.91751112.41807325,and 41573071)the senior user project of RV KEXUE(no.KEXUE2018G01)+2 种基金the Key Research Project of Frontier Science(no.QYZDJ-SSW-DQC015)of Chinese Academy of Sciencesthe Natural Science Foundation(no.JQ201608 and ZR2O18MDOI1)the Young Taishan Scholars Program(no.tsqn20161054)of Shandong Province.
文摘Rivers are the primary contributors of iron and other elements to the global oceans.Iron-reducing bacteria play an important biogeochemical role in coupling the iron and carbon redox cycles.However,the extent of changes in community structures and iron-reduction activities of iron-reducing bacteria in riverine and coastal marine sediments remains unclear.This study presents information on the spatial patterns and relative abundance of iron-reducing bacteria in sediments of the Yellow River estuary and the adjacent Bohai Sea.High-throughput sequencing of bacterial 16S rRNA found that the highest relative abundances and diversities were from the estuary(Yellow River-Bohai Sea mixing zone).Pseudomonas,Thiobacillus,Geobacter,Rhodoferax,and Clostridium were the most abundant putative iron-reducing bacteria genera in the sediments of the Yellow River.Vibrio,Shewanella,and Thiobacillus were the most abundant in the sediments of the Bohai Sea.The putative iron-reducing bacterial community was positively correlated with the concentrations of total nitrogen and ammonium in coastal marine sediments,and was significantly correlated with the concentration of nitrate in river sediments.The riverine sediments,with a more diverse iron-reducing bacterial community,exhibited increased activity of Fe(III)reduction in enrichment cultures.The estuary-wide high abundance of putative iron-reducing bacteria suggests that the effect of river-sea interaction on bacterial distribution patterns is high.The results of this study will help the understanding of the biogeochemical cycling of iron in riverine and coastal marine environments.
