Coral reefs support a wide range of organisms in the world,including jellyfish and their benthic relatives.However,quantifying the biodiversity of these organisms in reefs is a challenge because of their uneven distri...Coral reefs support a wide range of organisms in the world,including jellyfish and their benthic relatives.However,quantifying the biodiversity of these organisms in reefs is a challenge because of their uneven distribution and cryptic early life stages,requiring the validation of alternative techniques for biodiversity assessment.Here,the biodiversity and spatial distribution patterns of jellyfish and their benthic relatives,from the Scyphozoa,Hydrozoa,and Ctenophora taxa(hereafter referred to as SHC),were investigated in the coral reefs of Xisha,China,using environmental DNA(eDNA)metabarcoding technology by collecting shallow seawater,mesophotic seawater,and sediment samples.One-hundred and eighty-eight SHC species spanning two phyla(Cnidaria and Ctenophora),three classes,11 orders,65 families,and 104 genera were identified,among which hydrozoans were the most dominant taxa,accounting for 89.81% of all SHC species.SHC species showed low connectivity between shallow and mesophotic habitats,presenting a clear vertical distribution pattern in coral reefs.In the mesophotic coral ecosystems(MCEs),140 SHC species(84.34%)were detected,of which 39.76% were exclusive to MCEs,with Zanclea sp.1,Orthopyxis integra,and Fabienna sphaerica being the dominant species.Additionally,although SHC diversity in seawater was higher than that in the sediment samples,22 species were identified only in the sediment samples,indicating that sediment eDNA may represent a valuable supplementary tool for the investigation of SHC communities in hot spots.In addition to revealing the vast diversity of SHC species occupying coral reef ecosystems in the Xisha Islands,our findings confirm the potential of eDNA metabarcoding as an advanced tool for monitoring the biodiversity of cryptic species.展开更多
Aurelia spp.ephyrae have been reported to form blooms in sea cucumber aquaculture ponds in the Bohai and Yellow Seas.To identify the species,we carried out a genetic analysis of Aurelia spp.ephyrae and medusae based o...Aurelia spp.ephyrae have been reported to form blooms in sea cucumber aquaculture ponds in the Bohai and Yellow Seas.To identify the species,we carried out a genetic analysis of Aurelia spp.ephyrae and medusae based on mitochondrial 16 S rRNA gene.Samples offour Aurelia sp.ephyrae populations were collected in sea cucumber aquaculture ponds and samples offour Aurelia sp.medusae populations were collected in coastal waters.Using a BLASTn search,we found that both the ephyrae collected in the aquaculture ponds and medusae collected in coastal waters belong to Aurelia coerulea.Seventeen haplotypes were recovered from the 16 S rRNA gene.The overall haplotype diversity and nucleotide diversity of the 166 A.coerulea individuals were 0.686%and 0.329%,respectively,indicating high haplotype diversity and low nucleotide diversity.Moreover,the haplotype diversity of ephyrae populations were generally lower than that of medusae populations with close sampling points.The genetic differentiation between ephyrae populations collected in the sea cucumber aquaculture ponds and A.coerulea medusae collected in coastal waters was not significant,suggesting the ephyrae populations in the sea cucumber culture ponds were part of the same genetic group as the medusae populations in the coastal waters.Phylogeographic analysis of the 16 S rRNA region revealed that there was no significant correlation between the haplotypes and the geographic distribution of populations.Pairwise fixation index values showed significant genetic differentiation and limited gene flow between A.coerulea population of Weifang and other locations.展开更多
Bacteria communities in cnidarian jellyfi sh can be harmful to many important aquaculture species,as they can be key vectors of bacterial pathogens.However,our knowledge of bacterial communities associated with jellyf...Bacteria communities in cnidarian jellyfi sh can be harmful to many important aquaculture species,as they can be key vectors of bacterial pathogens.However,our knowledge of bacterial communities associated with jellyfi sh in culture ponds and their potential roles in the regulation of aquaculture species remains unclear.In this study,sequencing based on the bacterial 16S rRNA gene was used to investigate the composition and variation of the bacterial communities associated with hydromedusa Gonionemus vertens in sea cucumber culture ponds and natural marine environment.The associated bacterial communities of G.vertens from the culture ponds in the Yellow Sea and Bohai Sea had signifi cantly diff erent compositions,when compared with those from ambient seawater environment.Furthermore,bacterial communities associated with G.vertens had similar diversity and composition in culture ponds and natural marine environment in the Yellow Sea.There were 31 unique bacterial biomarkers identifi ed in three locations.The major communities were highly abundant in Kiloniellales,Octadecabacter,Polynucleobacter,and Polaribacter,and are related to the environmental information processing.Pathogen candidates such as Vibrionales and Chlamydiales had notably low relative abundances(<1%).The venom of the jellyfi sh was considered responsible for damage to the aquaculture.This study provides important data to help assess the impact of cnidarians-associated bacterial communities on pond aquaculture and the infl uences on material cycling and energy fl ow in marine ecosystems.展开更多
基金Supported by the National Science&Technology Fundamental Resources Investigation Program of China(No.2022FY100603)the Key Project of the NSFC-Shandong Joint Fund(No.U2106208)+1 种基金the National Key Research and Development Program of China(No.2023YFC3108200)the Taishan Scholars Program(No.tsqn202211263)。
文摘Coral reefs support a wide range of organisms in the world,including jellyfish and their benthic relatives.However,quantifying the biodiversity of these organisms in reefs is a challenge because of their uneven distribution and cryptic early life stages,requiring the validation of alternative techniques for biodiversity assessment.Here,the biodiversity and spatial distribution patterns of jellyfish and their benthic relatives,from the Scyphozoa,Hydrozoa,and Ctenophora taxa(hereafter referred to as SHC),were investigated in the coral reefs of Xisha,China,using environmental DNA(eDNA)metabarcoding technology by collecting shallow seawater,mesophotic seawater,and sediment samples.One-hundred and eighty-eight SHC species spanning two phyla(Cnidaria and Ctenophora),three classes,11 orders,65 families,and 104 genera were identified,among which hydrozoans were the most dominant taxa,accounting for 89.81% of all SHC species.SHC species showed low connectivity between shallow and mesophotic habitats,presenting a clear vertical distribution pattern in coral reefs.In the mesophotic coral ecosystems(MCEs),140 SHC species(84.34%)were detected,of which 39.76% were exclusive to MCEs,with Zanclea sp.1,Orthopyxis integra,and Fabienna sphaerica being the dominant species.Additionally,although SHC diversity in seawater was higher than that in the sediment samples,22 species were identified only in the sediment samples,indicating that sediment eDNA may represent a valuable supplementary tool for the investigation of SHC communities in hot spots.In addition to revealing the vast diversity of SHC species occupying coral reef ecosystems in the Xisha Islands,our findings confirm the potential of eDNA metabarcoding as an advanced tool for monitoring the biodiversity of cryptic species.
基金Supported by the Strategic Priority Research Program of the Chinese Academy of Sciences(No.XDA23050301)the Special Exchange Program from the Chinese Academy of Sciences,the National Natural Science Foundation of China(Nos.41576152,41876138)+1 种基金the Instrument Developing Project of the Chinese Academy of Sciences(No.YJKYYQ20180047)the Key Research and Development Program of Yantai(No.2018ZHGY073)。
文摘Aurelia spp.ephyrae have been reported to form blooms in sea cucumber aquaculture ponds in the Bohai and Yellow Seas.To identify the species,we carried out a genetic analysis of Aurelia spp.ephyrae and medusae based on mitochondrial 16 S rRNA gene.Samples offour Aurelia sp.ephyrae populations were collected in sea cucumber aquaculture ponds and samples offour Aurelia sp.medusae populations were collected in coastal waters.Using a BLASTn search,we found that both the ephyrae collected in the aquaculture ponds and medusae collected in coastal waters belong to Aurelia coerulea.Seventeen haplotypes were recovered from the 16 S rRNA gene.The overall haplotype diversity and nucleotide diversity of the 166 A.coerulea individuals were 0.686%and 0.329%,respectively,indicating high haplotype diversity and low nucleotide diversity.Moreover,the haplotype diversity of ephyrae populations were generally lower than that of medusae populations with close sampling points.The genetic differentiation between ephyrae populations collected in the sea cucumber aquaculture ponds and A.coerulea medusae collected in coastal waters was not significant,suggesting the ephyrae populations in the sea cucumber culture ponds were part of the same genetic group as the medusae populations in the coastal waters.Phylogeographic analysis of the 16 S rRNA region revealed that there was no significant correlation between the haplotypes and the geographic distribution of populations.Pairwise fixation index values showed significant genetic differentiation and limited gene flow between A.coerulea population of Weifang and other locations.
基金Supported by the National Key Research and Development Program of China(No.2018YFC1406501)the National Natural Science Foundation of China(Nos.U2106208,42003064,41876138)+1 种基金the Key Research and Development Program of Yantai(No.2020MSGY056)the Shandong Key Laboratory of Marine Ecological Restoration(No.201921)。
文摘Bacteria communities in cnidarian jellyfi sh can be harmful to many important aquaculture species,as they can be key vectors of bacterial pathogens.However,our knowledge of bacterial communities associated with jellyfi sh in culture ponds and their potential roles in the regulation of aquaculture species remains unclear.In this study,sequencing based on the bacterial 16S rRNA gene was used to investigate the composition and variation of the bacterial communities associated with hydromedusa Gonionemus vertens in sea cucumber culture ponds and natural marine environment.The associated bacterial communities of G.vertens from the culture ponds in the Yellow Sea and Bohai Sea had signifi cantly diff erent compositions,when compared with those from ambient seawater environment.Furthermore,bacterial communities associated with G.vertens had similar diversity and composition in culture ponds and natural marine environment in the Yellow Sea.There were 31 unique bacterial biomarkers identifi ed in three locations.The major communities were highly abundant in Kiloniellales,Octadecabacter,Polynucleobacter,and Polaribacter,and are related to the environmental information processing.Pathogen candidates such as Vibrionales and Chlamydiales had notably low relative abundances(<1%).The venom of the jellyfi sh was considered responsible for damage to the aquaculture.This study provides important data to help assess the impact of cnidarians-associated bacterial communities on pond aquaculture and the infl uences on material cycling and energy fl ow in marine ecosystems.
