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Comparative analysis of two newly established Cre rat lines, NeuN- Cre and Thy1- Cre , for neurological research
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作者 Keru Li Chenyang Liu +13 位作者 Gefan Wan Lei Zhang rui fan Xu Zhang Yuanlong Su Jiayue He Ning Liu Feifei Guan Wei Dong Shan Gao Weining Kong Xiaolong Qi Xiaolin Zhang Yuanwu Ma 《Animal Models and Experimental Medicine》 2025年第8期1468-1479,共12页
Background:The Cre/loxP system is most popular in mice,but its application in rats has largely lagged far behind.The rat is vital laboratory animal,especially in toxicological and neurological studies.Generating genet... Background:The Cre/loxP system is most popular in mice,but its application in rats has largely lagged far behind.The rat is vital laboratory animal,especially in toxicological and neurological studies.Generating genetic tools to manipulate neurons in rats could benefit neurological research.Methods:Using the CRISPR/Cas9 system,we inserted a Cre cassette into endogenous Thy1 and NeuN loci.Thy1-Cre rats featured a downstream P2A-linked insertion,while NeuN-Cre was inserted at the transcriptional start site.The Cre activity was assessed by crossing with a Cre reporter(Rosa26 imCherry)rat and through analyzing mCherry expression patterns.The specificity of cell type was further confirmed by immunofluorescence with NeuN antibody.Phenotypic consequences were assessed by crossing with ND1^(LSL) rats to deplete ND1,followed by monitoring weight/survival and conducting motor function tests.Results:We generated two neuron-specific rats(Thy1-Cre and NeuN-Cre),which exhibited high neuron-specific Cre expression in brain and spinal cord with minor leakage in other tissues.Thy1-Cre showed minor leakage in spleen,lung and kidney while NeuN-Cre showed minor leakage in spleen and kidney.ND1^(Thy1-Cre) and ND1^(NeuN-Cre) rats both showed decreased body weights and survival times.The ND1^(NeuN-Cre) rats died within two weeks,while ND1^(Thy1-Cre) rats lived longer with impaired motor function.Conclusions:We successfully generated two neuron-specific NeuN-Cre and Thy1-Cre rats,and systemically analyzed their expression pattern. 展开更多
关键词 CRE ND1 NEUN neuron-specific RAT THY1
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Detector array with digital data acquisition system for charged-particle decay studies
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作者 Hao Jian Xin-Xing Xu +40 位作者 Kai-Long Wang Jia-Jian Liu Chao-Yi Fu Peng-Jie Li Yan-Yun Yang Guang-Xin Zhang Kang Wang fang-fang Duan Long-Hui Ru Guang-Shun Li Bing Ding Yun-Hua Qiang Cen-Xi Yuan Jun-Bing Ma Shi-Wei Xu Yu-Feng Gao rui fan fan-Chao Dai Si-Xian Zha Hao-fan Zhu Jin-Hai Li Shu-Lian Qin Zhi-fang Chang Cheng Kong He-Xuan Yan Hao-Wei Xu Jia-Long Ning Bo-Ren Liu Jie Zhou Yu-Dong Chen Bo-Shuai Cai Yu-Ting Wang Hong-Yi Wu Zhi-Xuan Wang Dong-Sheng Hou Hu-Shan Xu Xiao-Hong Zhou Yu-Hu Zhang Meng Wang Zheng-Guo Hu Jenny Lee 《Nuclear Science and Techniques》 2025年第4期140-150,共11页
A state-of-the-art detector array with a digital data acquisition system has been developed for charged-particle decay studies,includingβ-delayed protons,αdecay,and direct proton emissions from exotic proton-rich nu... A state-of-the-art detector array with a digital data acquisition system has been developed for charged-particle decay studies,includingβ-delayed protons,αdecay,and direct proton emissions from exotic proton-rich nuclei.The digital data acquisition system enables precise synchronization and processing of complex signals from various detectors,such as plastic scintillators,silicon detectors,and germaniumγdetectors.The system's performance was evaluated using theβdecay of^(32)Ar and its neighboring nuclei,produced via projectile fragmentation at the first Radioactive Ion Beam Line in Lanzhou(RIBLL1).Key measurements,including the half-life,charged-particle spectrum,andγ-ray spectrum,were obtained and compared with previous results for validation.Using the implantation–decay method,the isotopes of interest were implanted into two doublesided silicon strip detectors,where their subsequent decays were measured and correlated with preceding implantations using both position and time information.This detection system has potential for further applications,including the study ofβ-delayed charged-particle decay and direct proton emissions from even more exotic proton-rich nuclei. 展开更多
关键词 β-delayed proton decay Double-sided silicon strip detector High-purity germanium detector Digital data acquisition system Implantation–decay correlation
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High-quality genome of Firmiana hainanensis provides insights into the evolution of Malvaceae subfamilies and the mechanism of their wood density formation
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作者 Zeyu Dong Shangkun Jin +11 位作者 rui fan Pengcheng Sun Lei Shao Ting Zhao Haojie Jiang Zhiyuan Zhang Haihong Shang Xueying Guan Yan Hu Tianzhen Zhang Fuyuan Zhu Lei fang 《Journal of Genetics and Genomics》 2025年第6期812-825,共14页
The Malvaceae family,the most diverse family in the order Malvales,consists of nine subfamilies.Within the Firmiana genus of the Sterculioideae subfamily,most species are considered globally vulnerable,yet their genom... The Malvaceae family,the most diverse family in the order Malvales,consists of nine subfamilies.Within the Firmiana genus of the Sterculioideae subfamily,most species are considered globally vulnerable,yet their genomes remain unexplored.Here,we present a chromosome-level genome assembly for a representative Firmiana species,F.hainanensis,2n=40,totaling 1536 Mb.Phylogenomic analysis shows that F.hainanensis and Durio zibethinus have the closest evolutionary relationship,with an estimated divergence time of approximately 21 millions of years ago(MYA)and distinct polyploidization events in their histories.Evolutionary trajectory analyses indicate that fissions and fusions may play a crucial role in chromosome number variation(2n=14 to 2n=96).Analysis of repetitive elements among Malvaceae reveals that the Tekay subfamily(belonging to the Gypsy group)contributes to variation in genome size(ranging from 324 Mb to 1620 Mb).Additionally,genes associated with P450,peroxidase,and microtubules,and thereby related to cell wall biosynthesis,are significantly contracted in F.hainanensis,potentially leading to its lower wood density relative to Hopea hainanensis.Overall,our study provides insights into the evolution of chromosome number,genome size,and the genetic basis of cell wall biosynthesis in Malvaceae species. 展开更多
关键词 Malvaceae species Genome evolution Ancestral karyotype Transposable elements Cell wall biosynthesis
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Possible coexistence of superconductivity and topological electronic states in 1T-RhSeTe
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作者 Tengdong Zhang rui fan +4 位作者 Yan Gao Yanling Wu Xiaodan Xu Dao-Xin Yao Jun Li 《Chinese Physics B》 2025年第2期111-116,共6页
Transition metal dichalcogenides(TMDs), exhibit a range of crystal structures and topological quantum states. The1T phase, in particular, shows promise for superconductivity driven by electron–phonon coupling(EPC), s... Transition metal dichalcogenides(TMDs), exhibit a range of crystal structures and topological quantum states. The1T phase, in particular, shows promise for superconductivity driven by electron–phonon coupling(EPC), strain, pressure,and chemical doping. In this theoretical investigation, we explore 1T-Rh Se Te as a novel type of TMD superconductor with topological electronic states. The optimal doping structure and atomic arrangement of 1T-Rh Se Te are constructed.Phonon spectrum calculations validate the integrity of the constructed doping structure. The analysis of the electron–phonon coupling using the electron–phonon Wannier(EPW) method has confirmed the existence of a robust electron–phonon interaction in 1T-Rh Se Te, resulting in total EPC constant λ = 2.02, the logarithmic average frequency ω_(log)= 3.15 me V and T_c = 4.61 K, consistent with experimental measurements and indicative of its classification as a BCS superconductor.The band structure analysis revealed the presence of Dirac-like band crossing points. The topological non-trivial electronic structures of the 1T-Rh Se Te are confirmed via the evolution of Wannier charge centers(WCCs) and time-reversal symmetryprotected topological surface states(TSSs). These distinctive properties underscore 1T-Rh Se Te as a possible candidate for a topological superconductor, warranting further investigation into its potential implications and applications. 展开更多
关键词 SUPERCONDUCTIVITY topological electronic state transition metal dichalcogenides
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Research Progress on Food Safety Risk Early Warning Mechanism
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作者 Xueyu JIN rui fan Lei WANG 《Agricultural Biotechnology》 2025年第5期50-52,共3页
Food safety has always been a critical issue concerning people s livelihoods.The complexity and diversity of hazardous substances in food make systematical and scientifical identification of potential risk factors aff... Food safety has always been a critical issue concerning people s livelihoods.The complexity and diversity of hazardous substances in food make systematical and scientifical identification of potential risk factors affecting food safety and accurate assessment and early warning for such risks one of the urgent problems for food safety inspection authorities.This paper explored food safety risk identification technologies,food safety risk monitoring technologies,and food safety risk early warning methods,aiming to provide theoretical support and research insights for improving food risk early warning systems. 展开更多
关键词 FOOD Risk early warning Detection technique
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Proteomic analysis of seed germination under salt stress in soybeans 被引量:15
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作者 Xiao-yan XU rui fan +2 位作者 rui ZHENG Chun-mei LI De-yue YU 《Journal of Zhejiang University-Science B(Biomedicine & Biotechnology)》 SCIE CAS CSCD 2011年第7期507-517,共11页
Soybean (Glycine max (L.) Merrill) is a salt-sensitive crop,and its production is severely affected by saline soils.Therefore,the response of soybean seeds to salt stress during germination was investigated at both ph... Soybean (Glycine max (L.) Merrill) is a salt-sensitive crop,and its production is severely affected by saline soils.Therefore,the response of soybean seeds to salt stress during germination was investigated at both physiological and proteomic levels.The salt-tolerant cultivar Lee68 and salt-sensitive cultivar N2899 were exposed to 100 mmol/L NaCl until radicle protrusion from the seed coat.In both cultivars,the final germination percentage was not affected by salt,but the mean germination times of Lee68 and N2899 were delayed by 0.3 and 1.0 d,respectively,compared with controls.In response to salt stress,the abscisic acid content increased,and gibberellic acid (GA1+3) and isopentenyladenosine decreased.Indole-3-acetic acid increased in Lee68,but remained unchanged in N2899.The proteins extracted from germinated seeds were separated using two-dimensional gel electrophoresis (2-DE),followed by Coomassie brilliant blue G-250 staining.About 350 protein spots from 2-DE gels of pH range 3 to 10 and 650 spots from gels of pH range 4 to 7 were reproducibly resolved,of which 18 protein spots showed changes in abundance as a result of salt stress in both cultivars.After matrix-assisted laser desorption ionization-time of flight-mass spectroscopy (MALDI-TOF-MS) analysis of the differentially expressed proteins,the peptide mass fingerprint was searched against the soybean UniGene database and nine proteins were successfully identified.Ferritin and 20S proteasome subunit β-6 were up-regulated in both cultivars.Glyceraldehyde 3-phosphate dehydrogenase,glutathione S-transferase (GST) 9,GST 10,and seed maturation protein PM36 were down-regulated in Lee68 by salt,but still remained at a certain level.However,these proteins were present in lower levels in control N2899 and were up-regulated under salt stress.The results indicate that these proteins might have important roles in defense mechanisms against salt stress during soybean seed germination. 展开更多
关键词 PROTEOMICS Salt stress Seed germination SOYBEAN
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Nimodipine alleviates apoptosis-mediated impairments through the mitochondrial pathway after spinal cord injury 被引量:2
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作者 Yafei CAI rui fan +2 位作者 Tianmiao HUA Huiling LIU Jing LI 《Current Zoology》 SCIE CAS CSCD 北大核心 2011年第3期340-349,共10页
Abstract Spinal cord injury (SCI) remains an unsolved human health challenge. To alleviate the impairments of SCI, we studied the therapeutic effect of nimodipine (an L-type Ca^2+ channel antagonist) on functiona... Abstract Spinal cord injury (SCI) remains an unsolved human health challenge. To alleviate the impairments of SCI, we studied the therapeutic effect of nimodipine (an L-type Ca^2+ channel antagonist) on functional recovery from SCI using Nystrom's method in a mouse model. Eighty-four mice were divided into three groups: control group in which only vertebral plates were cut off without causing any spinal injuries; SCI; and SCI with nimodipine treatment. We assessed the histopathology, apoptosis detection, cell cycle, mitochondrial transmembrane potential, bcl-2/bax and caspase-3 levels of tissue 8 h, 1 d, 3 d and 4 d after trauma to evaluate rehabilitation. Behavioral performances were also assessed before and after nimodipine treatment. Results from inclined plane tests, motor score assessment and histological observations indicated that mice in the nimodipine-treated group rehabilitated better than those in the SCI group. The ratio of apoptosis, caspase-3 and bax expression in the nimodip- ine-treated group were significantly lower than those in the SCI group. The mitochondrial membrane potential and bcl-2 expression were up-regulated in the nimodipine-treated group. Taken together, our results indicate that the inhibition of calcium flux by nimodipine could reduce apoptosis processes and tissue damage through a mitochondrial pathway after spinal cord trauma [Current Zoology 57 (3): 340-349, 2011]. 展开更多
关键词 NIMODIPINE Mitochondrial-pathway Alleviation Spinal cord injury APOPTOSIS
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Preparation and evaluation of tamsulosin hydrochloride sustained-release pellets modified by two-layered membrane techniques 被引量:2
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作者 Jingmin Wang Yinghua Sun +5 位作者 Bo Li rui fan Bing Li Tengrui Yin Ling Rong Jin Sun 《Asian Journal of Pharmaceutical Sciences》 SCIE CAS 2015年第1期31-39,共9页
The aim of the present study was to develop tamsulosin hydrochloride sustained-release pellets using two-layered membrane techniques.Centrifugal granulator and fluidizedbed coater were employed to prepare drug-loaded ... The aim of the present study was to develop tamsulosin hydrochloride sustained-release pellets using two-layered membrane techniques.Centrifugal granulator and fluidizedbed coater were employed to prepare drug-loaded pellets and to employ two-layered membrane coating respectively.The prepared pellets were evaluated for physicochemical characterization,subjected to differential scanning calorimetry(DSC)and in vitro release of different pH.Different release models and scanning electron microscopy(SEM)were utilized to analyze the release mechanism of Harnual■ and home-made pellets.By comparing the dissolution profiles,the ratio and coating weight gain of Eudragit■ NE30D and Eudragit■ L30D55 which constitute the inside membrane were identified as 18:1 and 10%-11%.The coating amount of outside membrane containing Eudragit■ L30D55 was determined to be 0.8%.The similarity factors(f_(2))of home-made capsule and commercially available product(Harnual■)were above 50 in different dissolution media.DSC studies confirmed that drug and excipients had good compatibility and SEM photographs showed the similarities and differences of coating surface between Harnual■ and self-made pellets before and after dissolution.According to Ritger-Peppas model,the two dosage form had different release mechanism. 展开更多
关键词 PREPARATION In vitro evaluation Tamsulosin hydrochloride Sustained-release pellets Drug release mechanism Stability study
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Preparation and stability investigation of tamsulosin hydrochloride sustained release pellets containing acrylic resin polymers with two different techniques 被引量:2
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作者 rui fan Yinghua Sun +3 位作者 Bing Li Ruyi Yang Wenrui Ma Jin Sun 《Asian Journal of Pharmaceutical Sciences》 SCIE CAS 2017年第2期193-201,共9页
The objective of this study was to prepare tamsulosin hydrochloride-sustained release(TSH-SR)pellets which showed good release stability with frame-controlled method.TSH was added to Eudragit~?NE30D and Eudragit~?L30D... The objective of this study was to prepare tamsulosin hydrochloride-sustained release(TSH-SR)pellets which showed good release stability with frame-controlled method.TSH was added to Eudragit~?NE30D and Eudragit~?L30D-55 polymers to form drug-loaded inner core.Afterwards,enteric Eudragit~?L30D-55 polymer was modified on the surface of it to the final product.Dissolution studies showed that TSH-SR pellets were more stable during the coating process,different curing temperatures and storage conditions compared with TSH pellets produced by film-controlled technique.Appearances and glass transition temperatures(Tgs)of free films and surface morphologies observed by scanning electron microscopy(SEM)of blank sustained release pellets prepared by different ratios of Eudragit~?NE30D and Eudragit~?L30D-55 further indicated that temperature and relative humidity(RH)were the key factors when Eudragit~?NE30D blended with Eudragit~?L30D-55 were applied to sustained/controlled release preparations.In addition,SEM identified the surface morphologies of TSH-SR pellets before and after dissolution,which showed intact surface structure and great correlation with release curve respectively. 展开更多
关键词 Eudragit^(■)NE30D Eudragit^(■)L30D-55 Release stability Temperature Relative humidity COALESCENCE
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The regulation of memory effect and its influence on discharge properties of a dielectric barrier discharge driven by bipolar pulse at atmospheric-pressure nitrogen 被引量:2
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作者 rui fan Yaogong WANG +2 位作者 Xigoning ZHANG Zhentao TU Jun ZHANG 《Plasma Science and Technology》 SCIE EI CAS CSCD 2021年第10期150-158,共9页
The regulation of memory effect that the residual charges generated during and after discharge act on the initiation and development of subsequent discharge is explored by adjusting the pulse parameters,which have an ... The regulation of memory effect that the residual charges generated during and after discharge act on the initiation and development of subsequent discharge is explored by adjusting the pulse parameters,which have an influence on the discharge characteristics.The memory effect is quantified by the measurement of‘wall voltage’through a series of reference capacitors.The influences of memory effect on the discharge properties corresponding to rising/falling time50–500 ns,pulse width 0.5–1.5μs,and frequency 200–600 Hz are analyzed.It is found that the‘wall voltage’increases from 1.4 kV to 2.4 kV with rising/falling time from 50 ns to 500 ns,it varies in the range of 0.18 kV with frequency of 200–600 Hz,and 0.17 k V with pulse width of 0.5–1.5μs.The propagation velocity of wavelike ionization under the negative pulse slows down from 2184 km s-1to 1026 km s-1 as the rising/falling time increases from 50 ns to 500 ns due to the weakening of the electric field by the surface memory effect.More intense and uniform emission can be achieved through faster rising/falling time and higher frequency based on the volume memory effect,while pulse width has less influence on the emission uniformity.Furthermore,similar laws are obtained for spectral and discharge intensity.Therefore,the memory effect is most effectively regulated by rising/falling time,and the discharge properties are affected by the surface and volume memory effect. 展开更多
关键词 memory effect discharge properties wall voltage pulse parameters
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Preparation and evaluation of duloxetine hydrochloride enteric-coated pellets with different enteric polymers 被引量:1
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作者 Chen Kuang Yinghua Sun +4 位作者 Bing Li rui fan Jing Zhang Yumin Yao Zhonggui He 《Asian Journal of Pharmaceutical Sciences》 SCIE CAS 2017年第3期216-226,共11页
The main purpose of the present study was to prepare duloxetine hydrochloride(DXH) entericcoated pellets using different enteric polymers. Three layers(drug-loaded layer, barrier layer,and enteric-coated layer) were a... The main purpose of the present study was to prepare duloxetine hydrochloride(DXH) entericcoated pellets using different enteric polymers. Three layers(drug-loaded layer, barrier layer,and enteric-coated layer) were applied to the inert core pellets, successively. The optimal formulation was manufactured by employing suspension layering method in fluidized bed processor(FBP) with varieties of enteric polymers like Aqoat? AS-LF, Eudragit? L30D55 and HPMCP-HP55. The prepared pellets were measured for physical characterization and the in vitro dissolution profile. Scanning electron microscopy(SEM) was conducted to observe the morphology of pellets, and different kinetic models were applied to analyze the release mechanism of Cymbalta? and home-made pellets. The coating weight gain of enteric-coated layer containing Eudragit? L30D55, Aqoat? AS-LF and HP-55 were determined to be 35%, 26% and 24%, respectively. The similarity factors(f2) of self-made capsules with above polymers and commercially available capsules(Cymbalta?) were above 50 in the dissolution medium of pH 6.8 phosphate buffer solution(PBS). SEM figures showed the smooth surfaces of selfprepared pellets using Eudragit? L30D55 and Aqoat? AS-LF, whereas rough surface was found in the HP-55 pellets at day 0, and an impurity was appearing in the condition of 40 ℃/75% relative humidity for 1 month. In conclusion, the pellets prepared by utilizing Eudragit? L30D55 and Aqoat?AS-LF were the optimal preparations based on the dissolution profile and stability. 展开更多
关键词 DULOXETINE HYDROCHLORIDE ENTERIC POLYMERS PREPARATION DISSOLUTION profile Stability
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A closed-form nonlinear model for spatial Timoshenko beam flexure hinge with circular cross-section
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作者 Dan WANG Jie ZHANG +1 位作者 Jiangzhen GUO rui fan 《Chinese Journal of Aeronautics》 SCIE EI CAS CSCD 2019年第11期2526-2537,共12页
Beam flexure hinges can achieve accurate motion and force control through the elastic deformation. This paper presents a nonlinear model for uniform and circular cross-section spatial beam flexure hinges which are com... Beam flexure hinges can achieve accurate motion and force control through the elastic deformation. This paper presents a nonlinear model for uniform and circular cross-section spatial beam flexure hinges which are commonly employed in compliant parallel mechanisms. The proposed beam model takes shear deformations into consideration and hence is applicable to both slender and thick beam flexure hinges. Starting from the first principles, the nonlinear strain measure is derived using beam kinematics and expressed in terms of translational displacements and rotational angles. Second-order approximation is employed in order to make the nonlinear strain within acceptable accuracy. The natural boundary conditions and nonlinear governing equations are derived in terms of rotational Euler angles and subsequently solved for combined end loads. The resulting end load-displacement model, which is compact and closed-form, is proved to be accurate for both slender and thick beam flexure using nonlinear finite element analysis. This beam model can provide designers with more design insight of the spatial beam flexure and thus will benefit the structural design and optimization of compliant manipulators. 展开更多
关键词 Compliant mechanism Load-displacement model Nonlinear analysis Spatial beam flexure hinge(SBFH) Timoshenko beam
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基于CiteSpace和VOSviewer的农户生计策略研究现状
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作者 范蕊 乔蕻强 《管理科学与研究(中英文版)》 2023年第8期167-176,共10页
农户生计策略是农户为实现其生存发展目标,利用现有资产,对生计活动进行选择的行为。为全面了解农户生计策略领域的研究现状及热点趋势,本文以中国知网(CNKI)数据库中“农户生计策略”为主题的1034篇文献为样本,运用可视化软件CiteSpace... 农户生计策略是农户为实现其生存发展目标,利用现有资产,对生计活动进行选择的行为。为全面了解农户生计策略领域的研究现状及热点趋势,本文以中国知网(CNKI)数据库中“农户生计策略”为主题的1034篇文献为样本,运用可视化软件CiteSpace和VOSviewer绘制知识图谱,并进行可视化分析,结果表明:(1)该领域发文量自2005年起,呈现出先增后减的趋势。(2)该领域文献学科分布主要集中在农业经济学科。(3)国家自然科学基金对该领域文献资助篇数最多。(4)高产机构排名前三位的依次是西北农林科技大学、中国科学院大学和兰州大学。(5)发文作者主要以核心作者为节点开展研究,发文量较多的作者有丁士军、苏方和李聪。(6)“生计策略”、“生计资本”、“农户生计”等是出现频次较多的关键词,“乡村振兴”是持续至今的关键词。 展开更多
关键词 农户生计策略 文献计量 研究现状 CITESPACE VOSviewer
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High-quality genomes of Bombax ceiba and Ceiba pentandra provide insights into the evolution of Malvaceae species and differences in their natural fiber development 被引量:1
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作者 Lei Shao Shangkun Jin +18 位作者 Jinwen Chen Guangsui Yang rui fan Zhiyuan Zhang Qian Deng Jin Han Xiaowei Ma Zeyu Dong Hejun Lu Wanying Hu Kai Wang Lisong Hu Zhen Shen Surong Huang Ting Zhao Xueying Guan Yan Hu Tianzhen Zhang Lei fang 《Plant Communications》 SCIE CSCD 2024年第5期189-207,共19页
Members of the Malvaceae family,including Corchorus spp.,Gossypium spp.,Bombax spp.,and Ceiba spp.,are important sources of naturalfibers.In the past decade,the genomes of several Malvaceae species have been assembled... Members of the Malvaceae family,including Corchorus spp.,Gossypium spp.,Bombax spp.,and Ceiba spp.,are important sources of naturalfibers.In the past decade,the genomes of several Malvaceae species have been assembled;however,the evolutionary history of Malvaceae species and the differences in theirfiber development remain to be clarified.Here,we report the genome assembly and annotation of two nat-uralfiber plants from the Malvaceae,Bombax ceiba and Ceiba pentandra,whose assembled genome sizes are 783.56 Mb and 1575.47 Mb,respectively.Comparative analysis revealed that whole-genome duplication and Gypsy long terminal repeat retroelements have been the major causes of differences in chromosome number(2n=14 to 2n=96)and genome size(234 Mb to 2676 Mb)among Malvaceae species.We also used comparative genomic analyses to reconstruct the ancestral Malvaceae karyotype with 11 proto-chromo-somes,providing new insights into the evolutionary trajectories of Malvaceae species.MYB-MIXTA-like 3 is relatively conserved among the Malvaceae and functions infiber cell-fate determination in the epidermis.It appears to perform this function in any tissue where it is expressed,i.e.infibers on the endo-carp of B.ceiba and in ovulefibers of cotton.We identified a structural variation in a cellulose synthase gene and a higher copy number of cellulose synthase-like genes as possible causes of thefiner,less spinnable,weakerfibers of B.ceiba.Our study provides two high-quality genomes of naturalfiber plants and offers insights into the evolution of Malvaceae species and differences in their naturalfiber formation and devel-opment through multi-omics analysis. 展开更多
关键词 Malvaceae species genome evolution ancestral karyotype fiber differentiation
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Power system restoration:a literature review from 2006 to 2016 被引量:29
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作者 Yutian LIU rui fan Vladimir TERZIJA 《Journal of Modern Power Systems and Clean Energy》 SCIE EI 2016年第3期332-341,共10页
Power system restoration has attracted more attention and made great progress recently. Research progress of the power system restoration from 2006 to 2016 is reviewed in this paper, including black-start, network rec... Power system restoration has attracted more attention and made great progress recently. Research progress of the power system restoration from 2006 to 2016 is reviewed in this paper, including black-start, network reconfiguration and load restoration. Some emerging methods and key techniques are also discussed in the context of the integration of variable renewable energy and development of the smart grid. There is a long way to go to achieve automatic self-healing in bulk power systems because of its extreme complexity. However, rapidly developing artificial intelligence technology will eventually enable the step-by-step dynamic decision-making based on the situation awareness of supervisory control and data acquisition systems(SCADA) and wide area measurement systems(WAMS) in the near future. 展开更多
关键词 Large-scale blackout Power system restoration SELF-HEALING Smart grid Renewable energy Wide area measurement system(WAMS) Cyber attack
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RNA modifications:importance in immune cell biology and related diseases 被引量:17
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作者 Lian Cui rui Ma +7 位作者 Jiangluyi Cai Chunyuan Guo Zeyu Chen Lingling Yao Yuanyuan Wang rui fan Xin Wang Yuling Shi 《Signal Transduction and Targeted Therapy》 SCIE CSCD 2022年第10期3811-3836,共26页
RNA modifications have become hot topics recently.By influencing RNA processes,including generation,transportation,function,and metabolization,they act as critical regulators of cell biology.The immune cell abnormalit... RNA modifications have become hot topics recently.By influencing RNA processes,including generation,transportation,function,and metabolization,they act as critical regulators of cell biology.The immune cell abnormality in human diseases is also a research focus and progressing rapidly these years.Studies have demonstrated that RNA modifications participate in the multiple biological processes of immune cells,including development,differentiation,activation,migration,and polarization,thereby modulating the immune responses and are involved in some immune related diseases.In this review,we present existing knowledge of the biological functions and underlying mechanisms of RNA modifications,including N6-methyladenosine(m^(6)A),5-methylcytosine(m^(5)C),N1-methyladenosine(m1 A),N7-methylguanosine(m^(7)G),N4-acetylcytosine(ac^(4)C),pseudouridine(Ψ),uridylation,and adenosine-to-inosine(A-to-I)RNA editing,and summarize their critical roles in immune cell biology.Via regulating the biological processes of immune cells,RNA modifications can participate in the pathogenesis of immune related diseases,such as cancers,infection,inflammatory and autoimmune diseases.We further highlight the challenges and future directions based on the existing knowledge.All in all,this review will provide helpful knowledge as well as novel ideas for the researchers in this area. 展开更多
关键词 DISEASES thereby MODIFICATION
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Efficacy and safety of LY01005 versus goserelin implant in Chinese patients with prostate cancer: A multicenter, randomized, open-label, phase III, non-inferiority trial 被引量:4
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作者 Chengyuan Gu Zengjun Wang +59 位作者 Tianxin Lin Zhiyu Liu Weiqing Han Xuhui Zhang Chao Liang Hao Liu Yang Yu Zhenzhou Xu Shuang Liu Jingen Wang Linghua Jia Xin Yao Wenfeng Liao Cheng Fu Zhaohui Tan Guohua He Guoxi Zhu rui fan Wenzeng Yang Xin Chen Zhizhong Liu Liqiang Zhong Benkang Shi Degang Ding Shubo Chen Junli Wei Xudong Yao Ming Chen Zhanpeng Lu Qun Xie Zhiquan Hu Yinhuai Wang Hongqian Guo Tiwu fan Zhaozhao Liang Peng Chen Wei Wang Tao Xu Chunsheng Li Jinchun Xing Hong Liao Dalin He Zhibin Wu Jiandi Yu Zhongwen Feng Mengxiang Yang Qifeng Dou Quan Zeng Yuanwei Li Xin Gou Guangchen Zhou Xiaofeng Wang Rujian Zhu Zhonghua Zhang Bo Zhang Wanlong Tan Xueling Qu Hongliang Sun Tianyi Gan Dingwei Ye 《Chinese Medical Journal》 SCIE CAS CSCD 2023年第10期1207-1215,共9页
Background:LY01005(Goserelin acetate sustained-release microsphere injection)is a modified gonadotropin-releasing hormone(GnRH)agonist injected monthly.This phase III trial study aimed to evaluated the efficacy and sa... Background:LY01005(Goserelin acetate sustained-release microsphere injection)is a modified gonadotropin-releasing hormone(GnRH)agonist injected monthly.This phase III trial study aimed to evaluated the efficacy and safety of LY01005 in Chinese patients with prostate cancer.Methods:We conducted a randomized controlled,open-label,non-inferiority trial across 49 sites in China.This study included 290 patients with prostate cancer who received either LY01005 or goserelin implants every 28 days for three injections.The primary efficacy endpoints were the percentage of patients with testosterone suppression≤50 ng/dL at day 29 and the cumulative probability of testosterone≤50 ng/dL from day 29 to 85.Non-inferiority was prespecified at a margin of-10%.Secondary endpoints included significant castration(≤20 ng/dL),testosterone surge within 72 h following repeated dosing,and changes in luteinizing hormone,follicle-stimulating hormone,and prostate specific antigen levels.Results:On day 29,in the LY01005 and goserelin implant groups,testosterone concentrations fell below medical-castration levels in 99.3%(142/143)and 100%(140/140)of patients,respectively,with a difference of-0.7%(95%confidence interval[CI],-3.9%to 2.0%)between the two groups.The cumulative probabilities of maintaining castration from days 29 to 85 were 99.3%and 97.8%,respectively,with a between-group difference of 1.5%(95%CI,-1.3%to 4.4%).Both results met the criterion for non-inferiority.Secondary endpoints were similar between groups.Both treatments were well-tolerated.LY01005 was associated with fewer injection-site reactions than the goserelin implant(0%vs.1.4%[2/145]).Conclusion:LY01005 is as effective as goserelin implants in reducing testosterone to castration levels,with a similar safety profile.Trial registration:ClinicalTrials.gov,NCT04563936. 展开更多
关键词 Prostatic neoplasms LY01005 Gonadotropin-releasing hormone agonist Efficacy Safety
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DeepDrug:A general graph-based deep learning framework for drug-drug interactions and drug-target interactions prediction 被引量:4
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作者 Qijin Yin rui fan +3 位作者 Xusheng Cao Qiao Liu rui Jiang Wanwen Zeng 《Quantitative Biology》 CSCD 2023年第3期260-274,共15页
Background:Computational approaches for accurate prediction of drug interactions,such as drug-drug interactions(DDIs)and drug-target interactions(DTIs),are highly demanded for biochemical researchers.Despite the fact ... Background:Computational approaches for accurate prediction of drug interactions,such as drug-drug interactions(DDIs)and drug-target interactions(DTIs),are highly demanded for biochemical researchers.Despite the fact that many methods have been proposed and developed to predict DDIs and DTIs respectively,their success is still limited due to a lack of systematic evaluation of the intrinsic properties embedded in the corresponding chemical structure.Methods:In this paper,we develop DeepDrug,a deep learning framework for overcoming the above limitation by using residual graph convolutional networks(Res-GCNs)and convolutional networks(CNNs)to learn the comprehensive structure-and sequence-based representations of drugs and proteins.Results:DeepDrug outperforms state-of-the-art methods in a series of systematic experiments,including binary-class DDIs,multi-class/multi-label DDIs,binary-class DTIs classification and DTIs regression tasks.Furthermore,we visualize the structural features learned by DeepDrug Res-GCN module,which displays compatible and accordant patterns in chemical properties and drug categories,providing additional evidence to support the strong predictive power of DeepDrug.Ultimately,we apply DeepDrug to perform drug repositioning on the whole DrugBank database to discover the potential drug candidates against SARS-CoV-2,where 7 out of 10 top-ranked drugs are reported to be repurposed to potentially treat coronavirus disease 2019(COVID-19).Conclusions:To sum up,we believe that DeepDrug is an efficient tool in accurate prediction of DDIs and DTIs and provides a promising insight in understanding the underlying mechanism of these biochemical relations. 展开更多
关键词 drug-drug interaction drug-target interaction graph neural network deep learning
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Dynamic State Estimation Based Protection of Mutually Coupled Transmission Lines 被引量:1
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作者 Yu Liu A.P.Meliopoulos +1 位作者 Liangyi Sun rui fan 《CSEE Journal of Power and Energy Systems》 SCIE 2016年第4期6-14,共9页
Mutually coupled lines create challenges for legacy protection schemes.In this paper,a dynamic state estimation based protection(EBP)method is proposed to address these challenges.The method requires GPS synchronized ... Mutually coupled lines create challenges for legacy protection schemes.In this paper,a dynamic state estimation based protection(EBP)method is proposed to address these challenges.The method requires GPS synchronized measurements at both ends of the line and a high fidelity model of the protected line.The paper presents the dynamic model of the protected line and its impact on the performance of the protection scheme.Numerical simulations prove that the method can correctly identify faults,independent of position and type.The work also demonstrates the advantages of the proposed method versus legacy protection functions such as distance protection and line differential.These advantages include reliable and faster detection of internal low impedance faults,inter-circuit faults,and high impedance faults,even in cases of 1)partially coupled lines and 2)lack of measurements in adjacent lines. 展开更多
关键词 Estimation based protection(EBP) high impedance faults inter-circuit faults mutually coupled lines partial coupling
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Computer vision for road imaging and pothole detection:a state-of-the-art review of systems and algorithms 被引量:1
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作者 Nachuan Ma Jiahe fan +4 位作者 Wenshuo Wang JinWu Yu Jiang Lihua Xie rui fan 《Transportation Safety and Environment》 EI 2022年第4期3-18,共16页
Computer vision algorithms have been utilized for 3-D road imaging and pothole detection for over two decades.Nonetheless,there is a lack of systematic survey articles on state-of-the-art(SoTA)computer vision techniqu... Computer vision algorithms have been utilized for 3-D road imaging and pothole detection for over two decades.Nonetheless,there is a lack of systematic survey articles on state-of-the-art(SoTA)computer vision techniques,especially deep learningmodels,developed to tackle these problems.This article first introduces the sensing systems employed for 2-D and 3-D road data acquisition,including camera(s),laser scanners and Microsoft Kinect.It then comprehensively reviews the SoTA computer vision algorithms,including(1)classical 2-D image processing,(2)3-D point cloud modelling and segmentation and(3)machine/deep learning,developed for road pothole detection.The article also discusses the existing challenges and future development trends of computer vision-based road pothole detection approaches:classical 2-D image processing-based and 3-D point cloud modelling and segmentation-based approaches have already become history;and convolutional neural networks(CNNs)have demonstrated compelling road pothole detection results and are promising to break the bottleneck with future advances in self/un-supervised learning for multi-modal semantic segmentation.We believe that this survey can serve as practical guidance for developing the next-generation road condition assessment systems. 展开更多
关键词 Computer vision road imaging pothole detection deep learning image processing point cloud modelling convolutional neural networks
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