The presence of heterozygous individuals in a population is crucial for maintaining genetic diversity,which can positively affect fitness and adaptability to environmental changes.While inbreeding generally reduces th...The presence of heterozygous individuals in a population is crucial for maintaining genetic diversity,which can positively affect fitness and adaptability to environmental changes.While inbreeding generally reduces the proportion of heterozygous individuals in a population,polyploidy tends to increase the proportion.North American Populus tremuloides is one of the most widely distributed and ecologically important tree species in the Northern Hemisphere.However,genetic variation in Mexican populations of P.tremuloides,including the genetic signatures of their adaptation to a variety of environments,remains largely uncharacterized.The aim of this study was to analyze how inbreeding coefficient(FIS)and ploidy are associated with clonal richness,population cover,climate and soil traits in 91 marginal to small,isolated populations of this tree species throughout its entire distribution in Mexico.Genetic variables were determined using 36,810 filtered SNPs derived from genome re-sequencing.We found that FIS was approximately between 0 and e1,indicating an extreme heterozygosity excess.One key contributor to the observed extreme heterozygosity excess was asexual reproduction,although ploidy levels cannot explain this excess.Analysis of all neutral SNPs showed that asexual reproduction was positively correlated with observed heterozygosity(Ho)but negatively correlated with expected heterozygosity(He).Analysis of outlier SNPs also showed that asexual reproductionwas positively correlated with Ho and negatively correlated with He,although this latter correlation was not significant.These findings support the presence of a Meselson effect.展开更多
基金We thank the Mexican Consejo Nacional de Humanidades,Ciencias y Tecnologías(CONAHCYT)for the financial support provided to the first author to carry out his training in the Institutional Doctoral Program in Agricultural and Forestry Sciences(PIDCAFUJED)with Scholarship No.334852financial support with agreement number CONACYT-FRQ-2016:279459 for the project“Genome-wide scans for detecting adaptation to climate and soil in Populus tremuloides as the most widely distributed tree species in North America”Dr.Jesús M.Olivas-García assisted in the sampling in the state of Chihuahua,Mexico,and Katrin Groppe,Thünen Institute of Forest Genetics,Germany,provided excellent lab work.The Emerging Leaders of the Americas Program(ELAP)of the Government of Canada awarded a scholarship and the Institute of Integrative and Systems Biology(IBIS)of Laval University allowed the use of its campus and contributed to the training of the first author.
文摘The presence of heterozygous individuals in a population is crucial for maintaining genetic diversity,which can positively affect fitness and adaptability to environmental changes.While inbreeding generally reduces the proportion of heterozygous individuals in a population,polyploidy tends to increase the proportion.North American Populus tremuloides is one of the most widely distributed and ecologically important tree species in the Northern Hemisphere.However,genetic variation in Mexican populations of P.tremuloides,including the genetic signatures of their adaptation to a variety of environments,remains largely uncharacterized.The aim of this study was to analyze how inbreeding coefficient(FIS)and ploidy are associated with clonal richness,population cover,climate and soil traits in 91 marginal to small,isolated populations of this tree species throughout its entire distribution in Mexico.Genetic variables were determined using 36,810 filtered SNPs derived from genome re-sequencing.We found that FIS was approximately between 0 and e1,indicating an extreme heterozygosity excess.One key contributor to the observed extreme heterozygosity excess was asexual reproduction,although ploidy levels cannot explain this excess.Analysis of all neutral SNPs showed that asexual reproduction was positively correlated with observed heterozygosity(Ho)but negatively correlated with expected heterozygosity(He).Analysis of outlier SNPs also showed that asexual reproductionwas positively correlated with Ho and negatively correlated with He,although this latter correlation was not significant.These findings support the presence of a Meselson effect.
