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Spectrum of Cytogenomic Abnormalities Revealed by Array Comparative Genomic Hybridization on Products of Conception Culture Failure and Normal Karyotype Samples 被引量:4
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作者 Qinghua Zhou Shen-Yin Wu +2 位作者 Katherine Amato Autumn DiAdamo peining li 《Journal of Genetics and Genomics》 SCIE CAS CSCD 2016年第3期121-131,共11页
Approximately 30% of pregnancies after implantation end up in spontaneous abortions, and 50% of them are caused by chromosomal abnormalities. However, the spectrum of genomic copy number variants (CNVs) in products ... Approximately 30% of pregnancies after implantation end up in spontaneous abortions, and 50% of them are caused by chromosomal abnormalities. However, the spectrum of genomic copy number variants (CNVs) in products of conception (POC) and the underlying gene- dosage-sensitive mechanisms causing spontaneous abortions remain largely unknown. In this study, array comparative genornic hybridiza- tion (aCGH) analysis was performed as a salvage procedure for 128 POC culture failure (POC-CF) samples and as a supplemental procedure for 106 POC normal karyotype (POC-NK) samples. Chromosomal abnormalities were detected in 10% of POC-CF and pathogenic CNVs were detected in 3.9% of POC-CF and 5.7% of POC-NK samples. Compiled results from this study and relevant case series through a literature review demonstrated an abnormality detection rate (ADR) of 35% for chromosomal abnormalities in POC-CF samples, 3.7% for pathogenic CNVs in POC-CF samples, and 4.6% for pathogenic CNVs in POC-NK samples. Ingenuity Pathway Analysis (IPA) was performed on the genes from pathogenic CNVs found in POC samples. The denoted primary gene networks suggested that apoptosis and cell proliferation pathways are involved in miscarriage. In summary, a similar spectrum of cytogenomic abnormalities was observed in POC culture success and POC-CF samples. A threshold effect correlating the number of dosage-sensitive genes in a chromosome with the observed frequency of autosomai trisomy is proposed. A rationalized approach using firstly fluorescence in situ hybridization (FISH) testing with probes of chromosomes X/Y/ 18, 13/21, and 15/16/22 for common aneuploidies and polyploidies and secondly aCGH for other cytogenomic abnormalities is recommended for POC-CF samples. 展开更多
关键词 Products of conception (POC) Culture failure Normal karyotype Array comparative genomic hybridization (aCGH) Chromosomal andgenomic abnormalities Apoptosis
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Technology-Driven and Evidence-Based Genomic Analysis for Integrated Pediatric and Prenatal Genetics Evaluation 被引量:4
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作者 Yuan Wei Fang Xu peining li 《Journal of Genetics and Genomics》 SCIE CAS CSCD 2013年第1期1-14,共14页
The first decade since the completion of the Human Genome Project has been marked with rapid development of genomic technologies and their immediate clinical applications. Genomic analysis using oligonucleotide array ... The first decade since the completion of the Human Genome Project has been marked with rapid development of genomic technologies and their immediate clinical applications. Genomic analysis using oligonucleotide array comparative genomic hybridization (aCGH) or single nucleotide polymorphism (SNP) chips has been applied to pediatric patients with developmental and intellectual disabilities (DD/ ID), multiple congenital anomalies (MCA) and autistic spectrum disorders (ASD). Evaluation of analytical and clinical validities of aCGH showed 〉 99% sensitivity and specificity and increased analytical resolution by higher density probe coverage. Reviews of case series, multi-center comparison and large patient-control studies demonstrated a diagnostic yield of 12%--20%; approximately 60% of these abnormalities were recurrent genomic disorders. This pediatric experience has been extended toward prenatal diagnosis. A series of reports indicated approximately 10% of pregnancies with ultrasound-detected structural anomalies and normal cytogenetic findings had genomic abnormalities, and 30% of these abnormalities were syndromic genomic disorders. Evidence-based practice guidelines and standards for implementing genomic analysis and web-delivered knowledge resources for interpreting genomic findings have been established. The progress from this technology-driven and evidence-based genomic analysis provides not only opportunities to dissect disease-causing mechanisms and develop rational therapeutic interventions but also important lessons for integrating genomic sequencing into pediatric and prenatal genetic evaluation. 展开更多
关键词 Genomic analysis Analytical and clinical validity Evidence-based standards and guidelines Integrated genetic evaluation
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Source-configured symmetry-broken hyperbolic polaritons 被引量:4
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作者 Caixing Hu Tian Sun +5 位作者 Ying Zeng Weiliang Ma Zhigao Dai Xiaosheng Yang Xinliang Zhang peining li 《eLight》 2023年第1期136-146,共11页
Polaritons are quasi-particles that combine light with matter,enabling precise control of light at deep subwavelength scales.The excitation and propagation of polaritons are closely linked to the structural symmetries... Polaritons are quasi-particles that combine light with matter,enabling precise control of light at deep subwavelength scales.The excitation and propagation of polaritons are closely linked to the structural symmetries of the host materials,resulting in symmetrical polariton propagation in high-symmetry materials.However,in low-symmetry crystals,symmetry-broken polaritons exist,exhibiting enhanced directionality of polariton propagation for nanoscale light manipulation and steering.Here,we theoretically propose and experimentally demonstrate the existence of symmetry-broken polaritons,with hyperbolic dispersion,in a high-symmetry crystal.We show that an optical disk-antenna positioned on the crystal surface can act as an in-plane polarized excitation source,enabling dynamic tailoring of the asymmetry of hyperbolic polariton propagation in the high-symmetry crystal over a broad frequency range.Additionally,we provide an intuitive analysis model that predicts the condition under which the asymmetric polaritonic behavior is maximized,which is corroborated by our simulations and experiments.Our results demonstrate that the directionality of polariton propagation can be conveniently configured,independent of the structure symmetry of crystals,providing a tuning knob for the polaritonic response and in-plane anisotropy in nanophotonic applications. 展开更多
关键词 Hyperbolic polaritons Near-field excitation Crystal symmetry In-plane polarization CALCITE
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Boron nitride nanoresonators for phonon-enhanced molecular vibrational spectroscopy at the strong coupling limit
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作者 Marta Autore peining li +10 位作者 Irene Dolado Francisco J Alfaro-Mozaz Ruben Esteban Ainhoa Atxabal lix Casanova Luis E Hueso Pablo Alonso-González Javier Aizpurua Alexey Y Nikitin Saül Vélez Rainer Hillenbrand 《Light(Science & Applications)》 SCIE EI CAS CSCD 2017年第1期55-62,共8页
Enhanced light-matter interactions are the basis of surface-enhanced infrared absorption(SEIRA)spectroscopy,and conventionally rely on plasmonic materials and their capability to focus light to nanoscale spot sizes.Ph... Enhanced light-matter interactions are the basis of surface-enhanced infrared absorption(SEIRA)spectroscopy,and conventionally rely on plasmonic materials and their capability to focus light to nanoscale spot sizes.Phonon polariton nanoresonators made of polar crystals could represent an interesting alternative,since they exhibit large quality factors,which go far beyond those of their plasmonic counterparts.The recent emergence of van der Waals crystals enables the fabrication of highquality nanophotonic resonators based on phonon polaritons,as reported for the prototypical infrared-phononic material hexagonal boron nitride(h-BN).In this work we use,for the first time,phonon-polariton-resonant h-BN ribbons for SEIRA spectroscopy of small amounts of organic molecules in Fourier transform infrared spectroscopy.Strikingly,the interaction between phonon polaritons and molecular vibrations reaches experimentally the onset of the strong coupling regime,while numerical simulations predict that vibrational strong coupling can be fully achieved.Phonon polariton nanoresonators thus could become a viable platform for sensing,local control of chemical reactivity and infrared quantum cavity optics experiments. 展开更多
关键词 boron nitride phonon polaritons strong coupling surface-enhanced infrared absorption spectroscopy SEIRA
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Anisotropic polaritons in van der Waals materials 被引量:2
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作者 Weiliang Ma Babar Shabbir +6 位作者 Qingdong Ou Yemin Dong Huanyang Chen peining li Xinliang Zhang Yuerui Lu Qiaoliang Bao 《InfoMat》 SCIE CAS 2020年第5期777-790,共14页
Polaritons in two-dimensional(2D)materials continues to garner significant attention due to their favorable ability of field-confinement and intriguing potential for low-loss and ultrafast optical and photonic devices... Polaritons in two-dimensional(2D)materials continues to garner significant attention due to their favorable ability of field-confinement and intriguing potential for low-loss and ultrafast optical and photonic devices.The recent experimental observation of in-plane anisotropic dispersion in natural van der Waals materials has revealed much richer physics as compared to isotropic plasmonic materials,which provides new insight to manipulate the polaritons and manufacture flat optical devices with unprecedented controls.Herein,we give an overview of the recent progress in in-plane anisotropic polaritons launched and visualized in the near-field range in 2D layered van der Waals materials.Furthermore,future prospects in this promising but emerging field are featured on the basis of its peculiar applications.This review article will stimulate the scientific community to explore other hyperbolic materials and structures in order to develop optical technologies with novel functionalities and further improve the understanding of the exotic photonic phenomena. 展开更多
关键词 hyperbolic materials in-plane anisotropy optical and photonic devices POLARITONS scanning nearfield optical microscopy
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