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Attention-based functional-group coarsegraining:a deep learning framework for molecular prediction and design
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作者 Ming Han Ge Sun +1 位作者 paul f.nealey Juan J.de Pablo 《npj Computational Materials》 2025年第1期3887-3896,共10页
Machine learning(ML)offers considerable promise for the design of new molecules and materials.In real-world applications,the design problem is often domain-specific,and suffers from insufficient data,particularly labe... Machine learning(ML)offers considerable promise for the design of new molecules and materials.In real-world applications,the design problem is often domain-specific,and suffers from insufficient data,particularly labeled data,for ML training.In this study,we report a data-efficient,deep-learning framework for molecular discovery that integrates a coarse-grained functional-group representation with a self-attention mechanism to capture intricate chemical interactions.Our approach exploits group-contribution concepts to create a graph-based intermediate representation of molecules,serving as a low-dimensional embedding that substantially reduces the data demands typically required for training.Using a self-attention mechanism to learn the subtle but highly relevant chemical context of functional groups,the method proposed here consistently outperforms existing approaches for predictions of multiple thermophysical properties.In a case study focused on adhesive polymer monomers,we train on a limited dataset comprising only 6,000 unlabeled and 600 labeled monomers.The resulting chemistry prediction model achieves over 92%accuracy in forecasting properties directly from SMILES strings,exceeding the performance of current state-of-the-art techniques.Furthermore,the latent molecular embedding is invertible,enabling the design pipeline to automatically generate new monomers from the learned chemical subspace.We illustrate this functionality by targeting several properties,including high and low glass transition temperatures(Tg),and demonstrate that our model can identify new candidates with values that surpass those in the training set.The ease with which the proposed framework navigates both chemical diversity and data scarcity offers a promising route to accelerate and broaden the search for functional materials. 展开更多
关键词 chemical interactionsour functional group representation design problem self attention mechanism design new molecules materialsin molecular discovery deep learning machine learning ml offers
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