As a new data management paradigm,knowledge graphs can integrate multiple data sources and achieve quick responses,reasoning and better predictions in drug discovery.Characterized by powerful contagion and a high rate...As a new data management paradigm,knowledge graphs can integrate multiple data sources and achieve quick responses,reasoning and better predictions in drug discovery.Characterized by powerful contagion and a high rate of morbidity and mortality,porcine reproductive and respiratory syndrome(PRRS)is a common infectious disease in the global swine industry that causes economically great losses.Traditional Chinese medicine(TCM)has advantages in low adverse effects and a relatively affordable cost of application,and TCM is therefore conceived as a possibility to treat PRRS under the current circumstance that there is a lack of safe and effective approaches.Here,we constructed a knowledge graph containing common biomedical data from humans and Sus Scrofa as well as information from thousands of TCMs.Subsequently,we validated the effectiveness of the Sus Scrofa knowledge graph by the t-SNE algorithm and selected the optimal model(i.e.,transR)from six typical models,namely,transE,transR,DistMult,ComplEx,RESCAL and RotatE,according to five indicators,namely,MRR,MR,HITS@1,HITS@3 and HITS@10.Based on embedding vectors trained by the optimal model,anti-PRRSV TCMs were predicted by two paths,namely,VHC-Herb and VHPC-Herb,and potential anti-PRRSVTCMs were identified by retrieving the HERB database according to the phar-macological properties corresponding to symptoms of PRRS.Ultimately,Dan Shen's(Salvia miltiorrhiza Bunge)capacity to resist PRRSV infection was validated by a cell experiment in which the inhibition rate of PRRSV exceeded90%when the concentrations of Dan Shen extract were 0.004,0.008,0.016 and 0.032 mg/mL.In summary,this is the first report on the Sus Scrofa knowledge graph including TCM information,and our study reflects the important application values of deep learning on graphs in the swine industry as well as providing accessible TCM resources for PRRS.展开更多
In millimeter wave(mmWave) multiple-input multiple-output(MIMO) systems, hybrid precoding has been widely used to overcome the severe propagation loss. In order to improve the spectrum efficiency with low complexity, ...In millimeter wave(mmWave) multiple-input multiple-output(MIMO) systems, hybrid precoding has been widely used to overcome the severe propagation loss. In order to improve the spectrum efficiency with low complexity, we propose a joint hybrid precoding algorithm for single-user mmWave MIMO systems in this paper. By using the concept of equivalent channel, the proposed algorithm skillfully utilizes the idea of alternating optimization to complete the design of RF precoder and combiner. Then, the baseband precoder and combiner are computed by calculating the singular value decomposition of the equivalent channel. Simulation results demonstrate that the proposed algorithm can achieve satisfactory performance with quite low complexity. Moreover, we investigate the effects of quantization on the analog components and find that the proposed scheme is effective even with coarse quantization.展开更多
Hybrid precoding and combining have been considered as a promising technology, which can provide a compromise between hardware complexity and system performance in millimeter wave multiple-input multiple-output system...Hybrid precoding and combining have been considered as a promising technology, which can provide a compromise between hardware complexity and system performance in millimeter wave multiple-input multiple-output systems. However, most existing hybrid precoder and combiner designs generally assume that infinite resolution phase shifters(PSs) are used to produce the analog beamformers. In a practical scene, the design with accurate PSs can lead to high hardware cost and power consumption. In this paper, we investigate the hybrid precoder and combiner design with finite resolution PSs in millimeter wave systems. We employ alternate optimization as the main strategy to jointly design analog precoder and combiner. In addition, we propose a low complexity algorithm, where the analog beamformers are implemented only by finite resolution PSs to maximize spectral efficiency. Then, the digital precoder and combiner are designed based on the obtained analog beamformers to improve the spectral efficiency. Finally, simulation results and mathematical analysis show that the proposed algorithm with low-resolution PSs can achieve near-optimal performance and have low complexity.展开更多
基金supported by the China Fundamental Research Funds for the Central Universities(No.2662022XXYJ001,2662022JC004,2662023XXPY005)。
文摘As a new data management paradigm,knowledge graphs can integrate multiple data sources and achieve quick responses,reasoning and better predictions in drug discovery.Characterized by powerful contagion and a high rate of morbidity and mortality,porcine reproductive and respiratory syndrome(PRRS)is a common infectious disease in the global swine industry that causes economically great losses.Traditional Chinese medicine(TCM)has advantages in low adverse effects and a relatively affordable cost of application,and TCM is therefore conceived as a possibility to treat PRRS under the current circumstance that there is a lack of safe and effective approaches.Here,we constructed a knowledge graph containing common biomedical data from humans and Sus Scrofa as well as information from thousands of TCMs.Subsequently,we validated the effectiveness of the Sus Scrofa knowledge graph by the t-SNE algorithm and selected the optimal model(i.e.,transR)from six typical models,namely,transE,transR,DistMult,ComplEx,RESCAL and RotatE,according to five indicators,namely,MRR,MR,HITS@1,HITS@3 and HITS@10.Based on embedding vectors trained by the optimal model,anti-PRRSV TCMs were predicted by two paths,namely,VHC-Herb and VHPC-Herb,and potential anti-PRRSVTCMs were identified by retrieving the HERB database according to the phar-macological properties corresponding to symptoms of PRRS.Ultimately,Dan Shen's(Salvia miltiorrhiza Bunge)capacity to resist PRRSV infection was validated by a cell experiment in which the inhibition rate of PRRSV exceeded90%when the concentrations of Dan Shen extract were 0.004,0.008,0.016 and 0.032 mg/mL.In summary,this is the first report on the Sus Scrofa knowledge graph including TCM information,and our study reflects the important application values of deep learning on graphs in the swine industry as well as providing accessible TCM resources for PRRS.
基金supported by NSFC (No. 61571055)fund of SKL of MMW (No. K201815) Important National Science & Technology Specific Projects (2017ZX03001028)
文摘In millimeter wave(mmWave) multiple-input multiple-output(MIMO) systems, hybrid precoding has been widely used to overcome the severe propagation loss. In order to improve the spectrum efficiency with low complexity, we propose a joint hybrid precoding algorithm for single-user mmWave MIMO systems in this paper. By using the concept of equivalent channel, the proposed algorithm skillfully utilizes the idea of alternating optimization to complete the design of RF precoder and combiner. Then, the baseband precoder and combiner are computed by calculating the singular value decomposition of the equivalent channel. Simulation results demonstrate that the proposed algorithm can achieve satisfactory performance with quite low complexity. Moreover, we investigate the effects of quantization on the analog components and find that the proposed scheme is effective even with coarse quantization.
基金supported by NSFC (No. 61571055)fund of SKL of MMW (No. K201815)Important National Science & Technology Specific Projects (2017ZX03001028)
文摘Hybrid precoding and combining have been considered as a promising technology, which can provide a compromise between hardware complexity and system performance in millimeter wave multiple-input multiple-output systems. However, most existing hybrid precoder and combiner designs generally assume that infinite resolution phase shifters(PSs) are used to produce the analog beamformers. In a practical scene, the design with accurate PSs can lead to high hardware cost and power consumption. In this paper, we investigate the hybrid precoder and combiner design with finite resolution PSs in millimeter wave systems. We employ alternate optimization as the main strategy to jointly design analog precoder and combiner. In addition, we propose a low complexity algorithm, where the analog beamformers are implemented only by finite resolution PSs to maximize spectral efficiency. Then, the digital precoder and combiner are designed based on the obtained analog beamformers to improve the spectral efficiency. Finally, simulation results and mathematical analysis show that the proposed algorithm with low-resolution PSs can achieve near-optimal performance and have low complexity.
