This article is the 19th contribution to the fungal diversity notes series,in which 106 taxa distributed in 3 phyla,11 classes,35 orders,and 64 families are treated.Taxa described in the present study include a new fa...This article is the 19th contribution to the fungal diversity notes series,in which 106 taxa distributed in 3 phyla,11 classes,35 orders,and 64 families are treated.Taxa described in the present study include a new family,5 new genera,69 new species,3 new combinations,25 new host,habitat,and geographical records,a new name,a new collection,as well as reinstating a previously suppressed genus.The newly established family is Parasporidesmiaceae and the five new genera described herein are Dematiodidymosporum,Neoacrogenospora,Parasporidesmium,Speluncomyces,and Uniomyces.The 69 new species are Acrocalymma triseptatum,Agaricus darjeelingensis,Annellophorella aquatica,Anteaglonium menghaiense,Balsamia microspora,Bambusicola dehongensis,Barriopsis menglaense,Benjaminiomyces bergonzoi,Camporesiomyces aquaticus,Camporesiomyces wurfbainiae,Cercospora palmata,Chrysomphalina cantharella,Colletotrichum heteropanacicola,Conioscypha guizhouensis,Conioscypha yadongensis,Cora dalfornoae,Cylindromonium brasiliense,Dematiodidymosporum aquaticum,Distoseptispora dinghuensis,Distoseptispora zunyiensis,Ebollia neocarnea,Eudimeromyces aequatorialis,Eudimeromyces euconni,Funalia indica,Fuscosporella ovalis,Fuscosporella yunnanensis,Halobasidium csapodyae,Halokirschsteiniothelia hunanensis,Hongkongmyces xishuangbannaensis,Inocybe ispartaensis,Laboulbenia neofrancoisiana,Lachnella kunmingensis,Lasmenia thailandica,Leptospora cannabini,Lycoperdon sridharii,Myxospora neomasonii,Natipusilla aquatica,Neoacrogenospora aquatica,Neomassaria sinensis,Neovaginatispora juglandis,Niesslia yunnanensis,Ophiocordyceps aseptatospora,Oxneriaria sheosarensis,Paramicrosphaeropsis vitis,Paramyrothecium strychni,Parapaucispora aquatica,Parasporidesmium aquaticum,Parmelia neosaxatilis,Periconia bambusicola,Periconia neohongheensis,Peroneutypa thailandica,Polyozellus albus,Porina magnoliae,Porostereum subspadiceum,Pseudosperma subvolvatum,Pseudothyridariella caseariae,Rhexocercosporidium ferulae,Russula rubroglutinata,Septoriella iranica,Seriascoma asexuale,Sesquicillium flavum,Sirastachys zhongkaiensis,Speluncomyces lunatus,Sporidesmiella yunnanensis,Striaticonidium xishuangbannaensis,Trametopsis indica,Tulostoma hyderabadensis,Uniomyces hakkeijimanus,and Virgaria guizhouensis.The three new combinations are Lycoperdon alpinum,Lycoperdon lloydii,and Lycoperdon macrogemmae.The 25 new records comprise Acremonium sclerotigenum,Agroathelia rolfsii,Alfaria terrestris,Aspergillus cejpii,Colletotrichum brevisporum,Coriolopsis brunneoleuca,Coriolopsis hainanensis,Cytospora tamaricicola,Fomitopsis malicola,Fulvifomes fastuosus,Fulvifomes thailandicus,Funalia cystidiata,Funalia subgallica,Longididymella vitalbae,Lopharia mirabilis,Metarhizium viridulum,Neopestalotiopsis haikouensis,Occultibambusa aquatica,Phaeoacremonium scolyti,Phaeocytostroma virdimurae,Puccinia mysuruensis,Rhizopus stolonifer,Serpula similis,Trametes ellipsospora,and Vamsapriya shiwandashanensis.In addition,the new name is Irpiciporus pseudoxuchilensis,and the new collection is Aspergillus sydowii.The previously suppressed genus Eudimeromyces has been taxonomically reinstated.展开更多
The cryptic lifestyle of most fungi necessitates molecular identification of the guild in environmental studies.Over the past decades,rapid development and affordability of molecular tools have tremendously improved i...The cryptic lifestyle of most fungi necessitates molecular identification of the guild in environmental studies.Over the past decades,rapid development and affordability of molecular tools have tremendously improved insights of the fungal diversity in all ecosystems and habitats.Yet,in spite of the progress of molecular methods,knowledge about functional properties of the fungal taxa is vague and interpretation of environmental studies in an ecologically meaningful manner remains challenging.In order to facilitate functional assignments and ecological interpretation of environmental studies we introduce a user friendly traits and character database FungalTraits operating at genus and species hypothesis levels.Combining the information from previous efforts such as FUNGuild and FunFun together with involvement of expert knowledge,we reannotated 10,210 and 151 fungal and Stramenopila genera,respectively.This resulted in a stand-alone spreadsheet dataset covering 17 lifestyle related traits of fungal and Stramenopila genera,designed for rapid functional assignments of environmental stud-ies.In order to assign the trait states to fungal species hypotheses,the scientific community of experts manually categorised and assigned available trait information to 697,413 fungal ITS sequences.On the basis of those sequences we were able to summarise trait and host information into 92,623 fungal species hypotheses at 1%dissimilarity threshold.展开更多
Molecular phylogenies using 1–4 gene regions and information on ecology,morphology and pigment chemistry were used in a partial revision of the agaric family Hygrophoraceae.The phylogenetically supported genera we re...Molecular phylogenies using 1–4 gene regions and information on ecology,morphology and pigment chemistry were used in a partial revision of the agaric family Hygrophoraceae.The phylogenetically supported genera we recognize here in the Hygrophoraceae based on these and previous analyses are:Acantholichen,Ampulloclitocybe,Arrhenia,Cantharellula,Cantharocybe,Chromosera,Chrysomphalina,Cora,Corella,Cuphophyllus,Cyphellostereum,Dictyonema,Eonema,Gliophorus,Haasiella,Humidicutis,Hygroaster,Hygrocybe,Hygrophorus,Lichenomphalia,Neohygrocybe,Porpolomopsis and Pseudoarmillariella.A new genus that is sister to Chromosera is described as Gloioxanthomyces.Revisions were made at the ranks of subfamily,tribe,genus,subgenus,section and subsection.We present three new subfamilies,eight tribes(five new),eight subgenera(one new,one new combination and one stat.nov.),26 sections(five new and three new combinations and two stat.nov.)and 14 subsections(two new,two stat.nov.).Species of Chromosera,Gliophorus,Humidicutis,and Neohygrocybe are often treated within the genus Hygrocybe;we therefore provide valid names in both classification systems.We used a minimalist approach in transferring genera and creating new names and combinations.Consequently,we retain in the Hygrophoraceae the basal cuphophylloid grade comprising the genera Cuphophyllus,Ampulloclitocybe andCantharocybe,despite weak phylogenetic support.We include Aeruginospora and Semiomphalina in Hygrophoraceae based on morphology though molecular data are lacking.The lower hygrophoroid clade is basal to Hygrophoraceae s.s.,comprising the genera Aphroditeola,Macrotyphula,Phyllotopsis,Pleurocybella,Sarcomyxa,Tricholomopsis and Typhula.展开更多
Correction to:Fungal Diversity(2020)105:116 https://doi.org/10.1007/s13225-020-00466-2 There were errors in the name of author LászlóG.Nagy and in affiliation no.31 in the original publication.The original a...Correction to:Fungal Diversity(2020)105:116 https://doi.org/10.1007/s13225-020-00466-2 There were errors in the name of author LászlóG.Nagy and in affiliation no.31 in the original publication.The original article has been corrected.展开更多
Here we review how evolving species concepts have been applied to understand yeast diversity.Initially,a phenotypic species concept was utilized taking into consideration morphological aspects of colonies and cells,an...Here we review how evolving species concepts have been applied to understand yeast diversity.Initially,a phenotypic species concept was utilized taking into consideration morphological aspects of colonies and cells,and growth profiles.Later the biological species concept was added,which applied data from mating experiments.Biophysical measurements of DNA similarity between isolates were an early measure that became more broadly applied with the advent of sequencing technology,leading to a sequence-based species concept using comparisons of parts of the ribosomal DNA.At present phylogenetic species concepts that employ sequence data of rDNA and other genes are universally applied in fungal taxonomy,including yeasts,because various studies revealed a relatively good correlation between the biological species concept and sequence divergence.The application of genome information is becoming increasingly common,and we strongly recommend the use of complete,rather than draft genomes to improve our understanding of species and their genome and genetic dynamics.Complete genomes allow in-depth comparisons on the evolvability of genomes and,consequently,of the species to which they belong.Hybridization seems a relatively common phenomenon and has been observed in all major fungal lineages that contain yeasts.Note that hybrids may greatly differ in their post-hybridization development.Future in-depth studies,initially using some model species or complexes may shift the traditional species concept as isolated clusters of genetically compatible isolates to a cohesive speciation network in which such clusters are interconnected by genetic processes,such as hybridization.展开更多
The name of the second author was incorrectly captured in the initial online publication,and due to an error at the proofs stage,several proof corrections had been left undone.The original online article has been corr...The name of the second author was incorrectly captured in the initial online publication,and due to an error at the proofs stage,several proof corrections had been left undone.The original online article has been corrected.展开更多
基金the National Natural Science Foundation of China(Grant No.32200015)the Foundation of Guangzhou Municipal Science and Technology Bureau(Grant No.2023A04J1425)+46 种基金the Foundation of Guangzhou Municipal Science and Technology Bureau(Grant No.2023A04J1426)the National Research Council of Thailand(NRCT)Grant“Total fungal diversity in a given forest area with implications towards species numbers,chemical diversity and biotechnology”(Grant No.N42A650547)the Mushroom Research Foundation,Thailand for funding this workthe Distinguished Scientist Fellowship Program(DSFP),King Saud University,Kingdom of Saudi Arabia.Huang Zhang thanks the National Natural Science Foundation of Shandong(Project ID ZR2022MC071 to Huang Zhang)Taishan Scholar Foundation of Shandong Province(tsqn202306276)supported by the Sichuan Science and Technology Program of China(No.2022NSFSC1011)the Scientific and Technical Research Council of Türkiye(TUBİTAK)for the 2219 International Postdoctoral Research Fellowship Programme(Grant No.1059B192202880)the National Science,Research and Innovation Fund:Thailand Science Research Innovation(Basic Research Fund 2021,2022 and 2023)“Biodiversity,taxonomy,phylogeny and evolution of Colletotrichum on avocado,citrus,durian and mango in northern Thailand”,Grant No.652A01003“Biodiversity,taxonomy and phylogeny of Colletotrichum on Citrus and Mango in Northern Thailand,Grant No.662A01002 and 672A010002the National Natural Science Foundation of China(No.32060012)SERB(CRG/2020/006053),DST,New DelhiInstitution of Eminence(R/Dev./D/IoE/Incentive/2021-22/32387)BHU,Varanasi and Bridge Grant(No.SRICC/Bridge Grant/2024-25/3151),BHU,Varanasi for providing the financial supportsfinancially supported by the“Iranian Mycological Society”the National Natural Science Foundation of China(32260004)the Yunnan Revitalization Talents Support Plan(High-End Foreign Experts Program)Yunnan Provincial Department of Science and Technology“Zhihui Yunnan”Plan(202403AM140023)the Key Laboratory of Yunnan Provincial Department of Education of the Deep-Time Evolution on Biodiversity from the Origin of the Pearl River for their supportthe International Research Support Initiative Program(IRSIP)Schemegrateful to JSPS for an Award of a Postdoctoral Fellowship and the Research Grants No.185701000001 and No.18-06620Extramural Research-SERB,DST(EMR/2016/003078),Government of India for the financial assistancegrateful to‘The PCCF’of Tamil Nadu Forest Department for providing permission(E2/20458/2017),assistance and support during field visit in Eastern Ghats of Tamil NaduRUSA 2.0(Theme-1,Group-1/2021/49)for providing GrantTamil Nadu State Council for Higher Education,Chennai(RGP/2019-20/MU/HECP-0040)for financial assistanceCSIR,New Delhi,India(09/0115(13300)/2022-EMR-I)for the financial assistancethe Beijing Natural Science Foundation-International Scientist Project(Project Number 1S24085)for the financial supportgrateful to DST-PURSE Programme PhaseⅡ,University of Calcutta,India for financial supportChiang Mai University for providing financial support and laboratory facilitiesgrateful to the UP System Balik PhD Program(OVPAA-BPhD2022-02)Grant entitled“Unraveling the hidden diversity of aquatic fungi from Panay Island,Philippines”Govt.of India for financial assistance(BT/PR29521/FCB/125/15/2018)financial support provided by DGAPA-PAPIIT,UNAM(Grant Number IN203524)the Department of Science and Technology,Govt.of India for the Award of the JC Bose Fellowship(Grant No.JCB/2017/000053),DBT-BUILDER(BT/INF/22/SP41176/2020)grant to School of life Sciences,Ministry of EducationGovt.of India and Institution of Excellence Directorate,University of Hyderabad for the award of the Project(Grant No.UOH-IOE-RC3-21-065)and Fellowship(RA)to PVSRN Sarmathe IOE-PDRF(UOH/IOE/SEST/PDRF/1)Grant from University of Hyderabadthe Yunnan Provincial Department of Science and Technology“Zhihui Yunnan”Plan(202403AM140023)the High-Level Talent Recruitment Plan of Yunnan Provinces(High-End Foreign Experts Programs and“Young Talents”)the National Natural Science Foundation of China(No.32460002)the Meemann Chang Academician Workstation in Yunnan Province(202225AF150002)Yunnan Province Young and Middle-aged Academic and Technical Leaders Reserve Talents Program(202305AC350252)Fundacao Arthur Bernardes(FUNARBE)for financial support.the CMU Proactive Researcher,Chiang Mai University(Grant Numbers 796/2567 and EX010059)the Doi Tung Development Project for Sample Collection(Permission Number 7700/17142 with the title‘The diversity of saprobic fungi on selected hosts in forest northern Thailand’),Chiang Rai,ThailandChiang Mai University for partially supportthe support from the Agency of Innovative Development under the Ministry of Higher Education,Science and Innovation of the Republic of Uzbekistan(Project No.AL-8724052922)the National Key R&D Program of China(Project No.2025YFE0104500)The Slovak Grant Agency VEGA(grant No.1/0295/20)for financial supportfinancial support from the Institute of Botany,Jagiellonian University,scientific funds(N18/DBS/000002)financial support by the statutory funds of the W.Szafer Institute of Botany,Polish Academy of Sciences.
文摘This article is the 19th contribution to the fungal diversity notes series,in which 106 taxa distributed in 3 phyla,11 classes,35 orders,and 64 families are treated.Taxa described in the present study include a new family,5 new genera,69 new species,3 new combinations,25 new host,habitat,and geographical records,a new name,a new collection,as well as reinstating a previously suppressed genus.The newly established family is Parasporidesmiaceae and the five new genera described herein are Dematiodidymosporum,Neoacrogenospora,Parasporidesmium,Speluncomyces,and Uniomyces.The 69 new species are Acrocalymma triseptatum,Agaricus darjeelingensis,Annellophorella aquatica,Anteaglonium menghaiense,Balsamia microspora,Bambusicola dehongensis,Barriopsis menglaense,Benjaminiomyces bergonzoi,Camporesiomyces aquaticus,Camporesiomyces wurfbainiae,Cercospora palmata,Chrysomphalina cantharella,Colletotrichum heteropanacicola,Conioscypha guizhouensis,Conioscypha yadongensis,Cora dalfornoae,Cylindromonium brasiliense,Dematiodidymosporum aquaticum,Distoseptispora dinghuensis,Distoseptispora zunyiensis,Ebollia neocarnea,Eudimeromyces aequatorialis,Eudimeromyces euconni,Funalia indica,Fuscosporella ovalis,Fuscosporella yunnanensis,Halobasidium csapodyae,Halokirschsteiniothelia hunanensis,Hongkongmyces xishuangbannaensis,Inocybe ispartaensis,Laboulbenia neofrancoisiana,Lachnella kunmingensis,Lasmenia thailandica,Leptospora cannabini,Lycoperdon sridharii,Myxospora neomasonii,Natipusilla aquatica,Neoacrogenospora aquatica,Neomassaria sinensis,Neovaginatispora juglandis,Niesslia yunnanensis,Ophiocordyceps aseptatospora,Oxneriaria sheosarensis,Paramicrosphaeropsis vitis,Paramyrothecium strychni,Parapaucispora aquatica,Parasporidesmium aquaticum,Parmelia neosaxatilis,Periconia bambusicola,Periconia neohongheensis,Peroneutypa thailandica,Polyozellus albus,Porina magnoliae,Porostereum subspadiceum,Pseudosperma subvolvatum,Pseudothyridariella caseariae,Rhexocercosporidium ferulae,Russula rubroglutinata,Septoriella iranica,Seriascoma asexuale,Sesquicillium flavum,Sirastachys zhongkaiensis,Speluncomyces lunatus,Sporidesmiella yunnanensis,Striaticonidium xishuangbannaensis,Trametopsis indica,Tulostoma hyderabadensis,Uniomyces hakkeijimanus,and Virgaria guizhouensis.The three new combinations are Lycoperdon alpinum,Lycoperdon lloydii,and Lycoperdon macrogemmae.The 25 new records comprise Acremonium sclerotigenum,Agroathelia rolfsii,Alfaria terrestris,Aspergillus cejpii,Colletotrichum brevisporum,Coriolopsis brunneoleuca,Coriolopsis hainanensis,Cytospora tamaricicola,Fomitopsis malicola,Fulvifomes fastuosus,Fulvifomes thailandicus,Funalia cystidiata,Funalia subgallica,Longididymella vitalbae,Lopharia mirabilis,Metarhizium viridulum,Neopestalotiopsis haikouensis,Occultibambusa aquatica,Phaeoacremonium scolyti,Phaeocytostroma virdimurae,Puccinia mysuruensis,Rhizopus stolonifer,Serpula similis,Trametes ellipsospora,and Vamsapriya shiwandashanensis.In addition,the new name is Irpiciporus pseudoxuchilensis,and the new collection is Aspergillus sydowii.The previously suppressed genus Eudimeromyces has been taxonomically reinstated.
基金Estonian Science Foundation grants PSG136,PRG632,PUT1170the University of Tartu(PLTOM20903)the European Regional Development Fund(Centre of Excellence EcolChange).
文摘The cryptic lifestyle of most fungi necessitates molecular identification of the guild in environmental studies.Over the past decades,rapid development and affordability of molecular tools have tremendously improved insights of the fungal diversity in all ecosystems and habitats.Yet,in spite of the progress of molecular methods,knowledge about functional properties of the fungal taxa is vague and interpretation of environmental studies in an ecologically meaningful manner remains challenging.In order to facilitate functional assignments and ecological interpretation of environmental studies we introduce a user friendly traits and character database FungalTraits operating at genus and species hypothesis levels.Combining the information from previous efforts such as FUNGuild and FunFun together with involvement of expert knowledge,we reannotated 10,210 and 151 fungal and Stramenopila genera,respectively.This resulted in a stand-alone spreadsheet dataset covering 17 lifestyle related traits of fungal and Stramenopila genera,designed for rapid functional assignments of environmental stud-ies.In order to assign the trait states to fungal species hypotheses,the scientific community of experts manually categorised and assigned available trait information to 697,413 fungal ITS sequences.On the basis of those sequences we were able to summarise trait and host information into 92,623 fungal species hypotheses at 1%dissimilarity threshold.
基金This work was not directly supported by grants,but the following grants were essential in obtaining collections and some sequences used in this work:US NSF Biodiversity Surveys and Inventories Program grants to the Research Foundation of the State University of New York,College at Cortland(DEB-9525902 and DEB-0103621)in collaboration with the USDA-Forest Service,Center for Forest Mycology Research,Forest Products Laboratory in Madison supported collecting in Belize,the Dominican Republic and Puerto Rico.US NSF grant DBI 6338699 to K.W.Hughes and R.H.Peterson at the University of Tennessee,Knoxville supported collecting by E.Lickey,D.J.Lodge,K.W.Hughes,R.Kerrigan,A.Methven,V.P.Hustedt,P.B.Matheny and R.H.Petersen in the Great Smoky Mountain National Park,and sequencing by K.W.Hughes and Lickey.A National Geographic Society’s Committee for Research and Exploration grant to T.J.Baroni(SUNY Cortland)supported the 2007 expedition to Doyle’s Delight in Belize by M.C.Aime,T.J.Baroni and D.J.Lodge.An Explorer’s Club,Washington Group Exploration and Field Research Grant to M.C.Aime and a National Geographic Society’s Committee for Research and Exploration grant to T.Henkel supported collecting in Guyana.
文摘Molecular phylogenies using 1–4 gene regions and information on ecology,morphology and pigment chemistry were used in a partial revision of the agaric family Hygrophoraceae.The phylogenetically supported genera we recognize here in the Hygrophoraceae based on these and previous analyses are:Acantholichen,Ampulloclitocybe,Arrhenia,Cantharellula,Cantharocybe,Chromosera,Chrysomphalina,Cora,Corella,Cuphophyllus,Cyphellostereum,Dictyonema,Eonema,Gliophorus,Haasiella,Humidicutis,Hygroaster,Hygrocybe,Hygrophorus,Lichenomphalia,Neohygrocybe,Porpolomopsis and Pseudoarmillariella.A new genus that is sister to Chromosera is described as Gloioxanthomyces.Revisions were made at the ranks of subfamily,tribe,genus,subgenus,section and subsection.We present three new subfamilies,eight tribes(five new),eight subgenera(one new,one new combination and one stat.nov.),26 sections(five new and three new combinations and two stat.nov.)and 14 subsections(two new,two stat.nov.).Species of Chromosera,Gliophorus,Humidicutis,and Neohygrocybe are often treated within the genus Hygrocybe;we therefore provide valid names in both classification systems.We used a minimalist approach in transferring genera and creating new names and combinations.Consequently,we retain in the Hygrophoraceae the basal cuphophylloid grade comprising the genera Cuphophyllus,Ampulloclitocybe andCantharocybe,despite weak phylogenetic support.We include Aeruginospora and Semiomphalina in Hygrophoraceae based on morphology though molecular data are lacking.The lower hygrophoroid clade is basal to Hygrophoraceae s.s.,comprising the genera Aphroditeola,Macrotyphula,Phyllotopsis,Pleurocybella,Sarcomyxa,Tricholomopsis and Typhula.
文摘Correction to:Fungal Diversity(2020)105:116 https://doi.org/10.1007/s13225-020-00466-2 There were errors in the name of author LászlóG.Nagy and in affiliation no.31 in the original publication.The original article has been corrected.
基金SS and JH were supported by NIH/NIAID R37 MERIT Award AI39115-23NIH/NIAID R01 Award AI50113-16+1 种基金and NIH/NIAID R01 Award AI133654-03EJL was supported by BBSRC Award BB/L022508/1.DB was supported by DFG Award BE 2201/23-1 and BE 2201/28-1.JH is also co-director and fellow of the CIFAR program Fungal Kingdom:Threats&Opportunities.MCA acknowledges USDA Hatch project 1010662.
文摘Here we review how evolving species concepts have been applied to understand yeast diversity.Initially,a phenotypic species concept was utilized taking into consideration morphological aspects of colonies and cells,and growth profiles.Later the biological species concept was added,which applied data from mating experiments.Biophysical measurements of DNA similarity between isolates were an early measure that became more broadly applied with the advent of sequencing technology,leading to a sequence-based species concept using comparisons of parts of the ribosomal DNA.At present phylogenetic species concepts that employ sequence data of rDNA and other genes are universally applied in fungal taxonomy,including yeasts,because various studies revealed a relatively good correlation between the biological species concept and sequence divergence.The application of genome information is becoming increasingly common,and we strongly recommend the use of complete,rather than draft genomes to improve our understanding of species and their genome and genetic dynamics.Complete genomes allow in-depth comparisons on the evolvability of genomes and,consequently,of the species to which they belong.Hybridization seems a relatively common phenomenon and has been observed in all major fungal lineages that contain yeasts.Note that hybrids may greatly differ in their post-hybridization development.Future in-depth studies,initially using some model species or complexes may shift the traditional species concept as isolated clusters of genetically compatible isolates to a cohesive speciation network in which such clusters are interconnected by genetic processes,such as hybridization.
文摘The name of the second author was incorrectly captured in the initial online publication,and due to an error at the proofs stage,several proof corrections had been left undone.The original online article has been corrected.
