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Shape-preserving mesh deformation method of perforated surfaces and application to double-wall turbine blade leading edge
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作者 Zhenyuan ZHANG honglin li +3 位作者 Zhonghao TANG Yajie BAO Yujie ZHAO Lei li 《Chinese Journal of Aeronautics》 2026年第1期313-332,共20页
A Hybrid Free-Form Deformation(HFFD)method is developed to improve shape preservation in mesh deformation for perforated surfaces,which traditional Free-Form Deformation(FFD)techniques struggle to handle effectively.T... A Hybrid Free-Form Deformation(HFFD)method is developed to improve shape preservation in mesh deformation for perforated surfaces,which traditional Free-Form Deformation(FFD)techniques struggle to handle effectively.The proposed method enables high-fidelity parameterized deformation for both flat and curved perforated surfaces while maintaining mesh quality with minimal geometric distortion.To evaluate its effectiveness,comparative studies between HFFD and conventional FFD methods are conducted,demonstrating superior performance in mesh quality and geometric fidelity.The HFFD-based framework is further applied to the Multidisciplinary Design Optimization(MDO)of a double-wall turbine blade leading edge.Results indicate an 11.6%increase in cooling efficiency and a 16.21%reduction in maximum stress.Additionally,compared to traditional geometry-based parameterization in MDO,the HFFD approach improves model processing efficiency by 84.15%and overall optimization efficiency by20.05%.These findings demonstrate HFFD's potential to significantly improve complex engineering design optimization by achieving precise shape preservation and improving computational efficiency. 展开更多
关键词 Double-wall turbine blade Free-form mesh deformation Multidisciplinary design optimization Parameterized mesh deformation Surrogate model
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Artificial intelligence and computational methods in human metabolism research:A comprehensive survey 被引量:1
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作者 Manzhan Zhang Yuxin Wan +2 位作者 Jing Wang Shiliang li honglin li 《Journal of Pharmaceutical Analysis》 2025年第8期1690-1702,共13页
Understanding the metabolism of endogenous and exogenous substances in the human body is essential for elucidating disease mechanisms and evaluating the safety and efficacy of drug candidates during the drug developme... Understanding the metabolism of endogenous and exogenous substances in the human body is essential for elucidating disease mechanisms and evaluating the safety and efficacy of drug candidates during the drug development process.Recent advancements in artificial intelligence(AI),particularly in machine learning(ML)and deep learning(DL)techniques,have introduced innovative approaches to metabolism research,enabling more accurate predictions and insights.This paper emphasizes computational and AI-driven methodologies,highlighting how ML enhances predictive modeling for human metabolism at the molecular level and facilitates integration into genome-scale metabolic models(GEMs)at the omics level.Challenges still remain,including data heterogeneity and model interpretability.This work aims to provide valuable insights and references for researchers in drug discovery and development,ultimately contributing to the advancement of precision medicine. 展开更多
关键词 Metabolism prediction Artificial intelligence Human genome-scale metabolic models Disease mechanisms Drug development CHEMINFORMATICS
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The Convergence of Artificial Intelligence and Microfluidics in Drug Research and Development
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作者 Du Qiao Hongxia li +7 位作者 Xue Zhang Xuhui Chen Jiang Zhang Jianan Zou Danyang Zhao Weiping Zhu Xuhong Qian honglin li 《Engineering》 2025年第12期125-174,共50页
Drug research and development(R&D)plays a crucial role in supporting public health.However,the traditional drug-discovery paradigm is hindered by significant drawbacks,including high costs,lengthy development time... Drug research and development(R&D)plays a crucial role in supporting public health.However,the traditional drug-discovery paradigm is hindered by significant drawbacks,including high costs,lengthy development timelines,high failure rates,and limited output of new drugs.Recent advances in micro/nanotechnology,along with progress in computer science,have positioned microfluidics and artificial intelligence(AI)as promising transformative tools for drug development.Microfluidics offers miniaturized,multiplexed,and versatile platforms for high-dimensional data acquisition,while AI enables the rapid processing of complex,large-scale microfluidic data;together,they are accelerating a paradigm shift in the drug-discovery process.This paper first outlines the mainstream microfluidic strategies and AI models used in drug R&D.It then summarizes and discusses real-world applications of the integrated use of these technologies across various stages of drug discovery,including early drug discovery,drug screening,drug evaluation,drug manufacturing,and drug delivery systems.Finally,the paper examines the main limitations of microfluidics and AI in drug R&D and offers an outlook on the future convergence of these technologies. 展开更多
关键词 Artificial intelligence Machine learning Deep learning MICROFLUIDICS Drug discovery Drug evaluation Drug manufacturing Drug delivery
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Artificial Intelligence in Pharmaceutical Sciences 被引量:17
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作者 Mingkun Lu Jiayi Yin +15 位作者 Qi Zhu Gaole lin Minjie Mou Fuyao liu Ziqi Pan Nanxin You Xichen lian Fengcheng li Hongning Zhang lingyan Zheng Wei Zhang Hanyu Zhang Zihao Shen Zhen Gu honglin li Feng Zhu 《Engineering》 SCIE EI CAS CSCD 2023年第8期37-69,共33页
Drug discovery and development affects various aspects of human health and dramatically impacts the pharmaceutical market.However,investments in a new drug often go unrewarded due to the long and complex process of dr... Drug discovery and development affects various aspects of human health and dramatically impacts the pharmaceutical market.However,investments in a new drug often go unrewarded due to the long and complex process of drug research and development(R&D).With the advancement of experimental technology and computer hardware,artificial intelligence(AI)has recently emerged as a leading tool in analyzing abundant and high-dimensional data.Explosive growth in the size of biomedical data provides advantages in applying AI in all stages of drug R&D.Driven by big data in biomedicine,AI has led to a revolution in drug R&D,due to its ability to discover new drugs more efficiently and at lower cost.This review begins with a brief overview of common AI models in the field of drug discovery;then,it summarizes and discusses in depth their specific applications in various stages of drug R&D,such as target discovery,drug discovery and design,preclinical research,automated drug synthesis,and influences in the pharmaceutical market.Finally,the major limitations of AI in drug R&D are fully discussed and possible solutions are proposed. 展开更多
关键词 Artificial intelligence Machine learning Deep learning Target identification Target discovery Drug design Drug discovery
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A Small-Scale Medication of Leflunomide as a Treatment of COVID-19 in an Open-Label Blank-Controlled Clinical Trial 被引量:8
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作者 Ke Hu Mengmei Wang +9 位作者 Yang Zhao Yunting Zhang Tao Wang Zhishui Zheng Xiaochen li Shaolin Zeng Dong Zhao honglin li Ke Xu Ke Lan 《Virologica Sinica》 SCIE CAS CSCD 2020年第6期725-733,共9页
We recently reported that inhibitors against human dihydroorotate dehydrogenase(DHODH)have broad-spectrum antiviral activities including their inhibitory efficacies on SARS-CoV-2 replication in infected cells.However,... We recently reported that inhibitors against human dihydroorotate dehydrogenase(DHODH)have broad-spectrum antiviral activities including their inhibitory efficacies on SARS-CoV-2 replication in infected cells.However,there are limited data from clinical studies to prove the application of DHODH inhibitors in Coronavirus disease 2019(COVID-19)patients.In the present study,we evaluated Leflunomide,an approved DHODH inhibitor widely used as a modest immune regulator to treat autoimmune diseases,in treating COVID-19 disease with a small-scale of patients.Cases of 10 laboratory-confirmed COVID-19 patients of moderate type with obvious opacity in the lung were included.Five of the patients were treated with Leflunomide,and another five were treated as blank controls without a placebo.All the patients accepted standard supportive treatment for COVID-19.The patients given Leflunomide had a shorter viral shedding time(median of5 days)than the controls(median of 11 days,P=0.046).The patients given Leflunomide also showed a significant reduction in C-reactive protein levels,indicating that immunopathological inflammation was well controlled.No obvious adverse effects were observed in Leflunomide-treated patients,and they all discharged from the hospital faster than controls.This preliminary study on a small-scale compassionate use of Leflunomide provides clues for further understanding of Leflunomide as a potential antiviral drug against COVID-19. 展开更多
关键词 DHODH inhibitors LEFLUNOMIDE Coronavirus disease 2019(COVID-19) Viral shedding time Inflammation
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Numerical simulation of broken pin effects on the flow field and cooling performance of a double-wall cooling configuration 被引量:1
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作者 Wenjing GAO honglin li +2 位作者 Lei li Zhe’nan ZHAO Zhufeng YUE 《Chinese Journal of Aeronautics》 SCIE EI CAS CSCD 2021年第2期358-375,共18页
In this paper, the flow characteristics of the double wall structure are presented and the effect of the broken pin size on the cooling performance and flow field of the double wall configuration is investigated. A pe... In this paper, the flow characteristics of the double wall structure are presented and the effect of the broken pin size on the cooling performance and flow field of the double wall configuration is investigated. A periodic plate model with seven units is adopted, and there are an impingement hole and a film hole in each unit. Under five blowing ratios, six different sizes of the broken pin are compared, and the double wall configuration without broken pins is taken as the baseline.The results show that if the broken pins height is too small, the cooling effectiveness usually cannot be improved. With the presence of broken pins with a height of more than 0.4, the effectiveness is improved due to the enhancement of reattachment and recirculation of coolant. With the increase of the broken pin height, the cooling effectiveness increases. However, the increase of the diameter does not always improve the cooling performance, since the limiting effect of the wall jet. In this study, Case 6 with the largest broken pin always has the best cooling performance, but also the largest flow resistance. In Case 6 temperature is reduced by almost 15 K compared to the baseline, and more areas have relatively higher cooling effectiveness. 展开更多
关键词 Broken pin Computational Fluid Dynamics Cooling performance Double wall configuration Turbine blades
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Regulating single-atom Mn sites by precisely axial pyridinic-nitrogen coordination to stabilize the oxygen reduction
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作者 Yuan Qin Chaozhong Guo +8 位作者 Zihao Ou Chuanlan Xu Qi Lan Rong Jin Yao liu Yingchun Niu Quan Xu Yujun Si honglin li 《Journal of Energy Chemistry》 SCIE EI CAS CSCD 2023年第5期542-552,I0012,共12页
Designing single-atom catalysts for oxygen reduction reaction(ORR)are fashionable but challenging to boost the zinc-air battery performance.Significantly enhanced ORR activity by manganese(Mn)singleatom catalysts can ... Designing single-atom catalysts for oxygen reduction reaction(ORR)are fashionable but challenging to boost the zinc-air battery performance.Significantly enhanced ORR activity by manganese(Mn)singleatom catalysts can be achieved by accurately regulating the coordination number of isolated Mn atoms.Theoretical calculations indicate that the single Mn-N5sites possess lower free energy barrier and higher oxygen adsorption performance than single Mn-N4sites to accelerate the ORR kinetics.Target to it,here we synthesize an atomically dispersed Mn-N5catalyst by precisely axial coordination of pyridinic-N doped into two-dimensional(2D)porous nanocarbon sheets(~3.56 nm thickness),which reveals outstanding catalytic activity and ultrahigh stability for the ORR in zinc-air battery owing to the inhomogeneous charge distribution of Mn-N5sites compared to the conventional single-site Mn-N4catalyst and Pt/C.This work gives a new strategy for in situ regulating the electronic structure of metal single-atoms and further promoting the overall ORR performance in energy systems. 展开更多
关键词 Single-atom manganese catalyst Mn-N5 active moiety Oxygen reduction reaction Coordination number Axial pyridinic-nitrogen coordination
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Mechanism of nanoparticle aggregation in gas-liquid microfluidic mixing
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作者 Hongxia li Xiyang Wang +3 位作者 Du Qiao Jiahao li Weiping Zhu honglin li 《Chinese Chemical Letters》 SCIE CAS CSCD 2024年第4期376-381,共6页
Using gas-liquid segmented micromixers to prepare nanoparticles that have a homogeneous particle size, controllable shape, and monodispersity advantages. Although nanoparticle aggregation within a microfluid has been ... Using gas-liquid segmented micromixers to prepare nanoparticles that have a homogeneous particle size, controllable shape, and monodispersity advantages. Although nanoparticle aggregation within a microfluid has been shown to be affected by the shear effect, the shear effect triggering conditions in gasliquid two-phase flow is unclear and the aggregation behavior of nanoparticles under the shear effect is difficult to predict, resulting in uncontrollable physical and chemical properties of nanoparticle aggregates. In this study, a numerical simulation of nanoparticle aggregation in gas-liquid two-phase flow under the shear effect is performed using the CFD-DEM method. Then, the effects of total flow rate,gas-liquid two-phase flow ratio, and particle volume fraction on particle aggregation were analyzed to achieve control of particle aggregation shape and size. Meanwhile, the triggering mechanism of the shear effect and the mechanism of the shear effect on the aggregation of nanoparticles were clarified. The results show that increasing the total flow rate or decreasing the gas-liquid two-phase flow rate ratio can induce the shear effect, which reduces the particle aggregation size and makes the morphology tend to be spherical. Moreover, increasing the particle volume fraction, and total flow rate or decreasing the gas-liquid two-phase flow rate ratio also increases the number of particle collisions and induce interparticle adhesion. Hence, particle adhesion and the shear effect compete with each other and together affect particle aggregation. 展开更多
关键词 Microfluidic Gas-liquid segmented micromixer Nanoparticle aggregation Shear effect Numerical calculation
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A lateral-immobilization zebrafish microfluidic chip-based system for in vivo real-time evaluation of antithrombotic agents
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作者 lijuan He Hongxia Du +5 位作者 Yi Yang Zhihua Guan Jinjin li honglin li Xudong lin lili Zhu 《Chinese Chemical Letters》 SCIE CAS CSCD 2024年第3期312-315,共4页
Thrombosis remains a major global health concern mainly characterized by high rates of morbidity and mortality.Animal models serve as an indispensable tool to understand the underlying pathogenesis of thrombosis and a... Thrombosis remains a major global health concern mainly characterized by high rates of morbidity and mortality.Animal models serve as an indispensable tool to understand the underlying pathogenesis of thrombosis and assess the efficacy of novel antithrombotic drugs.Currently,zebrafish has emerged as a valuable model organism for thrombosis research.However,the traditional method of studying zebrafish thrombosis requires a laborious and time-consuming procedure,including anesthesia and manual immobilization of zebrafish.In this study,based on hydrodynamic force,a lateral-immobilization zebrafish microfluidic chip(LIZMC)was designed to evaluate the cardiovascular system of multiple larvae within a single microscope field of view.Specifically,coupling with microscope imaging,real-time monitoring of the peripheral blood circulation in the tail of phenylhydrazine(PHZ)-induced zebrafish thrombosis was enabled.Furthermore,the reliability of LIZMC for in vivo evaluation of antithrombotic agents in zebrafish was verified using aspirin.Collectively,this novel LIZMC-based system can be used for in vivo zebrafish thrombosis studies and rapid screening of antithrombotic agents. 展开更多
关键词 Microfluidic chip ZEBRAFISH THROMBOSIS In vivo evaluation Real-time monitor
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Design,synthesis and biological evaluation of fluorescent derivatives of ursolic acid in living cells
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作者 Wenyi Mei lijuan Xie +7 位作者 Xiaodong Zhang Cunjian Shi Fengzhi Wang Qiqi Fu Zhenjiang Zhao honglin li Yufang Xu Zhuo Chen 《Chinese Chemical Letters》 SCIE CAS CSCD 2024年第5期287-289,共3页
Ursolic acid(UA)is a naturally occurring ursane triterpenoid,which exhibits a wide range of unique biological activities.To clarify its mechanism of action(MOA),a series of fluorescent derivatives of UA(5a-c)were desi... Ursolic acid(UA)is a naturally occurring ursane triterpenoid,which exhibits a wide range of unique biological activities.To clarify its mechanism of action(MOA),a series of fluorescent derivatives of UA(5a-c)were designed and synthesized by conjugation with 7-nitrobenzo-2-oxa-1,3-diazole(NBD)fluorophore.Among them,5c exhibited similar anti-proliferative activity with UA against HCT116 cells(half maximal inhibitory concentration(IC_(50))=9.21±0.50μmol/L).Cell imaging experiment indicated that 5c was rapidly taken up in HCT116 cells in a dose and time-dependent manner.Then,5c was found to localize in endoplasmic reticulum(ER),lysosomes,and mitochondria,but not in nucleus of HCT116 cells by confocal microscopy studies.Preliminary MOA proved that UA induced autophagy with a unique intracellular distribution mechanism involving ER and lysosome.In all,our work provides new clues for revealing the molecular mechanism of UA as an antitumor agent. 展开更多
关键词 Pentacyclic triterpenoid Ursolic acid Fluorescent derivatives AUTOPHAGY APOPTOSIS
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Advancements in life-on-a-chip: The impact of “Beyond Limits Manufacturing” technology
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作者 Weiwei He Hongbo Zhang +13 位作者 Xudong lin lili Zhu Tingting Zheng Hao Pei Yang Tian Min Zhang Guoyue Shi Lei Wu Jianlong Zhao Gulinuer Wumaier Shengqing li Yufang Xu honglin li Xuhong Qian 《Chinese Chemical Letters》 SCIE CAS CSCD 2024年第5期13-16,共4页
This review explores the concept of life-on-a-chip,which involves the creation of miniaturized biological systems,such as organs,tissues,and model organisms,on microscale platforms called microfluidic chips.These chip... This review explores the concept of life-on-a-chip,which involves the creation of miniaturized biological systems,such as organs,tissues,and model organisms,on microscale platforms called microfluidic chips.These chips consist of intricately etched channels,wells,and chambers that enable precise control and observation of fluids,cells,and biochemical reactions,facilitating the simulation of various aspects of human or animal physiology and the study of responses to different stimuli,drugs,or disease conditions.The review highlights the application of a novel technology,“Beyond Limit Manufacturing”(BLM),in the development of sophisticated three-dimensional cell models and model organism microchips.Modelorganism-on-a-chip and organ-on-a-chip(OoC)are among the thriving developments in the field of microfluidics,allowing for the reconstruction of living microenvironments and implementation of multiple stimuli.The review discusses the latest advancements in life-on-a-chip technology using BLM and outlines potential future research directions,emphasizing the significant role of these chips in studying complex biological processes in a controlled and scalable manner. 展开更多
关键词 Beyond Limit Manufacturing Model-organism-on-a-chip Organ-on-a-chip
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邛崃山区山地生态系统抵御非本地物种入侵的机制
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作者 李红林 罗川 +4 位作者 罗鹏 杨浩 黄瑜 倪铭 吴素娟 《生物多样性》 北大核心 2025年第10期62-76,共15页
气候变化和人为干扰背景下非本地物种的入侵问题日益加剧,已成为全球生物多样性下降的重要驱动因素。尽管山区被视为全球变化下生物多样性的“避难所”,但其抵御非本地物种入侵的生态机制仍不明确。为探讨山地生态系统对非本地植物入侵... 气候变化和人为干扰背景下非本地物种的入侵问题日益加剧,已成为全球生物多样性下降的重要驱动因素。尽管山区被视为全球变化下生物多样性的“避难所”,但其抵御非本地物种入侵的生态机制仍不明确。为探讨山地生态系统对非本地植物入侵的抵御机制,本研究基于中国邛崃山区134个植物群落的数据,评估了系统发育距离与本地物种多样性对非本地物种入侵程度的影响;通过广义线性混合模型、Bayesian结构方程模型与随机森林等方法,系统分析了环境因子、生物因子及人为干扰在入侵中的作用及其相对重要性。结果表明,非本地物种的出现概率和多度均随其与本地物种系统发育距离(尤其是平均最近类群距离(MNTD))的增加而显著下降,支持预适应假说,即系统发育邻近性可促进非本地物种入侵;即使控制本地物种多样性的影响,预适应效应仍然显著。相比之下,本地物种丰富度、多度和系统发育多样性均表现出对非本地物种入侵的显著抑制作用,验证了生物阻抗假说。多因素对入侵程度相对贡献的分析发现,MNTD是非本地物种入侵程度最重要的预测因子,而本地植物群落特征的重要性相对较低。本研究支持邛崃山区山地生态系统非本地物种入侵的屏障效应主要源于环境过滤效应这一观点,同时也发现本地植物群落特征对非本地物种也产生了一定阻抗能力,但人为干扰和环境梯度(如海拔)将削弱环境过滤效应的有效性。本研究结果提示,山区需重点防控与本地物种亲缘关系较近的非本地物种,同时,自然保护措施如维持本地植物群落物种多样性、限制人为干扰是维护山地生态系统入侵抗性的有效途径。 展开更多
关键词 非本地物种 山地生态系统 系统发育距离 生物抵抗
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抗体偶联药物在非小细胞肺癌一线治疗耐药后的应用进展
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作者 李红临 景亚婉 +2 位作者 孙佳怡 徐静 李亚伦 《中国肺癌杂志》 北大核心 2025年第9期710-720,共11页
抗体偶联药物(antibody-drug conjugates, ADC)作为一类新型抗肿瘤药物,将肿瘤特异性靶向与强效细胞毒作用相结合。近年来,ADC在非小细胞肺癌(non-small cell lung cancer, NSCLC)治疗领域取得重要进展,尤其在一线治疗失败或出现耐药后... 抗体偶联药物(antibody-drug conjugates, ADC)作为一类新型抗肿瘤药物,将肿瘤特异性靶向与强效细胞毒作用相结合。近年来,ADC在非小细胞肺癌(non-small cell lung cancer, NSCLC)治疗领域取得重要进展,尤其在一线治疗失败或出现耐药后的治疗序列中显示出突出的临床价值。本文拟系统综述NSCLC中常见治疗靶点及其代表性ADC的疗效与安全性证据,并进一步讨论ADC在分子结构优化、毒性管理、生物标志物筛选以及联合治疗策略等方面的进展与面临的挑战,旨在为临床实践与后续研究提供全面的理论依据与参考。 展开更多
关键词 肺肿瘤 抗体偶联药物 耐药性 应对策略
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“新工科”背景下地方应用型本科高校化学与材料类“一体两翼”创新人才培养模式探索与实践 被引量:3
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作者 李宏林 杨绳岩 +6 位作者 张晓菲 王小东 张杨 韩阳 秦国旭 李川 刘凡凡 《大学化学》 2025年第11期83-91,共9页
地方应用型高校化学与材料类“新工科”专业为地方经济社会发展承担着培养高素质、应用型人才的重任。本文阐述了巢湖学院化学与材料工程学院化材类“一体两翼”创新人才培养模式的探索与实践,着重介绍了校企共组双能师资队伍、共修人... 地方应用型高校化学与材料类“新工科”专业为地方经济社会发展承担着培养高素质、应用型人才的重任。本文阐述了巢湖学院化学与材料工程学院化材类“一体两翼”创新人才培养模式的探索与实践,着重介绍了校企共组双能师资队伍、共修人才培养方案、共设特色课程、共创实践平台“四共双赢”产教融合育人新局面和1个核心理念、2个科研团队、2类项目驱动、5个科教转化、5个递进阶段、6个育人成效“122556”科教融汇育人机制实施路径及主要成效,为“新工科”背景下地方应用型高校化材类人才培养模式探索提供参考。 展开更多
关键词 新工科 人才培养 产教融合 科教融汇
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The Future of AI-Driven RNA Drug Development
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作者 Yilin Yan Tianyu Wu +2 位作者 honglin li Yang Tang Feng Qian 《Engineering》 2025年第12期21-23,共3页
“A child receiving a single shot containing mRNA vaccines that protect against multiple diseases,all delivered with one lipid nanoparticle”—this is how Professor Drew Weissman,the 2023 Nobel laureate in Physiology ... “A child receiving a single shot containing mRNA vaccines that protect against multiple diseases,all delivered with one lipid nanoparticle”—this is how Professor Drew Weissman,the 2023 Nobel laureate in Physiology or Medicine[1],described the potential of messenger RNA(mRNA)therapy in an interview with Forbes[2].In 2024,the Nobel Prize was again awarded to RNA researchers,this time to Victor Ambros and Gary Ruvkun for the discovery of microRNA and its role in post-transcriptional gene regulation[3],further underscoring the transformative capacity of RNA therapeutics in the 21st century healthcare. 展开更多
关键词 mrna vaccines messenger rna mrna therapy lipid nanoparticle RNA therapy drug development vaccines gene regulation MRNA
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EvoNB: A protein language model-based workflow for nanobody mutation prediction and optimization
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作者 Danyang Xiong Yongfan Ming +7 位作者 Yuting li Shuhan li Kexin Chen Jinfeng liu lili Duan honglin li Min li Xiao He 《Journal of Pharmaceutical Analysis》 2025年第6期1334-1343,共10页
The identification and optimization of mutations in nanobodies are crucial for enhancing their thera-peutic potential in disease prevention and control.However,this process is often complex and time-consuming,which li... The identification and optimization of mutations in nanobodies are crucial for enhancing their thera-peutic potential in disease prevention and control.However,this process is often complex and time-consuming,which limit its widespread application in practice.In this study,we developed a work-flow,named Evolutionary-Nanobody(EvoNB),to predict key mutation sites of nanobodies by combining protein language models(PLMs)and molecular dynamic(MD)simulations.By fine-tuning the ESM2 model on a large-scale nanobody dataset,the ability of EvoNB to capture specific sequence features of nanobodies was significantly enhanced.The fine-tuned EvoNB model demonstrated higher predictive accuracy in the conserved framework and highly variable complementarity-determining regions of nanobodies.Additionally,we selected four widely representative nanobodyeantigen complexes to verify the predicted effects of mutations.MD simulations analyzed the energy changes caused by these mu-tations to predict their impact on binding affinity to the targets.The results showed that multiple mu-tations screened by EvoNB significantly enhanced the binding affinity between nanobody and its target,further validating the potential of this workflow for designing and optimizing nanobody mutations.Additionally,sequence-based predictions are generally less dependent on structural absence,allowing them to be more easily integrated with tools for structural predictions,such as AlphaFold 3.Through mutation prediction and systematic analysis of key sites,we can quickly predict the most promising variants for experimental validation without relying on traditional evolutionary or selection processes.The EvoNB workflow provides an effective tool for the rapid optimization of nanobodies and facilitates the application of PLMs in the biomedical field. 展开更多
关键词 NANOBODY Protein language models(PLMs) ESM2 model Evolutionary-nanobody(EvoNB) MD simulations AlphaFold 3
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Experimental study of methane hydrate formation and rheological behavior in gas-water-sand system
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作者 Cheng Yu lin Wang +4 位作者 Chuanjun Han Mingjun Du Rui Xie honglin li Fangjun Zuo 《Chinese Journal of Chemical Engineering》 2025年第7期315-324,共10页
During the production of natural gas hydrates,micron-sized sand particles coexist with hydrate within the transportation pipeline,posing a significant threat to the safety of pipeline flow.However,the influence of san... During the production of natural gas hydrates,micron-sized sand particles coexist with hydrate within the transportation pipeline,posing a significant threat to the safety of pipeline flow.However,the influence of sand particles on hydrate formation mechanisms and rheological properties remains poorly understood.Consequently,using a high-pressure reactor system,the phase equilibrium conditions,hydrate formation characteristics,hydrate concentration,and the slurry viscosity in micron-sized sand system are investigated in this work.Furthermore,the effects of sand particle size,sand concentration,and initial pressure on these properties are analyzed.The results indicate that a high concentration of micron-sized sand particles enhances the formation of methane hydrates.When the volume fraction of sand particles exceeds or equals 3%,the phase equilibrium conditions of the methane hydrate shift to the left relative to that of the pure water system(lower temperature,higher pressure).This shift becomes more pronounced with smaller particle sizes.Besides,under these sand concentration conditions,methane hydrates exhibit secondary or even multiple formation events,though the formation rate decreases.Additionally,the torque increases significantly and fluctuates considerably.The Roscoe-Brinkman model yields the most accurate slurry viscosity calculations,and as sand concentration increases,both hydrate concentration and slurry viscosity also increase. 展开更多
关键词 HYDRATE Micron-sized sand Phase equilibria Hydrate formation Rheological behavior VISCOSITY
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Design of a Multi-Valent SARS-CoV-2 Peptide Vaccine for Broad Immune Protection via Deep Learning
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作者 Ziyan Feng Xuelian Pang +4 位作者 Qian Xu Zijie Gu Shiliang li lili Zhu honglin li 《Engineering》 2025年第9期142-159,共18页
The emergence of severe acute respiratory syndrome coronavirus 2(SARS-CoV-2)variants capable of evading both convalescent and vaccine-triggered antibody responses has underscored the pivotal role of T-cell immunity in... The emergence of severe acute respiratory syndrome coronavirus 2(SARS-CoV-2)variants capable of evading both convalescent and vaccine-triggered antibody responses has underscored the pivotal role of T-cell immunity in antiviral defense.Here,we develop the ConFormer network for epitope prediction,which couples convolutional neural network(CNN)local features with Transformer global representations to enhance binding prediction performance,and employ the deep learning algorithm and bioinformatics workflows to identify conserved T-cell epitopes within the SARS-CoV-2 proteome.Five epitopes are identified as potential inducers of T-cell immune responses.Notably,the multi-valent vaccine composed of these five peptides significantly activates cluster of differentiation(CD)8^(+)and CD4^(+)T cells both in vitro and in vivo.The serum of mice immunized with this vaccine is able to neutralize the five major SARS-CoV-2 variants of concern.This study provides a candidate peptide vaccine with the potential to trigger antiviral T-cell responses,thereby offering the prospect of immune protection against SARS-CoV-2 variants. 展开更多
关键词 SARS-CoV-2 Deep learning CONFORMER Multi-epitope vaccine T-cell immunity
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Full-space built-in electric field inside gradient Sn-dopedβ-Ga_(2)O_(3)photoanodes for enhanced photoelectrochemical solar-blind UV photodetection
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作者 Ke Zhai Hong Zhang +8 位作者 Shiyi li Jieneng Chen Pukai Zhou Hang Cui Di Pang Yan Tang lijuan Ye honglin li Wanjun li 《Science China Materials》 2026年第3期1420-1431,共12页
β-Ga_(2)O_(3)is a promising candidate for solarblind ultraviolet photodetection owing to its suitable bandgap of approximately 4.9 eV,excellent photoresponse characteristics,and high stability.However,the lack of a s... β-Ga_(2)O_(3)is a promising candidate for solarblind ultraviolet photodetection owing to its suitable bandgap of approximately 4.9 eV,excellent photoresponse characteristics,and high stability.However,the lack of a sufficient driving force within the material leads to extensive bulk charge recombination,limiting its photocurrent and thus posing significant challenges in designing high-performance Ga_(2)O_(3)-based photodetection.In this study,we propose a gradient doping strategy to achieve a Sn-doping concentration gradient along theβ-Ga_(2)O_(3)film thickness.By combining sol-gel synthesis with rapid thermal annealing,a spatially graded band structure with a full-space built-in electric field is constructed,which increases the width of band bending over a large region and is crucial for significantly enhancing carrier separation and transport in the bulk.The resulting gradient Sn-dopedβ-Ga_(2)O_(3)enables exceptional photoelectric performance without an external bias under 254 nm irradiation,including a superior responsivity of 66.88 mA W^(-1),a high detectivity of 8.12×10^(11)Jones,and a fast rise/decay time of 79/65 ms,outstanding most existing similar reported photoelectrochemical(PEC)type optoelectronic devices.Additionally,the device exhibits excellent long-term stability and enables high-resolution underwater ultraviolet imaging.This study demonstrates that the gradient doping strategy provides a feasible approach for enhancing the PEC performance ofβ-Ga_(2)O_(3)photoelectrodes. 展开更多
关键词 gallium oxide gradient doping solar-blind ultraviolet photodetector self-powered photoelectrochemical device
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榄香烯对肿瘤恶病质小鼠细胞因子TNF-ɑ IL-6和骨骼肌UPP信号通路的调节作用 被引量:8
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作者 尹爱凝 李宏林 姚娓 《中国肿瘤临床》 CAS CSCD 北大核心 2021年第9期440-445,共6页
目的:研究通过建立肿瘤恶病质小鼠模型,研究榄香烯对肿瘤恶病质骨骼肌萎缩的缓解作用及其可能的机制。方法:C57BL/6小鼠皮下注射Lewis肺腺癌肿瘤细胞建立肿瘤恶病质模型。随机分为健康组、恶病质模型组、醋酸甲地孕酮组和榄香烯组。榄... 目的:研究通过建立肿瘤恶病质小鼠模型,研究榄香烯对肿瘤恶病质骨骼肌萎缩的缓解作用及其可能的机制。方法:C57BL/6小鼠皮下注射Lewis肺腺癌肿瘤细胞建立肿瘤恶病质模型。随机分为健康组、恶病质模型组、醋酸甲地孕酮组和榄香烯组。榄香烯口服乳等治疗14 d后,测量小鼠每日饮食量、肿瘤重量、去瘤体重、腓肠肌和胫骨前肌重量、肝脏重量,H&E染色检测腓肠肌肌丝横截面积,ELISA法检测血清IL-6和TNF-α水平,Western Blot检测腓肠肌中MAFBx、MURF-1的蛋白表达水平。结果:榄香烯组小鼠饮食量、去瘤体重及腓肠肌加胫骨前肌总重量较恶病质模型组增加,腓肠肌横截面积较恶病质模型组面积增大,IL-6及TNF-α水平较恶病质模型组明显下降,MAFBx、MURF-1的蛋白表达水平明显低于恶病质模型组(P<0.05)。同时,相对于醋酸甲地孕酮组,榄香烯组小鼠腓肠肌横截面积增大,IL-6及TNF-α水平降低,MAFBx、MURF-1的蛋白表达受到抑制(P<0.05)。结论:榄香烯可减轻肿瘤恶病质的骨骼肌萎缩,其机制可能与减少小鼠的能量消耗、降低血清TNF-α和IL-6水平、降低骨骼肌MAFBx、MURF-1的蛋白表达水平、调节UPP信号通路的活性有关。 展开更多
关键词 肿瘤恶病质 榄香烯 骨骼肌消耗 细胞因子 泛素-蛋白酶体信号通路
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