Passion fruit(Passiflora edulis Sims)is an economically valuable fruit that is cultivated in tropical and subtropical regions of the world.Here,we report an~1341.7Mb chromosome-scale genome assembly of passion fruit,w...Passion fruit(Passiflora edulis Sims)is an economically valuable fruit that is cultivated in tropical and subtropical regions of the world.Here,we report an~1341.7Mb chromosome-scale genome assembly of passion fruit,with 98.91%(~1327.18Mb)of the assembly assigned to nine pseudochromosomes.The genome includes 23,171 protein-coding genes,and most of the assembled sequences are repetitive sequences,with long-terminal repeats(LTRs)being the most abundant.Phylogenetic analysis revealed that passion fruit diverged after Brassicaceae and before Euphorbiaceae.Ks analysis showed that two whole-genome duplication events occurred in passion fruit at 65 MYA and 12 MYA,which may have contributed to its large genome size.An integrated analysis of genomic,transcriptomic,and metabolomic data showed that‘alpha-linolenic acid metabolism’,‘metabolic pathways’,and‘secondary metabolic pathways’were the main pathways involved in the synthesis of important volatile organic compounds(VOCs)in passion fruit,and this analysis identified some candidate genes,including GDP-fucose Transporter 1-like,Tetratricopeptide repeat protein 33,protein NETWORKED 4B isoform X1,and Golgin Subfamily A member 6-like protein 22.In addition,we identified 13 important gene families in fatty acid pathways and eight important gene families in terpene pathways.Gene family analysis showed that the ACX,ADH,ALDH,and HPL gene families,especially ACX13/14/15/20,ADH13/26/33,ALDH1/4/21,and HPL4/6,were the key genes for ester synthesis,while the TPS gene family,especially PeTPS2/3/4/24,was the key gene family for terpene synthesis.This work provides insights into genome evolution and flavor trait biology and offers valuable resources for the improved cultivation of passion fruit.展开更多
Tropical fruits,such as bananas,passion fruit,mangoes,and lychees,are rich in vitamins,flavonoids and non-flavonoid phenols,and are the healthiest way to intake bioactive compounds in one's daily diet.Coupled with...Tropical fruits,such as bananas,passion fruit,mangoes,and lychees,are rich in vitamins,flavonoids and non-flavonoid phenols,and are the healthiest way to intake bioactive compounds in one's daily diet.Coupled with their unique taste,tropical fruits are becoming more increasingly popular.The production of bananas is second only after grapes,while other tropical fruit are limited by the planting environment,resulting in a relatively low planting area and yield.With the improvement in breeding technology and planting technology,the development of tropical fruit crops will have broad prospects.MYB plays a major regulatory role in several biological processes,including growth and development of plants,quality formation,and stress resistance.There is a comparatively junior level of research on tropical fruit crops compared to grain fruit and model plants.Despite the progress that has been made in the development of molecular biology methods that can transform the genetic makeup of tropical fruit crops,the functional understanding of the multiple MYB genes is still in its initial stages.This paper aims to review the current status of the research on the development of these genes and their prospects.It is expected to provide a reference for the study of MYB transcription factors in tropical fruit crops and to provide new ideas for the functional resolution of MYB transcription factors in different biological processes.展开更多
基金the Central Public-interest Scientific Institution Basal Research Fund for the Chinese Academy of Tropical Agricultural Sciences(No.1630092020003)Integrated Demonstration of Key Techniques for the Industrial Development of Featured Crops in Rocky Desertification Areas of Yunnan-Guangxi-Guizhou Provinces(SMH2019-2021)+1 种基金the Central Public-interest Scientific Institution Basal Research Fund for the Chinese Academy of Tropical Agricultural Sciences(No.1630052019022)the Foundation of the State Key Laboratory of Biobased Material and Green Papermaking(No.23190444).
文摘Passion fruit(Passiflora edulis Sims)is an economically valuable fruit that is cultivated in tropical and subtropical regions of the world.Here,we report an~1341.7Mb chromosome-scale genome assembly of passion fruit,with 98.91%(~1327.18Mb)of the assembly assigned to nine pseudochromosomes.The genome includes 23,171 protein-coding genes,and most of the assembled sequences are repetitive sequences,with long-terminal repeats(LTRs)being the most abundant.Phylogenetic analysis revealed that passion fruit diverged after Brassicaceae and before Euphorbiaceae.Ks analysis showed that two whole-genome duplication events occurred in passion fruit at 65 MYA and 12 MYA,which may have contributed to its large genome size.An integrated analysis of genomic,transcriptomic,and metabolomic data showed that‘alpha-linolenic acid metabolism’,‘metabolic pathways’,and‘secondary metabolic pathways’were the main pathways involved in the synthesis of important volatile organic compounds(VOCs)in passion fruit,and this analysis identified some candidate genes,including GDP-fucose Transporter 1-like,Tetratricopeptide repeat protein 33,protein NETWORKED 4B isoform X1,and Golgin Subfamily A member 6-like protein 22.In addition,we identified 13 important gene families in fatty acid pathways and eight important gene families in terpene pathways.Gene family analysis showed that the ACX,ADH,ALDH,and HPL gene families,especially ACX13/14/15/20,ADH13/26/33,ALDH1/4/21,and HPL4/6,were the key genes for ester synthesis,while the TPS gene family,especially PeTPS2/3/4/24,was the key gene family for terpene synthesis.This work provides insights into genome evolution and flavor trait biology and offers valuable resources for the improved cultivation of passion fruit.
基金supported by Hainan Provincial Natural Science Foundation of China(321RC1088,321MS091,320QN 305 and 321RC686)the project of Sanya Yazhou Bay Science and Technology City(SCKJ-JYRC-2022-84,SCKJ-JYRC-2022-93).
文摘Tropical fruits,such as bananas,passion fruit,mangoes,and lychees,are rich in vitamins,flavonoids and non-flavonoid phenols,and are the healthiest way to intake bioactive compounds in one's daily diet.Coupled with their unique taste,tropical fruits are becoming more increasingly popular.The production of bananas is second only after grapes,while other tropical fruit are limited by the planting environment,resulting in a relatively low planting area and yield.With the improvement in breeding technology and planting technology,the development of tropical fruit crops will have broad prospects.MYB plays a major regulatory role in several biological processes,including growth and development of plants,quality formation,and stress resistance.There is a comparatively junior level of research on tropical fruit crops compared to grain fruit and model plants.Despite the progress that has been made in the development of molecular biology methods that can transform the genetic makeup of tropical fruit crops,the functional understanding of the multiple MYB genes is still in its initial stages.This paper aims to review the current status of the research on the development of these genes and their prospects.It is expected to provide a reference for the study of MYB transcription factors in tropical fruit crops and to provide new ideas for the functional resolution of MYB transcription factors in different biological processes.
