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表达相关的转录因子相互作用模式 被引量:4
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作者 冯琳璎 张利绒 《内蒙古大学学报(自然科学版)》 CAS 北大核心 2018年第5期476-486,共11页
转录因子通过与基因上游特定序列结合,调控着靶基因在特定的时间和空间以一定的强度表达.不同的转录因子之间通过多种方式相互组合,为这一调控过程提供了更多的可能.为了研究与表达相关的转录因子的调控模式,以GM12878细胞系作为研究对... 转录因子通过与基因上游特定序列结合,调控着靶基因在特定的时间和空间以一定的强度表达.不同的转录因子之间通过多种方式相互组合,为这一调控过程提供了更多的可能.为了研究与表达相关的转录因子的调控模式,以GM12878细胞系作为研究对象,基于该细胞系的两种RNA-seq数据,得到了高、低表达基因集合,根据83种转录因子结合的ChIP-seq数据,在两个数据集中分别构建了与基因表达紧密相关的转录因子互作网络,并利用软件Cytoscape对网络进行可视化,从而直观地展现了高低表达基因中转录因子的相互作用模式.同时,利用WGCNA(Weighted Correlation Network Analysis)构建了转录因子的共调控网络,发现高表达基因集合的转录因子调控网络中的一些子网模式与WGCNA构建的共调控模块得到对照.最终在高表达基因转录因子相互作用网络中发现占据重要地位的转录因子BCL11A和特异的组合模式(NFYA-NFYB-SP1),另一种组合模式(BATF-IRF4)则同时存在于高低表达基因的网络中. 展开更多
关键词 转录因子 基因表达 调控模式
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IcarisideⅡ alleviates oxygen-glucose deprivation and reoxygenation-induced PC12 celloxidative injury by activating Nrf2 / SIRT3signaling pathway 被引量:17
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作者 feng lin-ying GAO Jian-mei +2 位作者 LIU Yuan-gui SHI Jing-shan GONG Qi-hai 《中国药理学与毒理学杂志》 CAS CSCD 北大核心 2018年第9期667-668,共2页
OBJECTIVE To investigate icariside(ICS)Ⅱ protects against PC12 cel damage induced by oxygen-glucose deprivation and reoxygenation and explore its mechanism.METHODS The oxidative stress injury model was induced by oxy... OBJECTIVE To investigate icariside(ICS)Ⅱ protects against PC12 cel damage induced by oxygen-glucose deprivation and reoxygenation and explore its mechanism.METHODS The oxidative stress injury model was induced by oxygen-glucose deprivation/reoxygenation(OGD/R) 2 h/24 h in PC12 cells.N-acetyl-lcysteine(NAC),a classical anti-oxidant,was used as positive control.Pharmacodynamic experimental study groups as follows:control,control+ICS Ⅱ50 μmol·L^(-1),OGD/R,OGD/R+ICSⅡ 12.5 μmol·L^(-1),OGD/R + ICS Ⅱ 25 μmol·L^(-1),OGD/R + ICS Ⅱ50 μmol·L^(-1),and OGD/R+NAC 100 μmol·L^(-1) groups.Cell viability and lactate dehydrogenase(LDH) leakage rate were measured by MTT assay and LDH ELISA kit,respectively.Moreover,reactive oxygen species(ROS) ELISA kit was used for detection of intracellular ROS generation,Mito-SOX fluorescence staining was used for detecting production of ROS in mitochondria and mitochondrial membrane potential(MMP)was detected by rhodamine 123 dye.In addition,PC12 cells apoptosis was detected by one-step TUNEL assay.Furthermore,the expressions of nuclear factor erythroid 2-related factors(Nrf2),Keap1,HO^(-1),NQO^(-1),silent information regulator 3(SIRT3),IDH2,Bax,Bcl-2 and caspase 3 were detected by Western blotting analysis.RESULTS The results of MTT and LDH assay showed that OGD/R reduced the cell viability and improved LDH release compared with the control or ICSⅡ 50 μmol·L^(-1) alone(P<0.01).Meanwhile,OGD/R not only increased intracellular and mitochondrial ROS generation,but also elevated the fluorescence intensity of TUNEL staining,at the same time,the MMP was declined when challenged by OGD/R.Furthermore,the Western blotting results showed that OGD/R induced the increase in the expression of cytoplasm-Nrf2,Keap1,Bax and cleaved-caspase 3 level,while the decrease in the expression of nucleus-Nrf2,HO^(-1),NQO^(-1),SIRT3,IDH2 and Bcl-2(P<0.05).However,ICS Ⅱ significantly increased the viability of PC12 cells and reduced LDH leakage(P<0.01).Notably,ICS Ⅱ also suppressed ROS generation both in the intracellular and mitochondria,as well as restored MMP.It was also worthy to note that ICS Ⅱ decreased the expressions of cytoplasmNrf2,Keap1,Bax and the level of cleaved-caspase3,whereas,it increased the expressions of nucleus-Nrf2,HO^(-1),NQO^(-1),SIRT3,IDH2 and Bcl-2(P<0.05).CONCLUSION ICSⅡ reduced OGD/Rinduced oxidative damage in PC12 cells under the laboratory conditions,and its underlying mechanism may be related to the regulation of Nrf2/SIRT3 signaling pathway. 展开更多
关键词 icariside oxygen-glucose DEPRIVATION REOXYGENATION oxidative injury apoptosis nuclear factor ERYTHROID 2-related factors SILENT information regulator 3
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Protective effect of icarisideⅡ on oxygen-glucose deprivation and reoxygenation-induced injury incerebral cortical neurons
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作者 CHEN Na-na XU Fan +2 位作者 feng lin-ying GAO Jian-mei GONG Qi-hai 《中国药理学与毒理学杂志》 CAS CSCD 北大核心 2018年第9期681-682,共2页
OBJECTIVE To explore the effect of icariside Ⅱ(ICS Ⅱ) on oxygen-glucose deprivation and reoxygenation(OGD/R)-induced injury in cerebral cortical neuronal cels.METHODS Primary cerebral cortical neuronal cells were de... OBJECTIVE To explore the effect of icariside Ⅱ(ICS Ⅱ) on oxygen-glucose deprivation and reoxygenation(OGD/R)-induced injury in cerebral cortical neuronal cels.METHODS Primary cerebral cortical neuronal cells were deprived of oxygen and glucose for 2 h to simulate ischemic stroke injury in vitro.The experiment was divided into 8 groups,which were control,control+ICSⅡ 25 μmol·L^(-1),OGD/R,OGD/R+ICSⅡ(6.25,12.5,25 μmol·L^(-1)),OGD/R+3-methyladenine(3-MA) and OGD/R+Rapamycin(Rap).The protective effect of ICS Ⅱ were detected by MTT assay and lactate dehydrogenase(LDH),respectively.Autophagic flux and autophagy related proteins expressions were detected by using adenovirus harboring tf-LC3 and Western blotting,respectively.RESULTS Compared with OGD/R group,the cell viability treated with ICSⅡwas elevated in a concentration-dependent manner,and the leakage rate of LDH was lowed.Moreover,ICSⅡ not only suppressed OGD/R-induced autophagic flux,but also inhibited the increase of LC3-Ⅱ/LC3-Ⅰ ratio and Beclin 1 after OGD/R insulted.CONCLUSION ICS Ⅱ exerts protective effects on OGD/R-induced cerebral cortical neuronal cells through inhibiting excessive autophagy. 展开更多
关键词 icariside oxygen-glucose DEPRIVATION REOXYGENATION NEURONS AUTOPHAGY
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