The increasing number of new fungal species described from all over the world along with the use of genetics to define taxa,has dramatically changed the classification system of early-diverging fungi over the past sev...The increasing number of new fungal species described from all over the world along with the use of genetics to define taxa,has dramatically changed the classification system of early-diverging fungi over the past several decades.The number of phyla established for non-Dikarya fungi has increased from 2 to 17.However,to date,both the classification and phylogeny of the basal fungi are still unresolved.In this article,we review the recent taxonomy of the basal fungi and re-evaluate the relationships among early-diverging lineages of fungal phyla.We also provide information on the ecology and distribu-tion in Mucoromycota and highlight the impact of chytrids on amphibian populations.Species concepts in Chytridiomycota,Aphelidiomycota,Rozellomycota,Neocallimastigomycota are discussed in this paper.To preserve the current application of the genus Nephridiophaga(Chytridiomycota:Nephridiophagales),a new type species,Nephridiophaga blattellae,is proposed.展开更多
Fungi are one of the most diverse groups of organisms with an estimated number of species in the range of 2-3 million.The higher-level ranking of fungi has been discussed in the framework of molecular phylogenetics si...Fungi are one of the most diverse groups of organisms with an estimated number of species in the range of 2-3 million.The higher-level ranking of fungi has been discussed in the framework of molecular phylogenetics since Hibbett et al.,and the definition and the higher ranks(e.g.,phyla)of the‘true fungi’have been revised in several subsequent publications.Rapid accumulation of novel genomic data and the advancements in phylogenetics now facilitate a robust and precise foundation for the higher-level classification within the kingdom.This study provides an updated classification of the kingdom Fungi,drawing upon a comprehensive phylogenomic analysis of Holomycota,with which we outline well-supported nodes of the fungal tree and explore more contentious groupings.We accept 19 phyla of Fungi,viz.Aphelidiomycota,Ascomycota,Basidiobolomycota,Basidiomycota,Blastocladiomycota,Calcarisporiellomycota,Chytridiomycota,Entomophthoromycota,Entorrhizomycota,Glomeromycota,Kickxellomycota,Monoblepharomycota,Mortierellomycota,Mucoromycota,Neocal-limastigomycota,Olpidiomycota,Rozellomycota,Sanchytriomycota,and Zoopagomycota.In the phylogenies,Caulochy-triomycota resides in Chytridiomycota;thus,the former is regarded as a synonym of the latter,while Caulochytriomycetes is viewed as a class in Chytridiomycota.We provide a description of each phylum followed by its classes.A new subphylum,Sanchytriomycotina Karpov is introduced as the only subphylum in Sanchytriomycota.The subclass Pneumocystomycetidae Kirk et al.in Pneumocystomycetes,Ascomycota is invalid and thus validated.Placements of fossil fungi in phyla and classes are also discussed,providing examples.展开更多
基金HBL was supported by the Graduate Program for the Undiscovered Taxa of Korea(NIBR202130202)by the Project on Survey and Discovery of Indigenous Fungal Species of Korea funded by NIBR+8 种基金by the Project on Discovery of Fungi from Freshwater and Collection of Fungarium funded by NNIBR of the Ministry of Environment(MOE)of the Republic of KoreaTYJ and DRS were supported by the US National Science Foundation Grants tDBI-1756202,DBI-1910720,and DEB-1929738GHJ thank FAPESP(2018/24915-1 and 2019/17237-0)KS was supported by a Grant-in-Aid for JSPS Overseas Research Fellowship from the Japan Society for the Promotion of ScienceBW was supported by grants from the National Research Foundation of Korea funded by the Ministry of Education(2015R1D1A01057282)the Ministry of Science,ICT,and Future Planning(2018R1A2B6006833)of the Republic of KoreaALS was supported by the Fundação de AmparoàCiência do Estado de Perbambuco and Coordenação de Aperfeiçoamento de Pessoal de Nível Superior(FACEPE/CNPq-APQ-0842-2.12/14.)We thank the National Council for Scientific and Technological Development(CNPq)for the research scholarship Granted to ALS.RR and JFHS were supported by Grants of the German Research Foundation(DFG,RA850/6-1 Project No.397619173 and STR1349/2-1 Project No.432453260,respectively)KV was supported by the German Research Foundation(DFG)through the Collaborative Research Center/Transregio FungiNet 124‘Pathogenic fungi and their human host:Networks of Interaction’,DFG Project Number 210879364,Project A6.
文摘The increasing number of new fungal species described from all over the world along with the use of genetics to define taxa,has dramatically changed the classification system of early-diverging fungi over the past several decades.The number of phyla established for non-Dikarya fungi has increased from 2 to 17.However,to date,both the classification and phylogeny of the basal fungi are still unresolved.In this article,we review the recent taxonomy of the basal fungi and re-evaluate the relationships among early-diverging lineages of fungal phyla.We also provide information on the ecology and distribu-tion in Mucoromycota and highlight the impact of chytrids on amphibian populations.Species concepts in Chytridiomycota,Aphelidiomycota,Rozellomycota,Neocallimastigomycota are discussed in this paper.To preserve the current application of the genus Nephridiophaga(Chytridiomycota:Nephridiophagales),a new type species,Nephridiophaga blattellae,is proposed.
基金provide by National Natural Science Foundation of China(Nos.32460002,31960005,32000009,32170019,NSFC 32260004)Russian Science Foundation(Nos.24-44-00099,23-74-00071,24-44-00099)+17 种基金National Research Council of Thailand(No.N42A650547)National Institute of Nursing Research(1P20GM152333-01)National Science Foundation(2029478)Japan Society for the Promotion of Science(JSPS,23K05900)National Science Foundation of China(32150410362)Croatian Science Foundation(HRZZ-IP-2022-10-5219)RSF(21-74-20089)ZIN RAS(122031100260-0)Science and Technology Human Resource Development Project(R3RJ2)Asian Development Bank,Conselho Naional de Desenvolvimento Científico e Tecnológico(306632/2022-5)zygosporic fungi in the Atlantic Forest of Pernambuco and Paraíba,Brazil(FACEPE-APQ-1346-2.12/22)Agriculture Sci-Tech Renovation(XJNKYWDZC-2022004)Research Foundation-Flanders(1206024N)FWF(P31038)Talent Recruitment Plan of Yunnan Province“High-End Foreign Experts”,National Centre for Research and Development,Poland(Tango-Ⅳ-C/0005/2019)CAS President’s International Fellowship Initiative(2021FYB0005)Smart Yunnan Project(E13K281261)High-Level Talent Recruitment Plan of Yunnan Provinces.
文摘Fungi are one of the most diverse groups of organisms with an estimated number of species in the range of 2-3 million.The higher-level ranking of fungi has been discussed in the framework of molecular phylogenetics since Hibbett et al.,and the definition and the higher ranks(e.g.,phyla)of the‘true fungi’have been revised in several subsequent publications.Rapid accumulation of novel genomic data and the advancements in phylogenetics now facilitate a robust and precise foundation for the higher-level classification within the kingdom.This study provides an updated classification of the kingdom Fungi,drawing upon a comprehensive phylogenomic analysis of Holomycota,with which we outline well-supported nodes of the fungal tree and explore more contentious groupings.We accept 19 phyla of Fungi,viz.Aphelidiomycota,Ascomycota,Basidiobolomycota,Basidiomycota,Blastocladiomycota,Calcarisporiellomycota,Chytridiomycota,Entomophthoromycota,Entorrhizomycota,Glomeromycota,Kickxellomycota,Monoblepharomycota,Mortierellomycota,Mucoromycota,Neocal-limastigomycota,Olpidiomycota,Rozellomycota,Sanchytriomycota,and Zoopagomycota.In the phylogenies,Caulochy-triomycota resides in Chytridiomycota;thus,the former is regarded as a synonym of the latter,while Caulochytriomycetes is viewed as a class in Chytridiomycota.We provide a description of each phylum followed by its classes.A new subphylum,Sanchytriomycotina Karpov is introduced as the only subphylum in Sanchytriomycota.The subclass Pneumocystomycetidae Kirk et al.in Pneumocystomycetes,Ascomycota is invalid and thus validated.Placements of fossil fungi in phyla and classes are also discussed,providing examples.
